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Commits on Jul 15, 2002
  1. This commit was manufactured by cvs2svn to create branch

    'berkeley-gadfly'.
    Nobody committed Jul 15, 2002
  2. @lstein

    bumped version number

    lstein committed Jul 15, 2002
  3. @lstein

    added sequence plugin to manifest

    lstein committed Jul 15, 2002
Commits on Jul 10, 2002
  1. @lstein
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    fixed _subseq() to operate properly with Bio::DB::GFF objects; unfort…

    …unately the workaround for split locations is becoming problematic
    lstein committed Jul 10, 2002
Commits on Jul 7, 2002
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  2. @lstein

    This is version 1.45.

    lstein committed Jul 7, 2002
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    ported the fasta dumper to use the Markup module; however there is st…

    …ill a problem with background color mixing -- colors tend to black rather than to white
    lstein committed Jul 7, 2002
Commits on Jul 5, 2002
  1. @lstein

    Made Jason's SequenceDumper check that each format converter

    successfully loads before adding that format to the list.
    
    Added examples of CDS and translation glyphs to wormbase and yeast
    example conf files.
    lstein committed Jul 5, 2002
  2. @lstein

    Renamed Gudmundur's ncbi_to_gff.pl to process_ncbi_human.pl for

    consistency with the other process_* scripts.
    
    Added appropriate entries in install, manifest and makefile.
    lstein committed Jul 5, 2002
Commits on Jul 4, 2002
  1. @lstein

    a few changes to sequence dumper -- still needs to check for io modul…

    …es and modify popup choices accordingly
    lstein committed Jul 4, 2002
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    Added support for the "coding" aggregator.

    Added support for using sub {} as the values of options (this only
    works for local features!!!!)
    lstein committed Jul 4, 2002
Commits on Jun 30, 2002
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Commits on Jun 28, 2002
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Commits on Jun 26, 2002
  1. @lstein
  2. @lstein

    fixed a soul-eating bug that caused restriction annotator to try to g…

    …enerate restriction map of entire chromosomes at once
    lstein committed Jun 26, 2002
  3. @lstein

    fixed various aesthetic problems; got bump control working properly o…

    …n plugins; fixed Go! vs Configure problems in plugins
    lstein committed Jun 26, 2002
  4. @lstein

    Added "global feature" tag to DNA

    lstein committed Jun 26, 2002
  5. @lstein

    Folded in changes to limit number of features shown.

    This is going to need BioPerl 1.02!!!!
    lstein committed Jun 26, 2002
Commits on Jun 19, 2002
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Commits on Jun 12, 2002
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    Fixed a problem that was causing display to stop halfway through

    whenever the restrictionannotator was loaded.
    lstein committed Jun 12, 2002
Commits on Jun 11, 2002
  1. @lstein
Commits on Jun 6, 2002
  1. handle overlapping coloring regions and bold and italics -- fix minor…

    … bug when feature started before the beginning of the region
    Jason Stajich committed Jun 6, 2002
Commits on Jun 3, 2002
  1. @lstein
Commits on Jun 2, 2002
  1. change defaults to include 100 and 200 bp zooms and change DNA featur…

    …e from sequence -> dna glyph
    Jason Stajich committed Jun 2, 2002
Commits on May 24, 2002
  1. @lstein
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    Moved wormbase_transcript into the glyph list (and out of bioperl).

    Modified it so that it hopefully will show nice gray UTRs.
    lstein committed May 24, 2002
Commits on May 23, 2002
  1. @lstein
  2. @lstein

    added divide-by-zero check

    lstein committed May 23, 2002
Commits on May 21, 2002
  1. @lstein

    cleared bad uploaded files

    lstein committed May 21, 2002
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