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Commits on May 25, 2011
  1. quench warning in FeatureFile

    lstein committed May 25, 2011
  2. workaround bioperl 1.069 problem in which Bio::DB::SeqFeature::Store:…

    …:memory->types() does not return correct result
    lstein committed May 25, 2011
Commits on May 13, 2011
Commits on Apr 12, 2011
  1. Changed almost all occurrences of attributes() into eval{$feature->ge…

    …t_tag_values()} to achieve compatibility with Bio::SeqFeatureI. One exception is in spectrogram glyph, which depends on the non-standard behavior of attributes() when called with no args.
    lstein committed Apr 12, 2011
Commits on Apr 1, 2011
  1. Fixed the various "wiggle" glyphs so that scale is always drawn even …

    …if no data is to be shown in selected region.
    lstein committed Apr 1, 2011
Commits on Mar 14, 2011
  1. adding Jim Hu's operon glyph to manifest

    Scott Cain committed Mar 14, 2011
Commits on Mar 10, 2011
  1. version 2.19 ready for release

    lstein committed Mar 10, 2011
Commits on Mar 1, 2011
  1. Contributed by Jim Hu

    Scott Cain committed Mar 1, 2011
Commits on Feb 24, 2011
  1. Flip Sign option fixed for hybrid_plot

    Peter Ruzanov committed Feb 24, 2011
Commits on Feb 17, 2011
Commits on Feb 4, 2011
  1. Made "record_label_positions" default to "true" for wiggle_density p…

    …lot. This activates a fixed-position floating label when density plots are being shown in GBrowse.
    lstein committed Feb 4, 2011
Commits on Dec 22, 2010
  1. Made some changes to allow xyplot subtracks to be drawn on a single p…

    …lot.
    Tony deCatanzaro committed Dec 22, 2010
Commits on Dec 20, 2010
  1. removed a dangling warning

    lstein committed Dec 20, 2010
Commits on Dec 17, 2010
  1. added z_score scaling features to xyplots. Warning: there are debuggi…

    …ng statements left here!
    lstein committed Dec 17, 2010
Commits on Dec 16, 2010
Commits on Dec 15, 2010
  1. Added flip sign option to hybrid_plot: allows to draw signal (-Seq re…

    …ads primarily) as data of negative-value, useful for drawing data for positive- and negative- strands
    Peter Ruzanov committed Dec 15, 2010
Commits on Dec 7, 2010
  1. Fixed a bug from my last commit.

    Tony deCatanzaro committed Dec 7, 2010
Commits on Dec 6, 2010
  1. Fixed problem with grid lines covering information in hybrid_plot

    Added support for more than two wiggle files to hybrid_plot
    Tony deCatanzaro committed Dec 6, 2010
Commits on Nov 29, 2010
  1. Made handling of min/max scale calculations consistent across all xyp…

    …lot glyphs and their derivatives
    lstein committed Nov 29, 2010
Commits on Nov 25, 2010
  1. added horizontal grid lines to all xyplots, and default to showing th…

    …e scale at left, right and center
    lstein committed Nov 25, 2010
Commits on Nov 24, 2010
Commits on Nov 23, 2010
  1. switching to File::Glob

    Scott Cain committed Nov 23, 2010
Commits on Nov 19, 2010
  1. Fixed a problem with color calculation by heat_map.pm

    Peter Ruzanov committed Nov 19, 2010
Commits on Nov 17, 2010
Commits on Nov 16, 2010
  1. In segments glyph, fixed treatment of soft clipping as an "insertion"…

    …; this will avoid the insertion color from appearing at the ends of soft-clipped reads.
    lstein committed Nov 16, 2010