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Commits on Feb 4, 2011
  1. release tag

    lstein committed Feb 4, 2011
  2. Made "record_label_positions" default to "true" for wiggle_density p…

    …lot. This activates a fixed-position floating label when density plots are being shown in GBrowse.
    lstein committed Feb 4, 2011
Commits on Dec 22, 2010
  1. Made some changes to allow xyplot subtracks to be drawn on a single p…

    …lot.
    Tony deCatanzaro committed Dec 22, 2010
Commits on Dec 20, 2010
  1. removed a dangling warning

    lstein committed Dec 20, 2010
Commits on Dec 17, 2010
  1. added z_score scaling features to xyplots. Warning: there are debuggi…

    …ng statements left here!
    lstein committed Dec 17, 2010
Commits on Dec 16, 2010
Commits on Dec 15, 2010
  1. Added flip sign option to hybrid_plot: allows to draw signal (-Seq re…

    …ads primarily) as data of negative-value, useful for drawing data for positive- and negative- strands
    Peter Ruzanov committed Dec 15, 2010
Commits on Dec 7, 2010
  1. Fixed a bug from my last commit.

    Tony deCatanzaro committed Dec 7, 2010
Commits on Dec 6, 2010
  1. Fixed problem with grid lines covering information in hybrid_plot

    Added support for more than two wiggle files to hybrid_plot
    Tony deCatanzaro committed Dec 6, 2010
Commits on Nov 29, 2010
  1. Made handling of min/max scale calculations consistent across all xyp…

    …lot glyphs and their derivatives
    lstein committed Nov 29, 2010
Commits on Nov 25, 2010
  1. added horizontal grid lines to all xyplots, and default to showing th…

    …e scale at left, right and center
    lstein committed Nov 25, 2010
Commits on Nov 24, 2010
Commits on Nov 23, 2010
  1. switching to File::Glob

    Scott Cain committed Nov 23, 2010
Commits on Nov 19, 2010
  1. Fixed a problem with color calculation by heat_map.pm

    Peter Ruzanov committed Nov 19, 2010
Commits on Nov 17, 2010
Commits on Nov 16, 2010
  1. In segments glyph, fixed treatment of soft clipping as an "insertion"…

    …; this will avoid the insertion color from appearing at the ends of soft-clipped reads.
    lstein committed Nov 16, 2010
Commits on Nov 12, 2010
  1. fixed error in chromosome & global scaling when using vista plot with…

    … underlying xyplot to show signal
    lstein committed Nov 12, 2010
  2. A minor fix for vista_plot's imagemap function

    Peter Ruzanov committed Nov 12, 2010
Commits on Nov 11, 2010
Commits on Nov 10, 2010
  1. Fixed missed labels in wiskers mode

    Peter Ruzanov committed Nov 10, 2010
Commits on Nov 9, 2010
  1. Some fixes, vista_plot can now draw stdev band and mean

    Peter Ruzanov committed Nov 9, 2010
  2. In segments glyph, fixed bleedover of "deletion" color when a deletio…

    …n is followed by an insertion.
    lstein committed Nov 9, 2010
Commits on Nov 7, 2010
  1. fixed broken whisker plot

    lstein committed Nov 7, 2010
  2. got vista plot working again

    lstein committed Nov 7, 2010
Commits on Nov 3, 2010
  1. Distinguish between "chromosome" and "global" autoscaling in the xypl…

    …ot and density glyphs.Global autoscaling only works when underlying database is bigwig. ; Regularized options which select glyph subtypes with an option named "glyph_subtype".
    lstein committed Nov 3, 2010
Commits on Nov 1, 2010
  1. fixed MANIFEST

    lstein committed Nov 1, 2010
  2. resynced MANIFEST

    lstein committed Nov 1, 2010
Commits on Oct 29, 2010
Commits on Oct 28, 2010
  1. trial port of jbrowse rectangle layout code to see if it does better …

    …than existing algorithm
    lstein committed Oct 28, 2010