Clustering plugin for FlowJo built around the OPTICS algorithm
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src/opticsplugin
License.md
OPTICS.jar
README.md

README.md

OPTICS-Plugin

The OPTICS plugin is a population plugin for FlowJo. It performs density-based reordering and cluster detection to extract the clusters present in a population node. The user may select what parameters they wish to cluster the data on.

The user may specify the minimum points the algorithm requires to define a cluster, and the percent drop (ξ) that will signify the start of a new cluster. The clusters found will appear as sub-populations under the population on which the plugin was run.

System Requirements

  • Java 1.6+
  • FlowJo v10.1r7

The OPTICS Plugin was developed for FlowJo v10.1r7, and will not work on earlier versions.

Read full Gitbook: https://flowjollc.gitbooks.io/optics-plugin-developer-documentation/content/


##Disclaimer

Software distributed under the APACHE 2.0 License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.

THE SOFTWARE PROVIDED ON THE FLOWJO EXCHANGE SITE IS PROVIDED "AS IS" AND ANY EXPRESSED OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL FLOWJO, LLC OR ANY OF THEIR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Without limiting the foregoing, FlowJo, LLC makes no warranty that: 1. the software will meet your requirements. 2. the software will be uninterrupted, timely, secure or error-free. 3. the results that may be obtained from the use of the software will be effective, accurate or reliable. 4. the quality of the software will meet your expectations. 5. any errors in the software obtained from the FlowJo Exchange web site will be corrected.

The use of the software downloaded through the FlowJo Exchange site is done at your own discretion and risk and with agreement that you will be solely responsible for any damage to your computer system or loss of data that results from such activities. No advice or information, whether oral or written, obtained by you from FlowJo, LLC, its its website, its contributors, employees, or contractors shall create any warranty for the software.

Apache License 2.0