Permalink
Switch branches/tags
Commits on Nov 17, 2005
  1. This commit was manufactured by cvs2svn to create branch

    'reference-gbrowse-template'.
    Nobody committed Nov 17, 2005
Commits on Oct 22, 2005
  1. removed an unnecessary $self= shift; statement from bump()

    Gudmundur A. Thorisson committed Oct 22, 2005
Commits on Oct 6, 2005
Commits on Oct 3, 2005
  1. Made changes to use the POSIX for translation.

    Ben Faga committed Oct 3, 2005
  2. Removed some debugging printout statements

    Gudmundur A. Thorisson committed Oct 3, 2005
Commits on Sep 29, 2005
  1. Added sessions to the main gbrowse code (rather than cookies).

    Also, broke the Options.pm's feature() method into multiple methods because it was trying to do to much.
    Fixed track selection.
    Ben Faga committed Sep 29, 2005
Commits on Sep 13, 2005
  1. Applying changes that were made in the bugfix branch.

    This set of changes is paralleling the 1.119.4.1 version of gbrowse.PLS.
    Not quite done, there is no mechanism yet for reading the cookie and I'm not really sure that the cookie naming and expiration are done correctly.
    Ben Faga committed Sep 13, 2005
Commits on Jun 1, 2005
  1. language update from Franck

    Scott Cain committed Jun 1, 2005
Commits on May 29, 2005
  1. Added missing OVERVIEW_TRACKS

    Logghe Marc committed May 29, 2005
Commits on May 19, 2005
  1. moving over from the bugfix branch

    Scott Cain committed May 19, 2005
Commits on May 14, 2005
  1. updating the chado adaptor in head

    Scott Cain committed May 14, 2005
Commits on May 10, 2005
  1. -Now uses GFF3 (see POD documentation and sample GFF-data for details).

    -Numerous changes to minimize GD.pm color and tile overflow problems. Still
     needs rewrite to use Bio::Graphics::Glyph built-in methods to draw stuff
    -Replaced NCBI-2-GFF conversion script with UCSC-2-GFF3 script. NCBI
    annotations proved hard to work with due to to ever-changing download dir
    layout, hence the switch
    Gudmundur A. Thorisson committed May 10, 2005
Commits on Apr 26, 2005
  1. changes for XML::LibXML compat

    Mark Wilkinson committed Apr 26, 2005
Commits on Apr 13, 2005
  1. grammer error

    Scott Cain committed Apr 13, 2005
  2. adding a note about checking out from the bug fix branch until this i…

    …s working.
    Scott Cain committed Apr 13, 2005
Commits on Mar 16, 2005
  1. updating to XML LibXML. I think this completes the repairs to the ina…

    …dvertently backed out updates from a few weeks ago. I think these will work :-)
    Mark Wilkinson committed Mar 16, 2005
Commits on Mar 11, 2005
  1. syncing docs

    Scott Cain committed Mar 11, 2005
Commits on Mar 7, 2005
  1. fixed the genbank config file and added a warning to use perl 5.8 for…

    … DAS-only operation
    lstein committed Mar 7, 2005
Commits on Mar 4, 2005
Commits on Mar 2, 2005
Commits on Mar 1, 2005
Commits on Feb 11, 2005
Commits on Feb 2, 2005
  1. div alignment tweaks

    Allen Day committed Feb 2, 2005
Commits on Feb 1, 2005
  1. mods for more flexible installation. specifically prefixing entire in…

    …stall
    
    tree and stripping out prefix path from generated PLS->pl scripts.
    
    appears to work for all use cases given by Makefile.PL --help, although i'm
    sure i'll hear about it if something is broken!
    Allen Day committed Feb 1, 2005
Commits on Jan 28, 2005
  1. more prefixing

    Allen Day committed Jan 28, 2005
  2. add javascript

    Allen Day committed Jan 28, 2005
  3. man options

    Allen Day committed Jan 28, 2005
  4. add templates

    Allen Day committed Jan 28, 2005
  5. remove this for now

    Allen Day committed Jan 28, 2005
  6. added Options moduley

    Allen Day committed Jan 28, 2005
  7. backend -> Backend

    Allen Day committed Jan 28, 2005
  8. added new modules to manfest

    Allen Day committed Jan 28, 2005
Commits on Jan 27, 2005
  1. standardize perl bin location

    Allen Day committed Jan 27, 2005
  2. more oddities for rpmbuild

    Allen Day committed Jan 27, 2005