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Commits on Jan 15, 2017
  1. In-memory adaptor requires perl 1.007001 to run -- added this to READ…

    lstein committed Jan 15, 2017
    …ME and prerequisites
  2. Bump version to 2.56 - still needs testing

    Lincoln Stein committed Jan 15, 2017
  3. Merge remote-tracking branch 'origin/security-bug-fixes'

    Lincoln Stein committed Jan 15, 2017
  4. Merge pull request #50 from nathanweeks/issue/left-align-citation

    lstein committed Jan 15, 2017
    Left-align citation text in "?" menu.
  5. Merge pull request #54 from nathanweeks/issue/bio_graphics_ff_cache-p…

    lstein committed Jan 15, 2017
    …roliferation
    
    Avoid accumulating many .inverted files in the bio_graphics_ff_UID
  6. Merge pull request #55 from nathanweeks/issue/summary_mode

    lstein committed Jan 15, 2017
    Fix summary mode for features with no source_tag
  7. Merge pull request #56 from nathanweeks/issue/avoid-forking-if-no-work

    lstein committed Jan 15, 2017
    Don't spawn child processes if there are no uncached requests
  8. Merge pull request #57 from nathanweeks/feature/svg2pdf

    lstein committed Jan 15, 2017
    Support PDF generation with svg2pdf
  9. Merge pull request #59 from GMOD/scotts-minor-fixes

    lstein committed Jan 15, 2017
    addition of CGI::multi_param to silence warnings when running tests--…
Commits on Jan 6, 2017
  1. addition of CGI::multi_param to silence warnings when running tests--…

    scottcain committed Jan 6, 2017
    …not sure if this is the right thing to do from a security perspective though (for example, should some of these calls be in a scalar context instead?)
Commits on Dec 29, 2016
Commits on Dec 27, 2016
Commits on Jan 27, 2016
  1. Support PDF generation with svg2pdf

    nathanweeks committed Jan 27, 2016
    svg2pdf is much lighter-weight than inkscape, having far fewer
    dependencies, but utilizing the same underlying library (cairo) as
    inkscape to generate PDF from SVG.
Commits on Jul 2, 2015
  1. Don't spawn child processes when there are no uncached requests to

    nathanweeks committed Jul 2, 2015
    process. With Perl 5.18.4 running under mod_fcgid 2.3.9 on Apache
    2.2.29, this scenario would apparently result in the FastCGI process
    terminating after issuing the error: "SIGCHLD received, but no signal
    handler set."
Commits on Jun 25, 2015
  1. Fix summary mode for the case where the feature was a

    nathanweeks committed with User Weeks Jun 25, 2015
    Bio::DB::SeqFeature::Store has a type, but no source
    (e.g., the source column is "." in an input GFF3).
Commits on May 14, 2015
  1. Avoid accumulating many .inverted files in the bio_graphics_ff_UID

    nathanweeks committed May 14, 2015
    directory when using Perl >= 5.18 by sorting hash keys before computing
    their md5, which is used as part of the file name.
Commits on Mar 4, 2015
Commits on Oct 28, 2014
  1. Merge pull request #32 from keiranmraine/master

    lstein committed Oct 28, 2014
    Makes pre-loading of datasources under fastcgi a configurable option
  2. Merge pull request #45 from nathanweeks/issue/regionsearch-features-s…

    lstein committed Oct 28, 2014
    …ame-location
    
    Search results return only one feature with the same type, start, and end
  3. Merge pull request #46 from nathanweeks/issue/karyotype-feature-highl…

    lstein committed Oct 28, 2014
    …ighting
    
    Improve feature visibility in karyotype display
Commits on Oct 23, 2014
Commits on Oct 21, 2014
  1. Merge pull request #42 from nathanweeks/issue/primerdesigner_without_…

    scottcain committed Oct 21, 2014
    …mod_perl
    
    Quell intermittent PrimerDesigner errors when run under mod_fcgid instead of mod_perl.  Makes sense to me!
  2. Merge pull request #38 from nathanweeks/issue/search_whitespace

    scottcain committed Oct 21, 2014
    Trim leading & trailing spaces from the search term.  Thanks Nathan!
Commits on Oct 1, 2014
  1. Restore the behavior whereby small features are displayed in the

    nathanweeks committed Oct 1, 2014
    karyotype display using the diamond glyph, greatly improving their visibility,
    and larger features are displayed using the generic glyph. This functionality
    appears to have been inadvertently disabled by commit
    68e13af.
    
    In the karyotype display, highlight features in a dark blue color to increase
    contrast.
Commits on Sep 26, 2014
  1. Fix issue where Bio::Graphics::Browser2::RegionSearch::search_features

    nathanweeks committed Sep 26, 2014
    "uniqueifies" results where the type and start & end locations are the same,
    despite a comment stating that name & type should be uniqueifying criteria,
    by adding display_name to the mix.
Commits on Aug 18, 2014
Commits on Aug 7, 2014
Commits on Jul 31, 2014
Commits on Jul 30, 2014
  1. add missing load helper file

    lstein committed Jul 30, 2014
  2. remove foobar file

    lstein committed Jul 30, 2014