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branch: reference-gbro…
Commits on Nov 17, 2005
  1. This commit was manufactured by cvs2svn to create branch

    Nobody authored
    'reference-gbrowse-template'.
Commits on Oct 22, 2005
  1. removed an unnecessary $self= shift; statement from bump()

    Gudmundur A. Thorisson authored
Commits on Oct 6, 2005
  1. @lstein
Commits on Oct 3, 2005
  1. Made changes to use the POSIX for translation.

    Ben Faga authored
  2. Removed some debugging printout statements

    Gudmundur A. Thorisson authored
Commits on Sep 29, 2005
  1. Added sessions to the main gbrowse code (rather than cookies).

    Ben Faga authored
    Also, broke the Options.pm's feature() method into multiple methods because it was trying to do to much.
    Fixed track selection.
Commits on Sep 13, 2005
  1. Applying changes that were made in the bugfix branch.

    Ben Faga authored
    This set of changes is paralleling the 1.119.4.1 version of gbrowse.PLS.
    Not quite done, there is no mechanism yet for reading the cookie and I'm not really sure that the cookie naming and expiration are done correctly.
Commits on Jun 1, 2005
  1. language update from Franck

    Scott Cain authored
Commits on May 29, 2005
  1. Added missing OVERVIEW_TRACKS

    Logghe Marc authored
Commits on May 19, 2005
  1. moving over from the bugfix branch

    Scott Cain authored
Commits on May 14, 2005
  1. updating the chado adaptor in head

    Scott Cain authored
Commits on May 10, 2005
  1. -Now uses GFF3 (see POD documentation and sample GFF-data for details).

    Gudmundur A. Thorisson authored
    -Numerous changes to minimize GD.pm color and tile overflow problems. Still
     needs rewrite to use Bio::Graphics::Glyph built-in methods to draw stuff
    -Replaced NCBI-2-GFF conversion script with UCSC-2-GFF3 script. NCBI
    annotations proved hard to work with due to to ever-changing download dir
    layout, hence the switch
Commits on Apr 26, 2005
  1. changes for XML::LibXML compat

    Mark Wilkinson authored
Commits on Apr 13, 2005
  1. grammer error

    Scott Cain authored
  2. adding a note about checking out from the bug fix branch until this i…

    Scott Cain authored
    …s working.
Commits on Mar 16, 2005
  1. updating to XML LibXML. I think this completes the repairs to the ina…

    Mark Wilkinson authored
    …dvertently backed out updates from a few weeks ago. I think these will work :-)
Commits on Mar 11, 2005
  1. syncing docs

    Scott Cain authored
Commits on Mar 7, 2005
  1. @lstein
Commits on Mar 4, 2005
  1. @lstein
Commits on Mar 2, 2005
  1. @lstein
Commits on Mar 1, 2005
  1. @lstein
Commits on Feb 11, 2005
  1. @lstein
Commits on Feb 2, 2005
  1. div alignment tweaks

    Allen Day authored
Commits on Feb 1, 2005
  1. mods for more flexible installation. specifically prefixing entire in…

    Allen Day authored
    …stall
    
    tree and stripping out prefix path from generated PLS->pl scripts.
    
    appears to work for all use cases given by Makefile.PL --help, although i'm
    sure i'll hear about it if something is broken!
Commits on Jan 28, 2005
  1. more prefixing

    Allen Day authored
  2. add javascript

    Allen Day authored
  3. man options

    Allen Day authored
  4. add templates

    Allen Day authored
  5. remove this for now

    Allen Day authored
  6. added Options moduley

    Allen Day authored
  7. backend -> Backend

    Allen Day authored
  8. added new modules to manfest

    Allen Day authored
Commits on Jan 27, 2005
  1. standardize perl bin location

    Allen Day authored
  2. more oddities for rpmbuild

    Allen Day authored
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