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Commits on May 13, 2010
  1. release tag

    lstein committed May 13, 2010
  2. Fixed init_code so that it is invoked when retrieving a cached copy o…

    lstein committed May 13, 2010
    …f parsed featurefiles.
Commits on May 9, 2010
Commits on May 8, 2010
  1. fixed manifest

    lstein committed May 8, 2010
Commits on May 7, 2010
  1. bumped version number

    lstein committed May 7, 2010
  2. added a cachedir method

    lstein committed May 7, 2010
Commits on May 5, 2010
  1. Segments glyph now displays correct mismatch color for sequences that…

    lstein committed May 5, 2010
    … begin or end with soft clips. Indels displayed in correct color when indel begins or ends outside current visible region.
Commits on Apr 29, 2010
  1. bicolor_pivot now controls not only colors but the placement of scale…

    Peter Ruzanov committed Apr 29, 2010
    … axis in wiggle_xyplot, min and max options added
Commits on Apr 22, 2010
  1. squashed unopened filehandle warning when reading a featurefile from …

    rbuels committed Apr 22, 2010
    …a string filehandle
  2. fixed crash with cds glyph - BGG::generic::get_dna() can sometimes be…

    rbuels committed Apr 22, 2010
    … called with a Bio::*Seq, not just a feature
Commits on Apr 20, 2010
  1. version bump

    lstein committed Apr 20, 2010
  2. implemented caching scheme

    lstein committed Apr 20, 2010
Commits on Apr 18, 2010
  1. fixed problems with pads and large deletions in segments glyph; fixed…

    lstein committed Apr 18, 2010
    … performance of wiggle loader
Commits on Apr 8, 2010
Commits on Apr 4, 2010
  1. fixed cds glyph crash under Bio::DB::SeqFeature - $feature can be a B…

    rbuels committed Apr 4, 2010
    …io::DB::SeqFeature::Segment, which has no method() method
Commits on Apr 2, 2010
Commits on Mar 31, 2010
Commits on Mar 26, 2010
  1. Fixed display of protein sequence in genes when -draw_protein is true…

    lstein committed Mar 26, 2010
    ….; -show_mismatch option now takes following arguments: 0 (false), "always", "base level" (draw only when DNA is in view), or a number, in which case mismatches will only be drawn when the length of the window is <= that number. For compatibility, a value of "1" is the same as "base level."
Commits on Mar 25, 2010
  1. added wiggle test

    lstein committed Mar 25, 2010
Commits on Mar 23, 2010
  1. fixed bug in transcript2 glyph that caused terminal exon to be tapere…

    lstein committed Mar 23, 2010
    …d AND to have the little directional arrow
Commits on Mar 22, 2010
  1. version bump

    lstein committed Mar 22, 2010
  2. fixed regression tests

    lstein committed Mar 22, 2010
Commits on Mar 16, 2010
  1. removed junk code in hybrid_plot, improved regexp to better handle se…

    Peter Ruzanov committed Mar 16, 2010
    …lect stanza parameter
Commits on Mar 15, 2010
Commits on Mar 14, 2010
Commits on Feb 25, 2010
  1. version bump

    lstein committed Feb 25, 2010
  2. fixed hard-clipping

    lstein committed Feb 25, 2010
Commits on Feb 9, 2010