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FlyBrainLab Resources
| Wikis | Repositories | Docs & Tutorials | Manuscripts & Talks | Datasets | Troubleshooting | Links |
Refer to the Installation section in this repository.
| Repository | Utility | Link |
|---|---|---|
| FlyBrainLab Entry Point | Docs & Wikis | GitHub |
| FlyBrainLab Docker Image | Docker Image for FlyBrainLab | DockerHub |
| NeuroMynerva | User Frontend | GitHub |
| FBLClient | User Backend | GitHub |
| Neurokernel | Computing Engine | GitHub |
| NeuroArch | Graph Database | GitHub |
| FFBO Processor | Server Backend Component | GitHub |
| NeuroArch Server | Server Backend Component | GitHub |
| NLP Server | Server Backend Component | GitHub |
| Neurokernel Server | Server Backend Component | GitHub |
Latest tutorials can be found in the FlyBrainLab/Tutorials repository.
- Usage
- Data Loading
- in vivo Antenna Recording (electrophysiology): Notebook
- Aurel A. Lazar et al., Accelerating with FlyBrainLab the Discovery of the Functional Logic of the Drosophila Brain in the Connectomic and Synaptomic Era, eLife 2021;10:e62362 doi: 10.7554/eLife.62362
- Nikul H. Ukani et al., The Fruit Fly Brain Observatory: From Structure to Function, bioRxiv 2019; 580290; doi: 10.1101/580290
- [July 22nd, 2020] FlyBrainLab: Accelerating the Discovery of the Functional Logic of the Fruit Fly Brain in the Connectomic/Synaptomic Era. Presented at CNS*2020 Workshop: Tools and resources for developing and sharing models in computational neuroscience.
- [October 12th, 2020] FlyBrainLab: Interactive Computing in the Connectomic/Synaptomic Era. Presented at JupyterCon 2020.
- [October 26th, 2020] Comparative Study of Fruit Fly Brain Circuit Models with FlyBrainLab. Presented at neuromatch 3.0.
- [November 11th, 2020] FlyBrainLab: An Interactive Computing Platform for Exploring the Drosophila Brain. Presented at PyData Global 2020.
- [April 2nd, 2021] FlyBrainLab: a Complete Programming Environment for Discovering the Functional Logic of the Fruit Fly Brain. Presented at Columbia University Data Science Institute Virtual Poster Sessions: Health Analytics Center.
We’ve included a few publicly available datasets in the NeuroArch database for easy accessibility. Users can also load and use custom datasets with their local FlyBrainLab installations. Default datasets in the FlyBrainLab platform are:
- FlyCircuit Adult Data (
v1.2): Reference - Larva L1EM Data: Reference
- Hemibrain Adult Data (
v1.0.1,v1.1,v1.2): Reference - Medulla 7 Column Data: Reference
Additionally, we provide a Datasets Version Tracker which includes information about and download links for NeuroArch database.
We encourage users to submit issues to our main issue tracker or use our gitter. For issues or questions specific to a particular component, users can also utilize the issue trackers associated with every repository listed in Repositories.