Skip to content

HTTPS clone URL

Subversion checkout URL

You can clone with HTTPS or Subversion.

Download ZIP
tag: release-1_32
Commits on Jul 15, 2002
  1. This commit was manufactured by cvs2svn to create branch

    Nobody authored
    'berkeley-gadfly'.
  2. @lstein

    bumped version number

    lstein authored
  3. @lstein
Commits on Jul 10, 2002
  1. @lstein
  2. @lstein

    fixed _subseq() to operate properly with Bio::DB::GFF objects; unfort…

    lstein authored
    …unately the workaround for split locations is becoming problematic
Commits on Jul 7, 2002
  1. @lstein
  2. @lstein

    This is version 1.45.

    lstein authored
  3. @lstein
  4. @lstein

    ported the fasta dumper to use the Markup module; however there is st…

    lstein authored
    …ill a problem with background color mixing -- colors tend to black rather than to white
Commits on Jul 5, 2002
  1. @lstein

    Made Jason's SequenceDumper check that each format converter

    lstein authored
    successfully loads before adding that format to the list.
    
    Added examples of CDS and translation glyphs to wormbase and yeast
    example conf files.
  2. @lstein

    Renamed Gudmundur's ncbi_to_gff.pl to process_ncbi_human.pl for

    lstein authored
    consistency with the other process_* scripts.
    
    Added appropriate entries in install, manifest and makefile.
Commits on Jul 4, 2002
  1. @lstein

    a few changes to sequence dumper -- still needs to check for io modul…

    lstein authored
    …es and modify popup choices accordingly
  2. @lstein
  3. @lstein

    Added support for the "coding" aggregator.

    lstein authored
    Added support for using sub {} as the values of options (this only
    works for local features!!!!)
Commits on Jun 30, 2002
  1. @lstein
Commits on Jun 28, 2002
  1. @lstein
Commits on Jun 26, 2002
  1. @lstein
  2. @lstein

    fixed a soul-eating bug that caused restriction annotator to try to g…

    lstein authored
    …enerate restriction map of entire chromosomes at once
  3. @lstein

    fixed various aesthetic problems; got bump control working properly o…

    lstein authored
    …n plugins; fixed Go! vs Configure problems in plugins
  4. @lstein
  5. @lstein

    Folded in changes to limit number of features shown.

    lstein authored
    This is going to need BioPerl 1.02!!!!
Commits on Jun 19, 2002
  1. @lstein
Commits on Jun 12, 2002
  1. @lstein

    Fixed a problem that was causing display to stop halfway through

    lstein authored
    whenever the restrictionannotator was loaded.
Commits on Jun 11, 2002
  1. @lstein
Commits on Jun 6, 2002
  1. handle overlapping coloring regions and bold and italics -- fix minor…

    Jason Stajich authored
    … bug when feature started before the beginning of the region
Commits on Jun 3, 2002
  1. @lstein
Commits on Jun 2, 2002
  1. change defaults to include 100 and 200 bp zooms and change DNA featur…

    Jason Stajich authored
    …e from sequence -> dna glyph
Commits on May 24, 2002
  1. @lstein
  2. @lstein
  3. @lstein

    Moved wormbase_transcript into the glyph list (and out of bioperl).

    lstein authored
    Modified it so that it hopefully will show nice gray UTRs.
Commits on May 23, 2002
  1. @lstein
  2. @lstein

    added divide-by-zero check

    lstein authored
Commits on May 21, 2002
  1. @lstein

    cleared bad uploaded files

    lstein authored
Something went wrong with that request. Please try again.