Docker image for eggNOG mapper
This is a very thin wrapper around the eggNOG mapper tool. See https://github.com/jhcepas/eggnog-mapper for more details on that tool.
The main addition is the inclusion of a
run_eggnog_mapper.py script, which handles:
- Downloading the reference database from an S3 bucket
- Writing the results to a local path or S3 bucket
There is also a script that will parse the eggNOG output and generate a SQLite database with all of the reaction metadata for the detected set of KEGG orthologs fetched from the KEGG API. The tables and columns are:
reaction table maps to all of the other tables, which in the case of the
compound table is via the
equation column, which contains
compound entry names.