Processing c:\users\andrew freiburger\documents\argonne\modelseed\cobrakbase
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'done'
Collecting modelseedpy>=0.3.0
  Using cached ModelSEEDpy-0.3.0-py3-none-any.whl (141 kB)
Requirement already satisfied: networkx>=2.4 in c:\users\andrew freiburger\appdata\local\programs\python\python39\lib\site-packages (from cobrakbase==0.3.1) (2.8.8)
Requirement already satisfied: pandas>=1.0.0 in c:\users\andrew freiburger\appdata\local\programs\python\python39\lib\site-packages (from cobrakbase==0.3.1) (1.5.2)
Requirement already satisfied: chemicals>=1.0.13 in c:\users\andrew freiburger\appdata\local\programs\python\python39\lib\site-packages (from modelseedpy>=0.3.0->cobrakbase==0.3.1) (1.1.2)
Requirement already satisfied: matplotlib>=3.0.0 in c:\users\andrew freiburger\appdata\local\programs\python\python39\lib\site-packages (from modelseedpy>=0.3.0->cobrakbase==0.3.1) (3.6.2)
Requirement already satisfied: pyeda in c:\users\andrew freiburger\appdata\local\programs\python\python39\lib\site-packages (from modelseedpy>=0.3.0->cobrakbase==0.3.1) (0.28.0)
Requirement already satisfied: scipy>=1.5.4 in c:\users\andrew freiburger\appdata\local\programs\python\python39\lib\site-packages (from modelseedpy>=0.3.0->cobrakbase==0.3.1) (1.9.3)
Requirement already satisfied: cobra>=0.17.1 in c:\users\andrew freiburger\appdata\local\programs\python\python39\lib\site-packages (from modelseedpy>=0.3.0->cobrakbase==0.3.1) (0.26.0)
Collecting scikit-learn==0.23.2
  Using cached scikit-learn-0.23.2.tar.gz (7.2 MB)
  Installing build dependencies: started
  Installing build dependencies: finished with status 'error'

  error: subprocess-exited-with-error

  × pip subprocess to install build dependencies did not run successfully.
  │ exit code: 1
  ╰─> [320 lines of output]
      Ignoring numpy: markers 'python_version == "3.6" and platform_system != "AIX" and platform_python_implementation == "CPython"' don't match your environment
      Ignoring numpy: markers 'python_version == "3.6" and platform_system != "AIX" and platform_python_implementation != "CPython"' don't match your environment
      Ignoring numpy: markers 'python_version == "3.7" and platform_system != "AIX"' don't match your environment
      Ignoring numpy: markers 'python_version == "3.6" and platform_system == "AIX"' don't match your environment
      Ignoring numpy: markers 'python_version == "3.7" and platform_system == "AIX"' don't match your environment
      Ignoring numpy: markers 'python_version >= "3.8" and platform_system == "AIX"' don't match your environment
      Collecting setuptools
        Using cached setuptools-65.6.3-py3-none-any.whl (1.2 MB)
      Collecting wheel
        Using cached wheel-0.38.4-py3-none-any.whl (36 kB)
      Collecting Cython>=0.28.5
        Using cached Cython-0.29.32-py2.py3-none-any.whl (986 kB)
      Collecting numpy==1.17.3
        Using cached numpy-1.17.3.zip (6.4 MB)
        Preparing metadata (setup.py): started
        Preparing metadata (setup.py): finished with status 'done'
      Collecting scipy>=0.19.1
        Using cached scipy-1.9.3-cp39-cp39-win_amd64.whl (40.2 MB)
        Using cached scipy-1.9.2-cp39-cp39-win_amd64.whl (40.1 MB)
        Using cached scipy-1.9.1-cp39-cp39-win_amd64.whl (38.6 MB)
        Using cached scipy-1.9.0-cp39-cp39-win_amd64.whl (38.6 MB)
        Using cached scipy-1.8.1-cp39-cp39-win_amd64.whl (36.9 MB)
      Installing collected packages: wheel, setuptools, numpy, Cython, scipy
        DEPRECATION: numpy is being installed using the legacy 'setup.py install' method, because it does not have a 'pyproject.toml' and the 'wheel' package is not installed. pip 23.1 will enforce this behaviour change. A possible replacement is to enable the '--use-pep517' option. Discussion can be found at https://github.com/pypa/pip/issues/8559
        Running setup.py install for numpy: started
        Running setup.py install for numpy: finished with status 'error'
        error: subprocess-exited-with-error

        Running setup.py install for numpy did not run successfully.
        exit code: 1

        [277 lines of output]
        Running from numpy source directory.

        Note: if you need reliable uninstall behavior, then install
        with pip instead of using `setup.py install`:

          - `pip install .`       (from a git repo or downloaded source
                                   release)
          - `pip install numpy`   (last NumPy release on PyPi)


        blas_opt_info:
        blas_mkl_info:
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries mkl_rt not found in ['C:\\Users\\Andrew Freiburger\\AppData\\Local\\Programs\\Python\\Python39\\lib', 'C:\\', 'C:\\Users\\Andrew Freiburger\\AppData\\Local\\Programs\\Python\\Python39\\libs']
          NOT AVAILABLE

        blis_info:
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries blis not found in ['C:\\Users\\Andrew Freiburger\\AppData\\Local\\Programs\\Python\\Python39\\lib', 'C:\\', 'C:\\Users\\Andrew Freiburger\\AppData\\Local\\Programs\\Python\\Python39\\libs']
          NOT AVAILABLE

        openblas_info:
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries openblas not found in ['C:\\Users\\Andrew Freiburger\\AppData\\Local\\Programs\\Python\\Python39\\lib', 'C:\\', 'C:\\Users\\Andrew Freiburger\\AppData\\Local\\Programs\\Python\\Python39\\libs']
        get_default_fcompiler: matching types: '['gnu', 'intelv', 'absoft', 'compaqv', 'intelev', 'gnu95', 'g95', 'intelvem', 'intelem', 'flang']'
        customize GnuFCompiler
        Could not locate executable g77
        Could not locate executable f77
        customize IntelVisualFCompiler
        Could not locate executable ifort
        Could not locate executable ifl
        customize AbsoftFCompiler
        Could not locate executable f90
        customize CompaqVisualFCompiler
        Could not locate executable DF
        customize IntelItaniumVisualFCompiler
        Could not locate executable efl
        customize Gnu95FCompiler
        Could not locate executable gfortran
        Could not locate executable f95
        customize G95FCompiler
        Could not locate executable g95
        customize IntelEM64VisualFCompiler
        customize IntelEM64TFCompiler
        Could not locate executable efort
        Could not locate executable efc
        customize PGroupFlangCompiler
        Could not locate executable flang
        don't know how to compile Fortran code on platform 'nt'
          NOT AVAILABLE

        atlas_3_10_blas_threads_info:
        Setting PTATLAS=ATLAS
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries tatlas not found in ['C:\\Users\\Andrew Freiburger\\AppData\\Local\\Programs\\Python\\Python39\\lib', 'C:\\', 'C:\\Users\\Andrew Freiburger\\AppData\\Local\\Programs\\Python\\Python39\\libs']
          NOT AVAILABLE

        atlas_3_10_blas_info:
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries satlas not found in ['C:\\Users\\Andrew Freiburger\\AppData\\Local\\Programs\\Python\\Python39\\lib', 'C:\\', 'C:\\Users\\Andrew Freiburger\\AppData\\Local\\Programs\\Python\\Python39\\libs']
          NOT AVAILABLE

        atlas_blas_threads_info:
        Setting PTATLAS=ATLAS
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries ptf77blas,ptcblas,atlas not found in ['C:\\Users\\Andrew Freiburger\\AppData\\Local\\Programs\\Python\\Python39\\lib', 'C:\\', 'C:\\Users\\Andrew Freiburger\\AppData\\Local\\Programs\\Python\\Python39\\libs']
          NOT AVAILABLE

        atlas_blas_info:
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries f77blas,cblas,atlas not found in ['C:\\Users\\Andrew Freiburger\\AppData\\Local\\Programs\\Python\\Python39\\lib', 'C:\\', 'C:\\Users\\Andrew Freiburger\\AppData\\Local\\Programs\\Python\\Python39\\libs']
          NOT AVAILABLE

        accelerate_info:
          NOT AVAILABLE

        C:\Users\Andrew Freiburger\AppData\Local\Temp\pip-install-iavo6_b9\numpy_d8b73cd7b07a411b9eaaed5c0f0ba3e9\numpy\distutils\system_info.py:690: UserWarning:
            Optimized (vendor) Blas libraries are not found.
            Falls back to netlib Blas library which has worse performance.
            A better performance should be easily gained by switching
            Blas library.
          self.calc_info()
        blas_info:
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries blas not found in ['C:\\Users\\Andrew Freiburger\\AppData\\Local\\Programs\\Python\\Python39\\lib', 'C:\\', 'C:\\Users\\Andrew Freiburger\\AppData\\Local\\Programs\\Python\\Python39\\libs']
          NOT AVAILABLE

        C:\Users\Andrew Freiburger\AppData\Local\Temp\pip-install-iavo6_b9\numpy_d8b73cd7b07a411b9eaaed5c0f0ba3e9\numpy\distutils\system_info.py:690: UserWarning:
            Blas (http://www.netlib.org/blas/) libraries not found.
            Directories to search for the libraries can be specified in the
            numpy/distutils/site.cfg file (section [blas]) or by setting
            the BLAS environment variable.
          self.calc_info()
        blas_src_info:
          NOT AVAILABLE

        C:\Users\Andrew Freiburger\AppData\Local\Temp\pip-install-iavo6_b9\numpy_d8b73cd7b07a411b9eaaed5c0f0ba3e9\numpy\distutils\system_info.py:690: UserWarning:
            Blas (http://www.netlib.org/blas/) sources not found.
            Directories to search for the sources can be specified in the
            numpy/distutils/site.cfg file (section [blas_src]) or by setting
            the BLAS_SRC environment variable.
          self.calc_info()
          NOT AVAILABLE

        'svnversion' is not recognized as an internal or external command,
        operable program or batch file.
        non-existing path in 'numpy\\distutils': 'site.cfg'
        lapack_opt_info:
        lapack_mkl_info:
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries mkl_rt not found in ['C:\\Users\\Andrew Freiburger\\AppData\\Local\\Programs\\Python\\Python39\\lib', 'C:\\', 'C:\\Users\\Andrew Freiburger\\AppData\\Local\\Programs\\Python\\Python39\\libs']
          NOT AVAILABLE

        openblas_lapack_info:
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries openblas not found in ['C:\\Users\\Andrew Freiburger\\AppData\\Local\\Programs\\Python\\Python39\\lib', 'C:\\', 'C:\\Users\\Andrew Freiburger\\AppData\\Local\\Programs\\Python\\Python39\\libs']
          NOT AVAILABLE

        openblas_clapack_info:
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries openblas,lapack not found in ['C:\\Users\\Andrew Freiburger\\AppData\\Local\\Programs\\Python\\Python39\\lib', 'C:\\', 'C:\\Users\\Andrew Freiburger\\AppData\\Local\\Programs\\Python\\Python39\\libs']
          NOT AVAILABLE

        flame_info:
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries flame not found in ['C:\\Users\\Andrew Freiburger\\AppData\\Local\\Programs\\Python\\Python39\\lib', 'C:\\', 'C:\\Users\\Andrew Freiburger\\AppData\\Local\\Programs\\Python\\Python39\\libs']
          NOT AVAILABLE

        atlas_3_10_threads_info:
        Setting PTATLAS=ATLAS
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries lapack_atlas not found in C:\Users\Andrew Freiburger\AppData\Local\Programs\Python\Python39\lib
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries tatlas,tatlas not found in C:\Users\Andrew Freiburger\AppData\Local\Programs\Python\Python39\lib
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries lapack_atlas not found in C:\
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries tatlas,tatlas not found in C:\
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries lapack_atlas not found in C:\Users\Andrew Freiburger\AppData\Local\Programs\Python\Python39\libs
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries tatlas,tatlas not found in C:\Users\Andrew Freiburger\AppData\Local\Programs\Python\Python39\libs
        <class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
          NOT AVAILABLE

        atlas_3_10_info:
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries lapack_atlas not found in C:\Users\Andrew Freiburger\AppData\Local\Programs\Python\Python39\lib
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries satlas,satlas not found in C:\Users\Andrew Freiburger\AppData\Local\Programs\Python\Python39\lib
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries lapack_atlas not found in C:\
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries satlas,satlas not found in C:\
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries lapack_atlas not found in C:\Users\Andrew Freiburger\AppData\Local\Programs\Python\Python39\libs
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries satlas,satlas not found in C:\Users\Andrew Freiburger\AppData\Local\Programs\Python\Python39\libs
        <class 'numpy.distutils.system_info.atlas_3_10_info'>
          NOT AVAILABLE

        atlas_threads_info:
        Setting PTATLAS=ATLAS
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries lapack_atlas not found in C:\Users\Andrew Freiburger\AppData\Local\Programs\Python\Python39\lib
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries ptf77blas,ptcblas,atlas not found in C:\Users\Andrew Freiburger\AppData\Local\Programs\Python\Python39\lib
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries lapack_atlas not found in C:\
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries ptf77blas,ptcblas,atlas not found in C:\
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries lapack_atlas not found in C:\Users\Andrew Freiburger\AppData\Local\Programs\Python\Python39\libs
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries ptf77blas,ptcblas,atlas not found in C:\Users\Andrew Freiburger\AppData\Local\Programs\Python\Python39\libs
        <class 'numpy.distutils.system_info.atlas_threads_info'>
          NOT AVAILABLE

        atlas_info:
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries lapack_atlas not found in C:\Users\Andrew Freiburger\AppData\Local\Programs\Python\Python39\lib
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries f77blas,cblas,atlas not found in C:\Users\Andrew Freiburger\AppData\Local\Programs\Python\Python39\lib
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries lapack_atlas not found in C:\
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries f77blas,cblas,atlas not found in C:\
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries lapack_atlas not found in C:\Users\Andrew Freiburger\AppData\Local\Programs\Python\Python39\libs
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries f77blas,cblas,atlas not found in C:\Users\Andrew Freiburger\AppData\Local\Programs\Python\Python39\libs
        <class 'numpy.distutils.system_info.atlas_info'>
          NOT AVAILABLE

        lapack_info:
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        customize MSVCCompiler
          libraries lapack not found in ['C:\\Users\\Andrew Freiburger\\AppData\\Local\\Programs\\Python\\Python39\\lib', 'C:\\', 'C:\\Users\\Andrew Freiburger\\AppData\\Local\\Programs\\Python\\Python39\\libs']
          NOT AVAILABLE

        C:\Users\Andrew Freiburger\AppData\Local\Temp\pip-install-iavo6_b9\numpy_d8b73cd7b07a411b9eaaed5c0f0ba3e9\numpy\distutils\system_info.py:1712: UserWarning:
            Lapack (http://www.netlib.org/lapack/) libraries not found.
            Directories to search for the libraries can be specified in the
            numpy/distutils/site.cfg file (section [lapack]) or by setting
            the LAPACK environment variable.
          if getattr(self, '_calc_info_{}'.format(lapack))():
        lapack_src_info:
          NOT AVAILABLE

        C:\Users\Andrew Freiburger\AppData\Local\Temp\pip-install-iavo6_b9\numpy_d8b73cd7b07a411b9eaaed5c0f0ba3e9\numpy\distutils\system_info.py:1712: UserWarning:
            Lapack (http://www.netlib.org/lapack/) sources not found.
            Directories to search for the sources can be specified in the
            numpy/distutils/site.cfg file (section [lapack_src]) or by setting
            the LAPACK_SRC environment variable.
          if getattr(self, '_calc_info_{}'.format(lapack))():
          NOT AVAILABLE

        C:\Users\Andrew Freiburger\AppData\Local\Programs\Python\Python39\lib\distutils\dist.py:274: UserWarning: Unknown distribution option: 'define_macros'
          warnings.warn(msg)
        running install
        running build
        running config_cc
        unifing config_cc, config, build_clib, build_ext, build commands --compiler options
        running config_fc
        unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
        running build_src
        build_src
        building py_modules sources
        creating build
        creating build\src.win-amd64-3.9
        creating build\src.win-amd64-3.9\numpy
        creating build\src.win-amd64-3.9\numpy\distutils
        building library "npymath" sources
        No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
        error: Microsoft Visual C++ 14.0 or greater is required. Get it with "Microsoft C++ Build Tools": https://visualstudio.microsoft.com/visual-cpp-build-tools/
        [end of output]

        note: This error originates from a subprocess, and is likely not a problem with pip.
      error: legacy-install-failure

      Encountered error while trying to install package.

      numpy

      note: This is an issue with the package mentioned above, not pip.
      hint: See above for output from the failure.
      [end of output]

  note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error

× pip subprocess to install build dependencies did not run successfully.
│ exit code: 1
╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip.