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Commits on Dec 20, 2010
  1. @lstein

    release tag

    lstein committed Dec 20, 2010
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    removed a dangling warning

    lstein committed Dec 20, 2010
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Commits on Dec 17, 2010
  1. @lstein

    added z_score scaling features to xyplots. Warning: there are debuggi…

    lstein committed Dec 17, 2010
    …ng statements left here!
Commits on Dec 16, 2010
  1. @lstein
Commits on Dec 15, 2010
  1. Added flip sign option to hybrid_plot: allows to draw signal (-Seq re…

    Peter Ruzanov committed Dec 15, 2010
    …ads primarily) as data of negative-value, useful for drawing data for positive- and negative- strands
Commits on Dec 7, 2010
  1. Fixed a bug from my last commit.

    Tony deCatanzaro committed Dec 7, 2010
Commits on Dec 6, 2010
  1. Fixed problem with grid lines covering information in hybrid_plot

    Tony deCatanzaro committed Dec 6, 2010
    Added support for more than two wiggle files to hybrid_plot
Commits on Nov 29, 2010
  1. @lstein

    Made handling of min/max scale calculations consistent across all xyp…

    lstein committed Nov 29, 2010
    …lot glyphs and their derivatives
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Commits on Nov 25, 2010
  1. @lstein
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    added horizontal grid lines to all xyplots, and default to showing th…

    lstein committed Nov 25, 2010
    …e scale at left, right and center
Commits on Nov 24, 2010
Commits on Nov 23, 2010
  1. switching to File::Glob

    Scott Cain committed Nov 23, 2010
Commits on Nov 19, 2010
  1. Fixed a problem with color calculation by heat_map.pm

    Peter Ruzanov committed Nov 19, 2010
Commits on Nov 17, 2010
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Commits on Nov 16, 2010
  1. @lstein

    In segments glyph, fixed treatment of soft clipping as an "insertion"…

    lstein committed Nov 16, 2010
    …; this will avoid the insertion color from appearing at the ends of soft-clipped reads.
Commits on Nov 12, 2010
  1. @lstein

    fixed error in chromosome & global scaling when using vista plot with…

    lstein committed Nov 12, 2010
    … underlying xyplot to show signal
  2. A minor fix for vista_plot's imagemap function

    Peter Ruzanov committed Nov 12, 2010
Commits on Nov 11, 2010
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Commits on Nov 10, 2010
  1. Fixed missed labels in wiskers mode

    Peter Ruzanov committed Nov 10, 2010
Commits on Nov 9, 2010
  1. Some fixes, vista_plot can now draw stdev band and mean

    Peter Ruzanov committed Nov 9, 2010
  2. @lstein

    In segments glyph, fixed bleedover of "deletion" color when a deletio…

    lstein committed Nov 9, 2010
    …n is followed by an insertion.
Commits on Nov 7, 2010
  1. @lstein

    fixed broken whisker plot

    lstein committed Nov 7, 2010
  2. @lstein

    got vista plot working again

    lstein committed Nov 7, 2010
Commits on Nov 3, 2010
  1. @lstein

    Distinguish between "chromosome" and "global" autoscaling in the xypl…

    lstein committed Nov 3, 2010
    …ot and density glyphs.Global autoscaling only works when underlying database is bigwig. ; Regularized options which select glyph subtypes with an option named "glyph_subtype".
Commits on Nov 1, 2010
  1. @lstein

    fixed MANIFEST

    lstein committed Nov 1, 2010
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    resynced MANIFEST

    lstein committed Nov 1, 2010
Commits on Oct 29, 2010
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Commits on Oct 28, 2010
  1. @lstein

    trial port of jbrowse rectangle layout code to see if it does better …

    lstein committed Oct 28, 2010
    …than existing algorithm
  2. Fixed regex problem in vista_plot: it was failing to draw files with …

    Peter Ruzanov committed Oct 28, 2010
    …wigdb extension
  3. Fixed regex problem in hybrid_plot: it was failing to draw files with…

    Peter Ruzanov committed Oct 28, 2010
    … wigdb extension
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