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allow indication of individual variant effects #1971

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nathandunn opened this issue Dec 3, 2018 · 3 comments · Fixed by #2102

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commented Dec 3, 2018

Build on the variant annotation and sequence alteration code, to allow:

  • right-click variant annotation to "view effect" on annotated isoforms
  • activates the sequence alteration code for the variant effect
  • "activated" variant should be highlighted
@nathandunn nathandunn added this to the 2.1.1 milestone Dec 3, 2018
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commented Dec 3, 2018

@nathandunn nathandunn modified the milestones: 2.1.1, 2.2.1 Dec 5, 2018
@nathandunn nathandunn modified the milestones: 2.3, 2.4, 2.4.1, 2.4.0 Jan 29, 2019
@nathandunn nathandunn removed the discussion label Jan 31, 2019
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commented Jan 31, 2019

@nathandunn nathandunn added the ready label Feb 8, 2019
@nathandunn nathandunn modified the milestones: 2.4.0, 2.5.0 Feb 8, 2019
@nathandunn nathandunn removed the ready label Feb 8, 2019
@nathandunn nathandunn modified the milestones: 2.5.0, 2.4.0 Feb 11, 2019
@nathandunn nathandunn added the ready label Feb 19, 2019
@nathandunn nathandunn removed the ready label Mar 1, 2019
@nathandunn nathandunn added the ready label Mar 8, 2019
@nathandunn nathandunn added this to To do in Apollo Mar 16, 2019
@nathandunn nathandunn moved this from To do to In progress in Apollo Mar 17, 2019
@nathandunn nathandunn moved this from In progress to To do in Apollo Mar 21, 2019
@nathandunn nathandunn moved this from To do to In progress in Apollo Mar 25, 2019
@ghost ghost assigned nathandunn Mar 25, 2019
@ghost ghost added in progress and removed ready labels Mar 25, 2019
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commented Mar 25, 2019

Going to punt and have a

  • "view sequence alteration from transcript" . . and add a comment or something to indicate this . . . "view effect of variant XYZ".
  • "remove sequence alteration for variant" as well
@nathandunn nathandunn referenced this issue Mar 26, 2019
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Apollo automation moved this from In progress to Done Mar 26, 2019
@ghost ghost removed the in progress label Mar 26, 2019
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