Pfam database is outdated

[Jidgdoi]

Hi,

Your "hgnc2pfam.rdb" is completely outdated, and so all lollipops mutations don't match correctly.
It would be nice to update it, or in a more reliable and sustainable way, permit the user to query his own database or directly the Pfam website.

Otherwise, you did a nice and beautiful job to build this library !

Hope this message will reach you.

A fellow researcher.

[phoeguo]

Thank you for the suggestions. We will work on it shortly.

[Nitin123-4]

Any update on this?

[phoeguo]

I have updated Pfam (v33.1) and UniProt (date: 2020-08-24) to latest version. Please update the package through GitHub and check the domain mapping.

Also, could you please teach me which gene is different from this package and cbioportal?

I will add some examples about how to retrieve or create domain mappings soon.

[Nitin123-4]

Thanks for the update.

[Jidgdoi]

Many thanks for the update.
The gene PIM1 was different, but with your update you fixed it. I didn't check for further genes but if I find some, I'll let you know.

I will add some examples about how to retrieve or create domain mappings soon.

This is a good point, I saw your "prepare_data" folder.