@nathandunn nathandunn released this Jun 21, 2018 · 5 commits to master since this release

Assets 2

2.1.0 Official Release

Some of the new features include:

  • Added ability to annotate a variant from VCF evidence tracks 1892
  • Allow forced assignment of transcript to a gene #1851
  • Added proper Instructor and Organism Admin permission level #1178
  • Indicate start / stop codons with color #1852
  • Set the default biotype on track #1861

Some important bug fixes:

  • Prevents setting bad translation starts and ends #1838
  • Fixed descriptor leak when loading bulk loading GFF3 #1187
  • Fixed adding ability to create sequence alterations of uneven length #1883
  • Fixed problem where canonical splice-sites were not recognized if sequence was being shown in lower-case #1879
  • In some cases when the name store is not properly configured, the location is not remembered #1895

Note You will need to install node 6 or better.
Note If updating your jbrowse settings from previous versions in apollo-config.groovy you will need to set the JBrowse to use the currently tagged version or better. If this is commented out, however, the default will work.
Note Some issues with new tomcat and addStore / addTracks RFC 7230 and RFC 3986. See http://genomearchitect.readthedocs.io/en/latest/Setup.html?highlight=RFC#json-in-the-url-with-newer-versions-of-tomcat

The complete change log can be found at: https://github.com/GMOD/Apollo/blob/master/ChangeLog.md

Please review the documentation pages for more details: http://genomearchitect.readthedocs.io/en/stable/

Note: You can find a guide upgrading existing Apollo installations here:
http://genomearchitect.readthedocs.io/en/stable/Migration.html

Please open a GitHub issue if you find any problems: https://github.com/GMOD/Apollo/issues/

Active mailing list (apollo@lists.lbl.gov) and archive.