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UnsatisfiedLinkError occurs in libjaybird22_x64.so undefined symbol: _ZTVN10__cxxabiv117__class_type_infoE [JDBC259] #306

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firebird-issue-importer opened this issue Jul 19, 2012 · 26 comments

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@firebird-issue-importer

Submitted by: Martin Mayerhofer (mmayerhofer)

Attachments:
libjaybird22_x64.so
libjaybird22.so

Votes: 1

libjaybird22_x64.so (ver. 2.2.0-release) / http://libfbembed.so (ver. 2.5.1) is present in the java.library.path and an exception gets thrown when trying to create a database connection to an embedded database

Exception:

Exception in thread "main" java.lang.UnsatisfiedLinkError: /home/rgba/IdeaProjects/TimeAttendant/libjaybird22_x64.so: /home/rgba/IdeaProjects/TimeAttendant/libjaybird22_x64.so: undefined symbol: _ZTVN10__cxxabiv117__class_type_infoE
at java.lang.ClassLoader$NativeLibrary.load(Native Method)
at java.lang.ClassLoader.loadLibrary0(ClassLoader.java:1807)
at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1732)
at java.lang.Runtime.loadLibrary0(Runtime.java:823)
at java.lang.System.loadLibrary(System.java:1028)
at org.firebirdsql.gds.impl.jni.JniGDSImpl.initJNIBridge(JniGDSImpl.java:63)
at org.firebirdsql.gds.impl.jni.JniGDSImpl.<clinit>(JniGDSImpl.java:24)
at org.firebirdsql.gds.impl.jni.EmbeddedGDSFactoryPlugin.getGDS(EmbeddedGDSFactoryPlugin.java:40)
at org.firebirdsql.gds.impl.GDSFactory.getGDSForType(GDSFactory.java:220)
at org.firebirdsql.jca.FBManagedConnectionFactory.getGDS(FBManagedConnectionFactory.java:114)
at org.firebirdsql.jdbc.AbstractDriver.connect(AbstractDriver.java:124)
at java.sql.DriverManager.getConnection(DriverManager.java:582)
at java.sql.DriverManager.getConnection(DriverManager.java:185)
at FBConnect.main(FBConnect.java:30)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at com.intellij.rt.execution.application.AppMain.main(AppMain.java:120)

Java Code:

import org.firebirdsql.jdbc.FBResultSet;

import java.sql.Connection;
import java.sql.DriverManager;
import java.sql.Statement;

public class FBConnect {

public static void main(String[] args) {

try \{
  Class\.forName\("org\.firebirdsql\.jdbc\.FBDriver"\)\.newInstance\(\);
\} catch \(ClassNotFoundException ex\) \{
  ex\.printStackTrace\(\);
\} catch \(IllegalAccessException ex\) \{
  ex\.printStackTrace\(\);
\} catch \(InstantiationException ex\) \{
  ex\.printStackTrace\(\);
\}

try \{
  Connection bd = DriverManager
          \.getConnection\(
                  "jdbc:firebirdsql:embedded:/home/rgba/IdeaProjects/TimeAttendant/TADATA\.FDB",
                  "sysdba", "masterkey"\);
  Statement st = bd\.createStatement\(\);
  FBResultSet rs = \(FBResultSet\)st\.executeQuery\("select \* from TABLE1"\);
  while \(rs\.next\(\)\) \{
    System\.out\.print\(rs\.getString\(1\)\);
  \}
\} catch \(Exception e\) \{
  e\.printStackTrace\(\);
\}

}
}

Java VM Version:

java version "1.6.0_30"
Java(TM) SE Runtime Environment (build 1.6.0_30-b12)
Java HotSpot(TM) 64-Bit Server VM (build 20.5-b03, mixed mode)

OS:

Ubuntu 12.04

Commits: c6e191d 39f5dc0

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@firebird-issue-importer firebird-issue-importer commented Jul 19, 2012

Commented by: @mrotteveel

The problem is most likely caused by a missing libstdc++.so.6 on your machine.
Check if you have libstdc++.so.6 on your machine using
find /usr/ -name libstdc++.so.6

If not, then you should be able to install it using:
apt-get install libstdc++6

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@firebird-issue-importer firebird-issue-importer commented Jul 19, 2012

Commented by: @mrotteveel

BTW: As far as I can tell Jaybird itself does not depend on libstdc++6 (according to the ldd output), so it might be a dependency of Java.

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@firebird-issue-importer firebird-issue-importer commented Jul 19, 2012

Modified by: @mrotteveel

assignee: Roman Rokytskyy [ rrokytskyy ] => Mark Rotteveel [ avalanche1979 ]

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@firebird-issue-importer firebird-issue-importer commented Jul 21, 2012

Commented by: @mrotteveel

After some further investigating, it seems that the problem is with libjaybird. ldd -r shows that this symbol (and some others) are undefined:

mark@ubuntu-x64:~/development/jaybird/client-java/native$ ldd -r libjaybird22_x64.so
linux-vdso.so.1 => (0x00007fffa9a00000)
libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007fb4f6548000)
libgcc_s.so.1 => /lib/x86_64-linux-gnu/libgcc_s.so.1 (0x00007fb4f6330000)
/lib64/ld-linux-x86-64.so.2 (0x00007fb4f6b20000)
undefined symbol: _ZTVN10__cxxabiv117__class_type_infoE (./libjaybird22_x64.so)
undefined symbol: __gxx_personality_v0 (./libjaybird22_x64.so)
undefined symbol: _ZTISt9bad_alloc (./libjaybird22_x64.so)
undefined symbol: dlopen (./libjaybird22_x64.so)
undefined symbol: _ZdlPv (./libjaybird22_x64.so)
undefined symbol: _Znam (./libjaybird22_x64.so)
undefined symbol: __cxa_end_catch (./libjaybird22_x64.so)
undefined symbol: __cxa_allocate_exception (./libjaybird22_x64.so)
undefined symbol: dlclose (./libjaybird22_x64.so)
undefined symbol: _ZdaPv (./libjaybird22_x64.so)
undefined symbol: __cxa_begin_catch (./libjaybird22_x64.so)
undefined symbol: __cxa_throw (./libjaybird22_x64.so)
undefined symbol: dlsym (./libjaybird22_x64.so)
undefined symbol: _Znwm (./libjaybird22_x64.so)
undefined symbol: __cxa_free_exception (./libjaybird22_x64.so)

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@firebird-issue-importer firebird-issue-importer commented Jul 21, 2012

Commented by: @mrotteveel

Could you check if the attached version of the library solves the problem for you?

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@firebird-issue-importer firebird-issue-importer commented Jul 21, 2012

Modified by: @mrotteveel

Attachment: libjaybird22_x64.so [ 12177 ]

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@firebird-issue-importer firebird-issue-importer commented Jul 21, 2012

Commented by: @mrotteveel

Attached libjaybird22_x64.so was compiled by including <syslibset libs="stdc++,dl"/> into the gcc linker definition in build_native.xml (apparently the already included <linkerarg value="-ldl"/> and <linkerarg value="-lstdc++"/> are ignored).

The ldd output is now good:
mark@ubuntu-x64:~/development/jaybird/client-java$ ldd -r ./output/native/libjaybird22_x64.so
linux-vdso.so.1 => (0x00007fff92b90000)
libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007fcba09e8000)
libstdc++.so.6 => /usr/lib/x86_64-linux-gnu/libstdc++.so.6 (0x00007fcba06e0000)
libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00007fcba04d8000)
libgcc_s.so.1 => /lib/x86_64-linux-gnu/libgcc_s.so.1 (0x00007fcba02c0000)
/lib64/ld-linux-x86-64.so.2 (0x00007fcba0fc0000)
libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007fcba0038000)

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@firebird-issue-importer firebird-issue-importer commented Jul 21, 2012

Commented by: Martin Mayerhofer (mmayerhofer)

I tried the attached library and the UnsatisfiedLinkError is gone, nevertheless there is another error popping up which also ends in the native library, I have both http://libfbembed.so + http://libfbclient.so (both ver. 2.5.1) in my library path.

Exception:

org.firebirdsql.gds.impl.jni.InternalError: FirebirdApiBinding::Initialize - Could not find or load the firebird client library.
at org.firebirdsql.gds.impl.jni.JniGDSImpl.nativeInitilize(Native Method)
at org.firebirdsql.gds.impl.jni.JniGDSImpl.attemptToLoadAClientLibraryFromList(JniGDSImpl.java:92)
at org.firebirdsql.gds.impl.jni.EmbeddedGDSImpl.<init>(EmbeddedGDSImpl.java:31)
at org.firebirdsql.gds.impl.jni.EmbeddedGDSImpl.<init>(EmbeddedGDSImpl.java:21)
at org.firebirdsql.gds.impl.jni.EmbeddedGDSFactoryPlugin.getGDS(EmbeddedGDSFactoryPlugin.java:40)
at org.firebirdsql.gds.impl.GDSFactory.getGDSForType(GDSFactory.java:220)
at org.firebirdsql.jca.FBManagedConnectionFactory.getGDS(FBManagedConnectionFactory.java:114)
at org.firebirdsql.jdbc.AbstractDriver.connect(AbstractDriver.java:124)
at java.sql.DriverManager.getConnection(DriverManager.java:582)
at java.sql.DriverManager.getConnection(DriverManager.java:185)
at FBConnect.main(FBConnect.java:23)
org.firebirdsql.gds.impl.jni.InternalError: FirebirdApiBinding::Initialize - Could not find or load the firebird client library.
at org.firebirdsql.gds.impl.jni.JniGDSImpl.nativeInitilize(Native Method)
at org.firebirdsql.gds.impl.jni.JniGDSImpl.attemptToLoadAClientLibraryFromList(JniGDSImpl.java:92)
at org.firebirdsql.gds.impl.jni.EmbeddedGDSImpl.<init>(EmbeddedGDSImpl.java:31)
at org.firebirdsql.gds.impl.jni.EmbeddedGDSImpl.<init>(EmbeddedGDSImpl.java:21)
at org.firebirdsql.gds.impl.jni.EmbeddedGDSFactoryPlugin.getGDS(EmbeddedGDSFactoryPlugin.java:40)
at org.firebirdsql.gds.impl.GDSFactory.getGDSForType(GDSFactory.java:220)
at org.firebirdsql.jca.FBManagedConnectionFactory.getGDS(FBManagedConnectionFactory.java:114)
at org.firebirdsql.jdbc.AbstractDriver.connect(AbstractDriver.java:124)
at java.sql.DriverManager.getConnection(DriverManager.java:582)
at java.sql.DriverManager.getConnection(DriverManager.java:185)
at FBConnect.main(FBConnect.java:23)
java.lang.RuntimeException: Failed to initialize Jaybird native library. This is most likely due to a failure to load the firebird client library.
at org.firebirdsql.gds.impl.jni.JniGDSImpl.attemptToLoadAClientLibraryFromList(JniGDSImpl.java:105)
at org.firebirdsql.gds.impl.jni.EmbeddedGDSImpl.<init>(EmbeddedGDSImpl.java:31)
at org.firebirdsql.gds.impl.jni.EmbeddedGDSImpl.<init>(EmbeddedGDSImpl.java:21)
at org.firebirdsql.gds.impl.jni.EmbeddedGDSFactoryPlugin.getGDS(EmbeddedGDSFactoryPlugin.java:40)
at org.firebirdsql.gds.impl.GDSFactory.getGDSForType(GDSFactory.java:220)
at org.firebirdsql.jca.FBManagedConnectionFactory.getGDS(FBManagedConnectionFactory.java:114)
at org.firebirdsql.jdbc.AbstractDriver.connect(AbstractDriver.java:124)
at java.sql.DriverManager.getConnection(DriverManager.java:582)
at java.sql.DriverManager.getConnection(DriverManager.java:185)
at FBConnect.main(FBConnect.java:23)

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@firebird-issue-importer firebird-issue-importer commented Jul 21, 2012

Commented by: @mrotteveel

Typical debugging problem :( Solve one problem and another pops up. I will investigate further.

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@firebird-issue-importer firebird-issue-importer commented Jul 21, 2012

Commented by: @mrotteveel

I tried this under Ubuntu 12.04 As far as I can see under Ubuntu 12.04, the libfbembed2.5 package does not create a /usr/lib/libfbembed.so or /usr/lib/x86_64-linux-gnu/libfbembed.so symlink to /usr/lib/x86_64-linux-gnu/libfbembed.so.2.5.1. After adding this symlink manually the library is found.

BTW: I didn't get the original undefined symbol error with the original libjaybird22_x64.so under Ubuntu 12.04. Which Java version do you have installed? I installed openjdk-6-jdk; maybe the errors depend on the exact java version.

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@firebird-issue-importer firebird-issue-importer commented Jul 21, 2012

Commented by: Martin Mayerhofer (mmayerhofer)

I have following java version installed:

Java VM Version:

java version "1.6.0_30"
Java(TM) SE Runtime Environment (build 1.6.0_30-b12)
Java HotSpot(TM) 64-Bit Server VM (build 20.5-b03, mixed mode)

Just to add some more information, I used following libraries:

http://sourceforge.net/projects/firebird/files/firebird-linux-amd64/2.5.1-Release/FirebirdCS-2.5.1.26351-0.amd64.tar.gz/download

edit: corrected libary link

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@firebird-issue-importer firebird-issue-importer commented Jul 21, 2012

Commented by: @mrotteveel

That download is for the Windows 64 Firebird Embedded, which is not going to work under Ubuntu ;)

Could you please check which http://libfbembed.so files are available on your computer. Most likely you are missing the http://libfbembed.so symlink itself (that was the problem on my ubuntu 12.04 VM).

I would also like to know which Ubuntu package you installed for Java, as your version info differs from the openjdk-6-jdk I installed using apt-get and that package reports:
java version "1.6.0_24"
OpenJDK Runtime Environment (IcedTea6 1.11.3) (6b24-1.11.3-1ubuntu0.12.04.1)
OpenJDK 64-Bit Server VM (build 20.0-b12, mixed mode)

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@firebird-issue-importer firebird-issue-importer commented Jul 21, 2012

Commented by: Martin Mayerhofer (mmayerhofer)

sorry pasted the wrong link, of course the windows version will not work under ubuntu ;)

here is the correct link: http://sourceforge.net/projects/firebird/files/firebird-linux-amd64/2.5.1-Release/FirebirdCS-2.5.1.26351-0.amd64.tar.gz/download

as for the java installation, I downloaded it from oracle: http://www.oracle.com/technetwork/java/javasebusiness/downloads/java-archive-downloads-javase6-419409.html#jdk-6u30-oth-JPR

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@firebird-issue-importer firebird-issue-importer commented Jul 22, 2012

Commented by: @mrotteveel

I expected that you would have used the packages from the Ubuntu 12.04 repository itself. I am not sure if I have time to dive deeper into it this week, and I am on holiday from next Saturday. For the embedded library loading be sure to check that the library (or its symlink) is called http://libfbembed.so, and that it is in the actual library path (either specified in java.library.path, or ld.so.conf or in LD_LIBRARY_PATH).

With the Firebird embedded library from the Ubuntu repository I had the same(?) problem as it did not have a http://libfbembed.so library (just a so.2.5 and so.2.5.1).

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@firebird-issue-importer firebird-issue-importer commented Jul 26, 2012

Commented by: Paolo (pcucchi)

I've the same problem in 32 bit system: http://libjaybird22.so: undefined symbol: _ZTVN10__cxxabiv117__class_type_infoE
ldd -r shows that this symbol (and some others) are undefined.

Is there a build that fixes this problem also for 32 bit system?

uts@uts-desktop:/usr/lib/i686$ ldd -r /home/uts/NetBeansProjects/ladon/lib/win/32/libjaybird22.so
undefined symbol: _ZTVN10__cxxabiv117__class_type_infoE (/home/uts/NetBeansProjects/ladon/lib/win/32/libjaybird22.so)
undefined symbol: __gxx_personality_v0 (/home/uts/NetBeansProjects/ladon/lib/win/32/libjaybird22.so)
undefined symbol: _ZTISt9bad_alloc (/home/uts/NetBeansProjects/ladon/lib/win/32/libjaybird22.so)
undefined symbol: dlopen (/home/uts/NetBeansProjects/ladon/lib/win/32/libjaybird22.so)
undefined symbol: _ZdlPv (/home/uts/NetBeansProjects/ladon/lib/win/32/libjaybird22.so)
undefined symbol: __cxa_end_catch (/home/uts/NetBeansProjects/ladon/lib/win/32/libjaybird22.so)
undefined symbol: __cxa_allocate_exception (/home/uts/NetBeansProjects/ladon/lib/win/32/libjaybird22.so)
undefined symbol: dlclose (/home/uts/NetBeansProjects/ladon/lib/win/32/libjaybird22.so)
undefined symbol: _Znwj (/home/uts/NetBeansProjects/ladon/lib/win/32/libjaybird22.so)
undefined symbol: _ZdaPv (/home/uts/NetBeansProjects/ladon/lib/win/32/libjaybird22.so)
undefined symbol: _Znaj (/home/uts/NetBeansProjects/ladon/lib/win/32/libjaybird22.so)
undefined symbol: __cxa_begin_catch (/home/uts/NetBeansProjects/ladon/lib/win/32/libjaybird22.so)
undefined symbol: __cxa_throw (/home/uts/NetBeansProjects/ladon/lib/win/32/libjaybird22.so)
undefined symbol: dlsym (/home/uts/NetBeansProjects/ladon/lib/win/32/libjaybird22.so)
undefined symbol: __cxa_free_exception (/home/uts/NetBeansProjects/ladon/lib/win/32/libjaybird22.so)
linux-gate.so.1 => (0xb8047000)
libc.so.6 => /lib/tls/i686/cmov/libc.so.6 (0xb7ebb000)
libgcc_s.so.1 => /lib/libgcc_s.so.1 (0xb7eac000)
/lib/ld-linux.so.2 (0xb8048000)

My system is:
Ubuntu 8.10 kernel 2.6.27-11-generic
java version "1.6.0_24"
Java(TM) SE Runtime Environment (build 1.6.0_24-b07)
Java HotSpot(TM) Client VM (build 19.1-b02, mixed mode, sharing)

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@firebird-issue-importer firebird-issue-importer commented Jul 26, 2012

Commented by: Martin Mayerhofer (mmayerhofer)

Currently the only solution would be that you compile the natives on your own, including the fix to the build_native.xml which Mark mentioned earlier ...

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@firebird-issue-importer firebird-issue-importer commented Jul 26, 2012

Commented by: @mrotteveel

I will upload a new version of the 32 bit library later today.

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@firebird-issue-importer firebird-issue-importer commented Jul 26, 2012

Modified by: @mrotteveel

Attachment: http://libjaybird22.so [ 12180 ]

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@firebird-issue-importer firebird-issue-importer commented Jul 26, 2012

Commented by: @mrotteveel

Attached correctly linked 32 bit http://libjaybird22.so

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@firebird-issue-importer firebird-issue-importer commented Aug 11, 2012

Commented by: @mrotteveel

This issue needs to be linked to Version Jaybird 2.2.1 when it is created

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@firebird-issue-importer firebird-issue-importer commented Aug 11, 2012

Modified by: @mrotteveel

Fix Version: Jaybird 2.3 [ 10440 ]

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@firebird-issue-importer firebird-issue-importer commented Aug 11, 2012

Commented by: @mrotteveel

Committed fixed build file to trunk and Branch_2_2

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@firebird-issue-importer firebird-issue-importer commented Aug 12, 2012

Modified by: @mrotteveel

Fix Version: Jaybird 2.2.1 [ 10474 ]

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@firebird-issue-importer firebird-issue-importer commented Aug 12, 2012

Modified by: @mrotteveel

status: Open [ 1 ] => Resolved [ 5 ]

resolution: Fixed [ 1 ]

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@firebird-issue-importer firebird-issue-importer commented Sep 3, 2012

Commented by: Paolo (pcucchi)

I've set library path to FirebirdCS-2.5.1.26351-0.amd64/buildroot/opt/firebird/lib/libfbclient.so or /opt/firebird/lib (after installing it) or /usr/lib64 but I always have "Could not find or load the firebird client library"

If I statically load library through System.loadlibrary() I've no error.
System.loadLibrary("icudata");
System.loadLibrary("icuuc");
System.loadLibrary("icui18n");
System.loadLibrary("ib_util");
System.loadLibrary("fbembed");
System.loadLibrary("fbclient");

What could be wrong?

My system properties:
Jaybird 2.2
Java 1.7.0_06 64 bit
OS: Ubuntu 12.04 64 bit

Runtime error:

org.firebirdsql.gds.impl.jni.InternalError: FirebirdApiBinding::Initialize - Could not find or load the firebird client library.
at org.firebirdsql.gds.impl.jni.JniGDSImpl.nativeInitilize(Native Method)
at org.firebirdsql.gds.impl.jni.JniGDSImpl.attemptToLoadAClientLibraryFromList(JniGDSImpl.java:92)
at org.firebirdsql.gds.impl.jni.EmbeddedGDSImpl.<init>(EmbeddedGDSImpl.java:31)
at org.firebirdsql.gds.impl.jni.EmbeddedGDSImpl.<init>(EmbeddedGDSImpl.java:21)
at org.firebirdsql.gds.impl.jni.EmbeddedGDSFactoryPlugin.getGDS(EmbeddedGDSFactoryPlugin.java:40)
at org.firebirdsql.gds.impl.GDSFactory.getGDSForType(GDSFactory.java:220)
at org.firebirdsql.jdbc.FBConnectionProperties.getGds(FBConnectionProperties.java:502)
at org.firebirdsql.jdbc.FBConnectionProperties.getDatabaseParameterBuffer(FBConnectionProperties.java:393)
at org.firebirdsql.jca.FBManagedConnectionFactory.getDatabaseParameterBuffer(FBManagedConnectionFactory.java:205)
at org.firebirdsql.jca.FBManagedConnectionFactory.getDefaultConnectionRequestInfo(FBManagedConnectionFactory.java:407)
at org.firebirdsql.pool.AbstractFBConnectionPoolDataSource.allocateConnection(AbstractFBConnectionPoolDataSource.java:265)
at org.firebirdsql.pool.PooledConnectionQueue.addConnection(PooledConnectionQueue.java:491)
at org.firebirdsql.pool.PooledConnectionQueue.start(PooledConnectionQueue.java:155)
at org.firebirdsql.pool.AbstractConnectionPool.getQueue(AbstractConnectionPool.java:205)
at org.firebirdsql.pool.AbstractFBConnectionPoolDataSource.getPooledConnection(AbstractFBConnectionPoolDataSource.java:372)
at org.firebirdsql.pool.FBWrappingDataSource.getConnection(FBWrappingDataSource.java:219)
at com.tecnosens.ladon.dbInterface.DbConnection.connectEmbeddedDS(DbConnection.java:213)

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@firebird-issue-importer firebird-issue-importer commented Feb 21, 2013

Modified by: @mrotteveel

status: Resolved [ 5 ] => Closed [ 6 ]

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