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Commits on Jun 4, 2009
  1. ready for release 1.96

    lstein committed Jun 4, 2009
  2. Added "hat" and "hidden" glyphs, and changed way that the "line" glyp…

    …h works in order to support DAS 1.5.
    lstein committed Jun 4, 2009
Commits on Jun 3, 2009
Commits on May 30, 2009
  1. prepare for 1.95 release

    lstein committed May 30, 2009
Commits on May 29, 2009
  1. Fixed bad wiggle load defaults

    lstein committed May 29, 2009
Commits on May 20, 2009
  1. Initial commit for rainbow_gene.pm

    Peter Ruzanov committed May 20, 2009
Commits on May 15, 2009
  1. Improved gradient calculation

    Peter Ruzanov committed May 15, 2009
Commits on May 11, 2009
  1. adding rainbow_gene glyph and update of heat_map glyph

    Sheldon McKay committed May 11, 2009
Commits on May 8, 2009
Commits on Apr 29, 2009
  1. version bump

    lstein committed Apr 29, 2009
  2. this will be version 1.94

    lstein committed Apr 29, 2009
Commits on Apr 24, 2009
  1. support for bam density plots

    lstein committed Apr 24, 2009
Commits on Apr 23, 2009
  1. Added a "fast" bumping option suitable for very dense tracks in which…

    … all features have identical height. Activate it using -bump=>3 or -bump=>"fast".
    lstein committed Apr 23, 2009
Commits on Apr 21, 2009
Commits on Apr 14, 2009
  1. code changes reflect updates to wiggle_xyplot

    Peter Ruzanov committed Apr 14, 2009
Commits on Apr 2, 2009
Commits on Mar 31, 2009
  1. updated changes

    lstein committed Mar 31, 2009
  2. fixed glob() issue that was breaking gbrowse; made glyph_help.pl work…

    … better in windows environment
    lstein committed Mar 31, 2009
Commits on Mar 26, 2009
Commits on Mar 23, 2009
  1. added more auto-documentation; corrected errors in rendering of conne…

    …cting lines at end of multilevel genes
    lstein committed Mar 23, 2009
Commits on Mar 22, 2009
  1. scripts/glyph_help.pl is missing, dropping it from Build.PL so "./Bui…

    …ld disttest" passes
    Allen Day committed Mar 22, 2009
Commits on Mar 20, 2009
Commits on Mar 17, 2009
  1. this will be release 1.91

    lstein committed Mar 17, 2009
  2. wiggle loader now defaults to 2stdev clipping; wiggle_density glyph r…

    …ecognizes local and global scaling; default smoothing parameters now do less smoothing
    lstein committed Mar 17, 2009
  3. support get_tag_values() and get_SeqFeatures() calls rather than nons…

    …tandard Bio::Graphics::Feature API
    lstein committed Mar 17, 2009
Commits on Mar 16, 2009
Commits on Mar 15, 2009
  1. Optimized Bio::Graphics::Wiggle to sample directly from disk when the…

    … desired visualization size is significantly (less than 100 fold) smaller than the length of the region to be sampled.
    lstein committed Mar 15, 2009
  2. "fixed" wiggle data retrieval so that it samples directly from disk w…

    …hen appropriate rather than reading a huge region into memory and then sampling over it; boundaries are heuristic at the moment
    lstein committed Mar 15, 2009