math/octave: Update 3.1.2 -> 5.7.0

math/deal.ii/Makefile

@@ -1,7 +1,7 @@
 PORTNAME=	deal.II
 DISTVERSIONPREFIX=	v
 DISTVERSION=	9.3.1
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	math
 
 MAINTAINER=	yuri@FreeBSD.org

math/mcsim/Makefile

@@ -2,6 +2,7 @@
 
 PORTNAME=	mcsim
 PORTVERSION=	6.2.0
+PORTREVISION=	1
 CATEGORIES=	math
 MASTER_SITES=	GNU
 

math/octave/Makefile

@@ -2,7 +2,7 @@
 
 PORTNAME=	octave
 PORTVERSION=	${OCTAVE_VERSION}
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	math
 MASTER_SITES=	GNU
 

math/sundials/Makefile

@@ -1,68 +1,69 @@
 PORTNAME=	sundials
-DISTVERSION=	3.1.2
-PORTREVISION=	11
+DISTVERSION=	5.7.0
 CATEGORIES=	math
-MASTER_SITES=	https://computation.llnl.gov/projects/sundials/download/
+MASTER_SITES=	https://github.com/LLNL/sundials/releases/download/v${DISTVERSION}/
 
 MAINTAINER=	yuri@FreeBSD.org
 COMMENT=	SUite of Nonlinear and DIfferential/ALgebraic Equation Solvers
 
 LICENSE=	BSD3CLAUSE
 LICENSE_FILE=	${WRKSRC}/LICENSE
 
-USES=		cmake:noninja python:build # ninja doesn't support fortran
+USES=		cmake:noninja fortran localbase:ldflags python:build # ninja doesn't support fortran
 USE_LDCONFIG=	yes
 
-CMAKE_ARGS=	-DPTHREAD_ENABLE:BOOL=ON \
+CMAKE_ARGS=	-DENABLE_PTHREAD:BOOL=ON \
 		-DBUILD_STATIC_LIBS:BOOL=OFF
 
-PLIST_SUB=	SHL3=${DISTVERSION} SHL1=${DISTVERSION:R:R} SHLX3=1.1.2 SHLX1=1
+FCFLAGS:=	${FFLAGS} # project checks that these flags are equal
+
+TEST_TARGET=	test
 
 OPTIONS_DEFINE=		BLAS EXAMPLES LAPACK MPI # OPENMP detection is broken in cmake: https://gitlab.kitware.com/cmake/cmake/issues/17474
-OPTIONS_DEFAULT=	LAPACK
+#OPTIONS_DEFAULT=	LAPACK # LAPACK is broken
 OPTIONS_GROUP=		VECTORS
 OPTIONS_GROUP_VECTORS=	HYPRE PETSC
 VECTORS_DESC=		Alternative vector libraries
-BLAS_DESC=		Enable BLAS support
-HYPRE_DESC=		HYPRE vectors support (also enables MPI)
-LAPACK_DESC=		Use Lapack linear algebra (sets SUNDIALS_INDEX_TYPE=int32)
-PETSC_DESC=		PETSc vectors support (also enables MPI)
 OPTIONS_SUB=		yes
 
+BLAS_DESC=		Enable BLAS support
 BLAS_CMAKE_BOOL=	BLAS_ENABLE
-BLAS_USES=		blaslapack:openblas fortran
+BLAS_USES=		blaslapack:openblas
 BLAS_CMAKE_ON=		-DFREEBSD_GCC_DIR:STRING=${LOCALBASE}/lib/gcc${GCC_DEFAULT:S/.//} # assumes that fortran:gcc is used
 
 EXAMPLES_CMAKE_BOOL=	EXAMPLES_ENABLE_C EXAMPLES_ENABLE_CXX EXAMPLES_ENABLE_F77 EXAMPLES_ENABLE_F90
 EXAMPLES_CMAKE_ON=	-DEXAMPLES_INSTALL_PATH=${EXAMPLESDIR}
 
-HYPRE_CMAKE_BOOL=	HYPRE_ENABLE
+HYPRE_DESC=		HYPRE vectors support (also enables MPI)
+HYPRE_CMAKE_BOOL=	ENABLE_HYPRE
 HYPRE_CMAKE_ON=		-DHYPRE_INCLUDE_DIR=${LOCALBASE}/include \
 			-DHYPRE_LIBRARY_DIR=${LOCALBASE}/lib
-HYPRE_LIB_DEPENDS=	libHYPRE.so:science/hypre
+HYPRE_LIB_DEPENDS=	libHYPRE.so:science/hypre # maybe is broken due to https://github.com/hypre-space/hypre/issues/464
 HYPRE_IMPLIES=		MPI
 HYPRE_PREVENTS=		LAPACK  # error: Incompatible sunindextype for LAPACK; disable LAPACK and rebuild
 
-LAPACK_USES=		blaslapack:openblas fortran
-LAPACK_CMAKE_BOOL=	LAPACK_ENABLE
-LAPACK_CMAKE_ON=	-DSUNDIALS_INDEX_TYPE:STRING=int32_t \
+LAPACK_DESC=		Use Lapack linear algebra (sets SUNDIALS_INDEX_TYPE=int32)
+LAPACK_USES=		blaslapack:openblas
+LAPACK_CMAKE_BOOL=	ENABLE_LAPACK
+LAPACK_CMAKE_ON=	-DSUNDIALS_INDEX_TYPE:STRING=int64_t \
 			-DFREEBSD_GCC_DIR:STRING=${LOCALBASE}/lib/gcc${GCC_DEFAULT:S/.//} # assumes that fortran:gcc is used
+LAPACK_BROKEN=		Ignores LDFLAGS and fails to find lapack: https://github.com/LLNL/sundials/issues/74
 
 MPI_CMAKE_ON=		-DMPI_ENABLE:BOOL=ON
 MPI_LIB_DEPENDS=	libmpich.so:net/mpich
 
-PETSC_CMAKE_BOOL=	PETSC_ENABLE
-PETSC_CMAKE_ON=		-DPETSC_INCLUDE_DIR=${LOCALBASE}/include \
+PETSC_DESC=		PETSc vectors support (also enables MPI)
+PETSC_CMAKE_BOOL=	ENABLE_PETSC
+PETSC_CMAKE_ON=		-DPETSC_DIR=${LOCALBASE} \
+			-DPETSC_INCLUDE_DIR=${LOCALBASE}/include \
 			-DPETSC_LIBRARY_DIR=${LOCALBASE}/lib
 PETSC_LIB_DEPENDS=	libpetsc.so:science/PETSc
 PETSC_IMPLIES=		MPI
 PETSC_PREVENTS=		LAPACK  # error: Incompatible sunindextype for LAPACK; disable LAPACK and rebuild
+PERSC_BROKEN=		ERROR: PETSc not functional due to index size mismatch: SUNDIALS_INDEX_SIZE=64, but PETSc was built with 32-bit indices
 
 PORTEXAMPLES=	*
 
-post-patch:
-	@${FIND} ${WRKSRC}/examples -name "*.c" -o -name "*.cpp" | ${XARGS} ${REINPLACE_CMD} -E 's/"(ESYM|FSYM)"/" \1 "/g'
-
 post-install:
 	@${RM} ${STAGEDIR}${PREFIX}/include/sundials/LICENSE
 

math/sundials/distinfo

@@ -1,3 +1,3 @@
-TIMESTAMP = 1533629106
-SHA256 (sundials-3.1.2.tar.gz) = a8985bb1e851d90e24260450667b134bc13d71f5c6effc9e1d7183bd874fe116
-SIZE (sundials-3.1.2.tar.gz) = 18212893
+TIMESTAMP = 1630044758
+SHA256 (sundials-5.7.0.tar.gz) = 48da7baa8152ddb22aed1b02d82d1dbb4fbfea22acf67634011aa0303a100a43
+SIZE (sundials-5.7.0.tar.gz) = 22612286