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These packages include:\r\n\r\n- opencv-python: OpenCV library for image processing.\r\n- matplotlib: Library for creating visualizations.\r\n- numpy: Numerical computing library for handling arrays and matrices.\r\n- scipy: Scientific computing library for mathematical functions and algorithms.\r\n- pandas: Data manipulation and analysis library.\r\n- seaborn: Statistical data visualization library based on matplotlib.\r\n- statsmodels: Library for statistical models and tests.\r\n\r\nTo install these dependencies, run the following command: \r\n\r\npip install -r requirements.txt\r\n\r\n\r\nMake sure to use a compatible version of Python with these dependencies.","shortMessageHtmlLink":"Add files via upload"}},{"before":null,"after":"40ecaab818e691b1755fcdfd465261ce14c51ed3","ref":"refs/heads/main","pushedAt":"2024-06-12T11:34:46.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"Foysalgebt12","name":"Foysal Ahammad","path":"/Foysalgebt12","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/65643273?s=80&v=4"},"commit":{"message":"Add files via upload\n\nNuclear Distance Analysis\r\n\r\nOverview:\r\nThis Python script performs analysis on the distances between nucleus positions in microscopy images for control and experimental groups. It calculates pairwise distances, visualizes the data with histograms, scatter plots, and KDE plots, and conducts statistical tests to compare the groups.\r\n\r\nFeatures:\r\nAnnotation of nucleus positions on microscopy images.\r\nCalculation of pairwise distances between nucleus positions.\r\nVisualization of nucleus positions and distances.\r\nStatistical analysis including ANOVA, Tukey HSD test, effect size calculation, Mann-Whitney U test, and Kruskal-Wallis test.\r\nDependencies:\r\nPython 3.x\r\nOpenCV\r\nMatplotlib\r\nNumPy\r\nScipy\r\nPandas\r\nSeaborn\r\n\r\nUsage:\r\n\r\nClone the repository.\r\nInstall Python and required dependencies.\r\nRun the script nuclear_distance_analysis.py.\r\nFollow the instructions to annotate nucleus positions on control and experimental images.\r\nView the generated plots and statistical analysis results.\r\n\r\nContributors:\r\nFoysal Ahammad\r\n\r\nLicense:\r\nThis project is licensed under the [license name], see the LICENSE file for details.","shortMessageHtmlLink":"Add files via upload"}}],"hasNextPage":false,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEY0jxwAA","startCursor":null,"endCursor":null}},"title":"Activity · Foysalgebt12/Nucleia-Distance"}