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new 'decorated_transcript' glyph #5

merged 6 commits into from

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This is the new 'decorated_transcript' glyph I was e-mailing about with Scott Cain and Lincoln Stein a month ago. Its intended use is to draw protein feature highlights specified in amino-acid coordinates (e.g., signal peptides, transmembrane regions, low-complexity regions, etc.) on top of gene models .

To see an example of how this looks like check out the image (t/data/decorated_transcript_t1.png) generated from the test script (t/

The 'decorated_gene' glyph, which is a new file also present in this pull request, is basically a 1:1 copy of the 'gene' glyph with 'processed_transcript' as its base class replaced by 'decorated_transcript'. This allows highlights to be drawn for multiple isoforms of the same gene.


Thank you for the new glyph, and terribly sorry it took over a year for me to respond to your pull request.

@lstein lstein merged commit c5369ee into from
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Commits on Feb 8, 2012
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