From b8d1c62a19c549cc17c86b302fcc4c0ed32f6020 Mon Sep 17 00:00:00 2001
From: Romain Baville <romain.baville@external.totalenergies.com>
Date: Thu, 12 Feb 2026 14:48:42 +0100
Subject: [PATCH 01/11] limite vtk version to 9.5

---
 geos-geomechanics/pyproject.toml | 2 +-
 geos-mesh/pyproject.toml         | 2 +-
 geos-processing/pyproject.toml   | 2 +-
 3 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/geos-geomechanics/pyproject.toml b/geos-geomechanics/pyproject.toml
index be5ca9638..629444027 100644
--- a/geos-geomechanics/pyproject.toml
+++ b/geos-geomechanics/pyproject.toml
@@ -24,7 +24,7 @@ classifiers = [
 ]
 dependencies=[
     "geos-utils",
-    "vtk >= 9.3",
+    "vtk >= 9.3, < 9.6",
     "numpy >= 2.2",
     "pandas >= 2.2",
     "typing_extensions >= 4.12",
diff --git a/geos-mesh/pyproject.toml b/geos-mesh/pyproject.toml
index 06f278e63..e0138b0c8 100644
--- a/geos-mesh/pyproject.toml
+++ b/geos-mesh/pyproject.toml
@@ -28,7 +28,7 @@ classifiers = [
 requires-python = ">=3.10"
 
 dependencies = [
-    "vtk >= 9.3",
+    "vtk >= 9.3, < 9.6",
     "networkx >= 2.4",
     "tqdm >= 4.67",
     "numpy >= 2.2",
diff --git a/geos-processing/pyproject.toml b/geos-processing/pyproject.toml
index 13391180b..95dd7b1c6 100644
--- a/geos-processing/pyproject.toml
+++ b/geos-processing/pyproject.toml
@@ -32,7 +32,7 @@ dependencies = [
     "geos-geomechanics",
     "geos-utils",
     "geos-mesh",
-    "vtk >= 9.3",
+    "vtk >= 9.3, < 9.6",
     "numpy >= 2.2",
     "typing_extensions >= 4.12",
 ]

From b16336522d97437793f44b2641b3e984841675b0 Mon Sep 17 00:00:00 2001
From: Romain Baville <romain.baville@external.totalenergies.com>
Date: Fri, 13 Feb 2026 09:54:56 +0100
Subject: [PATCH 02/11] commit to run the ci

---
 geos-processing/pyproject.toml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/geos-processing/pyproject.toml b/geos-processing/pyproject.toml
index 95dd7b1c6..2e18ef4c4 100644
--- a/geos-processing/pyproject.toml
+++ b/geos-processing/pyproject.toml
@@ -44,6 +44,7 @@ Documentation = "https://geosx-geosx.readthedocs-hosted.com/projects/geosx-geosp
 Repository = "https://github.com/GEOS-DEV/geosPythonPackages.git"
 "Bug Tracker" = "https://github.com/GEOS-DEV/geosPythonPackages/issues"
 
+
 [project.optional-dependencies]
 build = [
   "build ~= 1.2"

From e3b1dbd81e2bc6a1ca1f58e35cec14c51fc6c59d Mon Sep 17 00:00:00 2001
From: Jacques Franc <49998870+jafranc@users.noreply.github.com>
Date: Fri, 13 Feb 2026 11:08:14 +0100
Subject: [PATCH 03/11] Add setuptools to project dependencies

---
 geos-trame/pyproject.toml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/geos-trame/pyproject.toml b/geos-trame/pyproject.toml
index 4e93319bc..eb651366c 100644
--- a/geos-trame/pyproject.toml
+++ b/geos-trame/pyproject.toml
@@ -30,6 +30,7 @@ keywords = [
 ]
 
 dependencies = [
+    "setuptools",
     "typing-extensions==4.12.2",
     "trame==3.6.5",
     "trame-vuetify==2.7.1",

From a0be9ee31db12b32d1a6d334d5c1ac1e033a31f7 Mon Sep 17 00:00:00 2001
From: Jacques Franc <49998870+jafranc@users.noreply.github.com>
Date: Fri, 13 Feb 2026 11:31:54 +0100
Subject: [PATCH 04/11] Add setuptools to requirements.txt

---
 geos-trame/tests/requirements.txt | 1 +
 1 file changed, 1 insertion(+)

diff --git a/geos-trame/tests/requirements.txt b/geos-trame/tests/requirements.txt
index bf9d17bcc..afd7aff26 100644
--- a/geos-trame/tests/requirements.txt
+++ b/geos-trame/tests/requirements.txt
@@ -1,3 +1,4 @@
 pytest
 pytest-seleniumbase
 pytest-xprocess
+setuptools

From 5b239cf77ccf920344b7c714eebefdab367ec877 Mon Sep 17 00:00:00 2001
From: Jacques Franc <49998870+jafranc@users.noreply.github.com>
Date: Fri, 13 Feb 2026 14:03:08 +0100
Subject: [PATCH 05/11] Modify pytest command to disable HTML output

---
 .github/workflows/python-package.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
index 48f10cce4..52ae529d4 100644
--- a/.github/workflows/python-package.yml
+++ b/.github/workflows/python-package.yml
@@ -130,7 +130,7 @@ jobs:
       run:
       # python -m pytest ./${{ matrix.package-name }} --doctest-modules --junitxml=junit/test-results.xml --cov-report=xml --cov-report=html |
       # wrap pytest to avoid error when no tests in the package
-        sh -c 'python -m pytest ./${{ matrix.package-name }}; ret=$?; [ $ret = 5 ] && exit 0 || exit $ret'
+        sh -c 'python -m pytest -p no:html ./${{ matrix.package-name }}; ret=$?; [ $ret = 5 ] && exit 0 || exit $ret'
 
   # check if GEOS has label for testing GEOS integration
   check_integration_label:

From 1b4cf5c1f804625e5af3c5bf9e197c057f45f8f2 Mon Sep 17 00:00:00 2001
From: Jacques Franc <49998870+jafranc@users.noreply.github.com>
Date: Fri, 13 Feb 2026 14:15:47 +0100
Subject: [PATCH 06/11] Update Python package workflow to include setuptools

Added installation of setuptools and pytest-html to the workflow.
---
 .github/workflows/python-package.yml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
index 52ae529d4..623599a68 100644
--- a/.github/workflows/python-package.yml
+++ b/.github/workflows/python-package.yml
@@ -109,6 +109,7 @@ jobs:
       run: |
         python -m pip install --upgrade pip
         python -m pip install pytest yapf toml
+        python -m pip install --upgrade pip setuptools pytest-html
 
         DEPS="${{ matrix.dependencies || '' }}"
 
@@ -130,7 +131,7 @@ jobs:
       run:
       # python -m pytest ./${{ matrix.package-name }} --doctest-modules --junitxml=junit/test-results.xml --cov-report=xml --cov-report=html |
       # wrap pytest to avoid error when no tests in the package
-        sh -c 'python -m pytest -p no:html ./${{ matrix.package-name }}; ret=$?; [ $ret = 5 ] && exit 0 || exit $ret'
+        sh -c 'python -m pytest ./${{ matrix.package-name }}; ret=$?; [ $ret = 5 ] && exit 0 || exit $ret'
 
   # check if GEOS has label for testing GEOS integration
   check_integration_label:

From 2fa626d99cb801dc3fb2b3373a7ed59f8bf11408 Mon Sep 17 00:00:00 2001
From: Jacques Franc <49998870+jafranc@users.noreply.github.com>
Date: Fri, 13 Feb 2026 15:08:17 +0100
Subject: [PATCH 07/11] Update python-package.yml

---
 .github/workflows/python-package.yml | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
index 623599a68..8b45554b2 100644
--- a/.github/workflows/python-package.yml
+++ b/.github/workflows/python-package.yml
@@ -108,8 +108,7 @@ jobs:
       # working-directory: ./${{ matrix.package-name }}
       run: |
         python -m pip install --upgrade pip
-        python -m pip install pytest yapf toml
-        python -m pip install --upgrade pip setuptools pytest-html
+        python -m pip install pytest yapf toml "pytest-html>=4.0.0"
 
         DEPS="${{ matrix.dependencies || '' }}"
 

From 146855ddf9c227fa971bfbdbc5dbbfb359e45552 Mon Sep 17 00:00:00 2001
From: Jacques Franc <49998870+jafranc@users.noreply.github.com>
Date: Fri, 13 Feb 2026 15:42:00 +0100
Subject: [PATCH 08/11] Add setuptools to test dependencies

---
 geos-trame/pyproject.toml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/geos-trame/pyproject.toml b/geos-trame/pyproject.toml
index eb651366c..73d7a028d 100644
--- a/geos-trame/pyproject.toml
+++ b/geos-trame/pyproject.toml
@@ -67,6 +67,7 @@ dev = [
     "pre-commit"
 ]
 test = [
+    "setuptools",
     "pytest==8.3.3",
     "pytest-seleniumbase==4.31.6",
     "pixelmatch==0.3.0",

From d229f16e7b7ab4e8fc00e8bce464c77ca08be516 Mon Sep 17 00:00:00 2001
From: Jacques Franc <49998870+jafranc@users.noreply.github.com>
Date: Fri, 13 Feb 2026 16:02:22 +0100
Subject: [PATCH 09/11] Modify Python version and install setuptools

Updated Python version matrix and added setuptools installation.
---
 .github/workflows/python-package.yml | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
index 8b45554b2..6d53beae3 100644
--- a/.github/workflows/python-package.yml
+++ b/.github/workflows/python-package.yml
@@ -57,7 +57,7 @@ jobs:
       fail-fast: false
       max-parallel: 3
       matrix:
-        python-version: ["3.10","3.11","3.12"]
+        python-version: ["3.12"]
         package-name:
           - geos-ats
           - geos-utils
@@ -108,7 +108,9 @@ jobs:
       # working-directory: ./${{ matrix.package-name }}
       run: |
         python -m pip install --upgrade pip
-        python -m pip install pytest yapf toml "pytest-html>=4.0.0"
+        # Install setuptools first to provide pkg_resources for older plugins
+        python -m pip install setuptools
+        python -m pip install pytest yapf toml pytest-html
 
         DEPS="${{ matrix.dependencies || '' }}"
 

From 9345b32465cf4a471a8d155f6e4c0a20f48d9ab7 Mon Sep 17 00:00:00 2001
From: Jacques Franc <49998870+jafranc@users.noreply.github.com>
Date: Fri, 13 Feb 2026 16:28:41 +0100
Subject: [PATCH 10/11] Update python-package.yml

---
 .github/workflows/python-package.yml | 30 +++++++++++++++-------------
 1 file changed, 16 insertions(+), 14 deletions(-)

diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
index 6d53beae3..51f4e2229 100644
--- a/.github/workflows/python-package.yml
+++ b/.github/workflows/python-package.yml
@@ -59,18 +59,18 @@ jobs:
       matrix:
         python-version: ["3.12"]
         package-name:
-          - geos-ats
-          - geos-utils
-          - geos-geomechanics
-          - geos-mesh
-          - geos-processing
-          - geos-timehistory
+          # - geos-ats
+          # - geos-utils
+          # - geos-geomechanics
+          # - geos-mesh
+          # - geos-processing
+          # - geos-timehistory
           - geos-trame
-          - geos-xml-tools
-          - geos-xml-viewer
-          - mesh-doctor
-          - hdf5-wrapper
-          - pygeos-tools
+          # - geos-xml-tools
+          # - geos-xml-viewer
+          # - mesh-doctor
+          # - hdf5-wrapper
+          # - pygeos-tools
         include:
           - package-name: geos-geomechanics
             dependencies: "geos-utils"
@@ -108,9 +108,7 @@ jobs:
       # working-directory: ./${{ matrix.package-name }}
       run: |
         python -m pip install --upgrade pip
-        # Install setuptools first to provide pkg_resources for older plugins
-        python -m pip install setuptools
-        python -m pip install pytest yapf toml pytest-html
+
 
         DEPS="${{ matrix.dependencies || '' }}"
 
@@ -123,6 +121,10 @@ jobs:
 
         echo "Installing main package..."
         python -m pip install ./${{ matrix.package-name }}/[test]
+        # LWS Install setuptools first to provide pkg_resources for older plugins
+        python -m pip install setuptools
+        python -m pip install "pytest>=8.0.0" yapf toml "pytest-html>=4.0.0"
+        
     - name: Lint with yapf
       # working-directory: ./${{ matrix.package-name }}
       run: |

From 6038583957f59322e8b1d9068751e7f569ea1dc2 Mon Sep 17 00:00:00 2001
From: Jacques Franc <49998870+jafranc@users.noreply.github.com>
Date: Fri, 13 Feb 2026 16:33:41 +0100
Subject: [PATCH 11/11] restore version

---
 .github/workflows/python-package.yml | 24 ++++++++++++------------
 1 file changed, 12 insertions(+), 12 deletions(-)

diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
index 51f4e2229..4db9621cb 100644
--- a/.github/workflows/python-package.yml
+++ b/.github/workflows/python-package.yml
@@ -57,20 +57,20 @@ jobs:
       fail-fast: false
       max-parallel: 3
       matrix:
-        python-version: ["3.12"]
+        python-version: ["3.10","3.11","3.12"]
         package-name:
-          # - geos-ats
-          # - geos-utils
-          # - geos-geomechanics
-          # - geos-mesh
-          # - geos-processing
-          # - geos-timehistory
+          - geos-ats
+          - geos-utils
+          - geos-geomechanics
+          - geos-mesh
+          - geos-processing
+          - geos-timehistory
           - geos-trame
-          # - geos-xml-tools
-          # - geos-xml-viewer
-          # - mesh-doctor
-          # - hdf5-wrapper
-          # - pygeos-tools
+          - geos-xml-tools
+          - geos-xml-viewer
+          - mesh-doctor
+          - hdf5-wrapper
+          - pygeos-tools
         include:
           - package-name: geos-geomechanics
             dependencies: "geos-utils"