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Commits on Dec 20, 2004
  1. This commit was manufactured by cvs2svn to create tag

    'Release_1_62_rc3'.
    Nobody committed Dec 20, 2004
  2. updating INSTALL doc for release

    Scott Cain committed Dec 20, 2004
  3. @lstein
Commits on Dec 18, 2004
  1. oops. Put the use in the wrong place. Sorry Scott

    Mark Wilkinson committed Dec 18, 2004
Commits on Dec 16, 2004
  1. updating renderers for various ontology nodes

    Mark Wilkinson committed Dec 16, 2004
  2. updating renderers for various ontology nodes

    Mark Wilkinson committed Dec 16, 2004
  3. missed a few old library calls

    Mark Wilkinson committed Dec 16, 2004
  4. sync with known functional code from mobycentral website

    Mark Wilkinson committed Dec 16, 2004
  5. printing use lib in the wrong spot

    Mark Wilkinson committed Dec 16, 2004
  6. updated to be compatible with the new XML parser library used by all …

    …MOBY modules
    Mark Wilkinson committed Dec 16, 2004
Commits on Dec 14, 2004
  1. adding code to create links to cmap from a chado feature (courtesy Be…

    …n Faga)
    Scott Cain committed Dec 14, 2004
Commits on Dec 11, 2004
  1. typo in the gif renderer

    Mark Wilkinson committed Dec 11, 2004
Commits on Dec 3, 2004
  1. fixing an off by one error

    Scott Cain committed Dec 3, 2004
  2. this really fixes the double glyph problem with apollo data (and any …

    …data
    
    that has more than on entry in feature_dbxref).
    Scott Cain committed Dec 3, 2004
  3. I think this fixes the double glyph problem with apollo data, but I'l…

    …l have to try it out on another box to be sure.
    Scott Cain committed Dec 3, 2004
Commits on Dec 2, 2004
  1. There! Are you happy now? :-)

    (end ==> stop, well, at least, mostly, and only in this file, not in Chado.pm or Feature.pm)
    Scott Cain committed Dec 2, 2004
  2. fixed relative coordinate bug

    Scott Cain committed Dec 2, 2004
  3. adding notes about MySQL 4.1

    Scott Cain committed Dec 2, 2004
Commits on Nov 23, 2004
  1. changes to the chado adaptor to support scores and to Browser.pm

    that cause the chado adpator to get all features of a long chromosome
    (which may break previous fixes for very long alignments).
    Scott Cain committed Nov 23, 2004
Commits on Nov 17, 2004
  1. @lstein
Commits on Oct 21, 2004
  1. Updated non-privileged installation docs

    Sheldon McKay committed Oct 21, 2004
Commits on Oct 18, 2004
  1. @lstein
Commits on Oct 7, 2004
  1. doc updating

    Scott Cain committed Oct 7, 2004
Commits on Oct 4, 2004
  1. @tharris

    small patch for changes that broke SVG output; users can now use SVG …

    …instead of GD::SVG for the image class
    tharris committed Oct 4, 2004
Commits on Oct 3, 2004
  1. fixed reference class problem with SOFA vs SO

    Scott Cain committed Oct 3, 2004
Commits on Oct 1, 2004
  1. Added an option to embed DNA in the GFF file

    Sheldon McKay committed Oct 1, 2004
Commits on Sep 30, 2004
  1. @lstein

    flip fixes

    lstein committed Sep 30, 2004
Commits on Sep 14, 2004
  1. updating docs wrt bioperl version

    Scott Cain committed Sep 14, 2004
Commits on Sep 12, 2004
  1. @lstein

    gbrowse_img now has full support for multiple hits on the genome and …

    …proper linking to gbrowse
    lstein committed Sep 12, 2004
Commits on Sep 11, 2004
  1. @lstein
Commits on Sep 9, 2004
  1. adding DEBUG constant

    Scott Cain committed Sep 9, 2004
  2. I didn't go back far enough with the last commit. These chado modules…

    … actually work.
    Scott Cain committed Sep 9, 2004
  3. moving working chado adaptor back to the main branch

    Scott Cain committed Sep 9, 2004
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