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Commits on Jul 30, 2014
  1. add missing load helper file

    lstein committed Jul 30, 2014
  2. remove foobar file

    lstein committed Jul 30, 2014
Commits on Jul 29, 2014
Commits on Jul 24, 2014
  1. Allow user to select dna/rna query & specify minimum percent identity.

    nathanweeks committed Jul 24, 2014
    Remove unused check_seq() subroutine.
Commits on Jun 11, 2014
Commits on May 16, 2014
  1. BLAT hits are not necessarily reported in best-to-worst order. Read all

    nathanweeks committed May 16, 2014
    blat hits and sort by calculated score (percent query coverage).
    
    Add 1 to start coordinates, as Start coordinates in BLAT PSL output are
    0-based, not 1-based.
    
    Strand needs to be +1/-1 (rather than "+" or "-") in order for
    Bio::SeqFeature::Lite (base class of Bio::Graphics::Feature) to
    correctly interpret them (though there is a pull request to fix this:
        bioperl/bioperl-live#71
Commits on May 2, 2014
  1. Fixed syntax error

    mckays630 committed May 2, 2014
Commits on Apr 29, 2014
Commits on Apr 25, 2014
  1. Quell the following intermittent errors that were occasionally displa…

    nathanweeks committed Apr 25, 2014
    …yed in
    
    the browser:
        Undefined subroutine CGI::Pretty::delete_all
        at /opt/gbrowse/conf/plugins/PrimerDesigner.pm line 106
    The comment above the END code block indicates that this code was for
    mod_perl. The errors were observed under FastCGI.
Commits on Feb 26, 2014
Commits on Dec 11, 2013
  1. Merge pull request #37 from srobb1/master

    scottcain committed Dec 11, 2013
    added region_label to pass region name on in url--thanks Sofia!
Commits on Dec 10, 2013
Commits on Nov 27, 2013
  1. Merge pull request #29 from edelgadoh/master

    scottcain committed Nov 27, 2013
    Ilustrate better gbrowse_syn help with an image
Commits on Aug 29, 2013
Commits on Aug 23, 2013
  1. Modifications to allow pre-loading of datasources to be configurable

    keiranmraine committed Aug 23, 2013
    via GBrowse.conf.
    
    Issue is that pre-loading of the large numbers of datasources can result in endless
    start up of fastcgi processes until no memory remains on server.
Commits on Aug 9, 2013
  1. updated deprecated method

    Sheldon McKay
    Sheldon McKay committed Aug 9, 2013
Commits on Jul 24, 2013
Commits on Jul 22, 2013
  1. Merge branch 'master' of https://github.com/GMOD/GBrowse

    Sheldon McKay
    Sheldon McKay committed Jul 22, 2013
  2. Adding some flexibility for parsing alignment meta-data

    Sheldon McKay
    Sheldon McKay committed Jul 22, 2013
  3. Fix for rubber-band selection

    Ubuntu
    Ubuntu committed Jul 22, 2013
  4. re-adding toggle.js

    Ubuntu
    Ubuntu committed Jul 22, 2013
  5. Fixed rubber-band selection in gbrowse_syn

    Ubuntu
    Ubuntu committed Jul 22, 2013
  6. MIssing toggle.js was breaking gbrowse_syn and a few plugins (need to…

    Ubuntu
    Ubuntu committed Jul 22, 2013
    … re-fit)
Commits on Jul 21, 2013
  1. Rolling back variable tmpdir interpolation

    Sheldon McKay
    Sheldon McKay committed Jul 21, 2013
  2. Adding/fixing variables to interpolate

    Sheldon McKay
    Sheldon McKay committed Jul 21, 2013