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Commits on Jul 15, 2002
  1. This commit was manufactured by cvs2svn to create branch

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    'berkeley-gadfly'.
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    bumped version number

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    added sequence plugin to manifest

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Commits on Jul 10, 2002
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    fixed _subseq() to operate properly with Bio::DB::GFF objects; unfort…

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    …unately the workaround for split locations is becoming problematic
Commits on Jul 7, 2002
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    This is version 1.45.

    lstein committed
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    ported the fasta dumper to use the Markup module; however there is st…

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    …ill a problem with background color mixing -- colors tend to black rather than to white
Commits on Jul 5, 2002
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    Made Jason's SequenceDumper check that each format converter

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    successfully loads before adding that format to the list.
    
    Added examples of CDS and translation glyphs to wormbase and yeast
    example conf files.
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    Renamed Gudmundur's ncbi_to_gff.pl to process_ncbi_human.pl for

    lstein committed
    consistency with the other process_* scripts.
    
    Added appropriate entries in install, manifest and makefile.
Commits on Jul 4, 2002
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    a few changes to sequence dumper -- still needs to check for io modul…

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    …es and modify popup choices accordingly
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    Added support for the "coding" aggregator.

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    Added support for using sub {} as the values of options (this only
    works for local features!!!!)
Commits on Jun 30, 2002
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Commits on Jun 28, 2002
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Commits on Jun 26, 2002
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    fixed a soul-eating bug that caused restriction annotator to try to g…

    lstein committed
    …enerate restriction map of entire chromosomes at once
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    fixed various aesthetic problems; got bump control working properly o…

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    …n plugins; fixed Go! vs Configure problems in plugins
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    Added "global feature" tag to DNA

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    Folded in changes to limit number of features shown.

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    This is going to need BioPerl 1.02!!!!
Commits on Jun 19, 2002
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Commits on Jun 12, 2002
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    Fixed a problem that was causing display to stop halfway through

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    whenever the restrictionannotator was loaded.
Commits on Jun 11, 2002
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Commits on Jun 6, 2002
  1. handle overlapping coloring regions and bold and italics -- fix minor…

    Jason Stajich committed
    … bug when feature started before the beginning of the region
Commits on Jun 3, 2002
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Commits on Jun 2, 2002
  1. change defaults to include 100 and 200 bp zooms and change DNA featur…

    Jason Stajich committed
    …e from sequence -> dna glyph
Commits on May 24, 2002
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    Moved wormbase_transcript into the glyph list (and out of bioperl).

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    Modified it so that it hopefully will show nice gray UTRs.
Commits on May 23, 2002
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    added divide-by-zero check

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Commits on May 21, 2002
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    cleared bad uploaded files

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