the image without the image map or navigation buttons.
* Added the wormbase_gene aggregator. Useful for the c. elegans gff file. * If you pick up the latest bioperl-live (or apply extras/bioperl-1.0.patch) there are fixes in Bio::Graphics that prevent genes from disappearing when zoomed all the way into an intron.
* Previous version would crash on vanilla Bioperl 1.0 installations. This problem has been fixed, but at the cost of disabling wildcard searches. To get wildcard searches, upgrade to Bioperl 1.01 using CVS or the patch file in extras/bioperl-1.0.patch. * Fixed aesthetic problems with a phantom "plugin:Restriction Sites" entry appearing on the key even when restriction sites are turned off. * Fixed intermittent "Couldn't open database" errors. * Fixed intermittent scrambling of user settings.
(actually requires some changes that won't appear until the next bufix release). Version 1.38 of GBrowse works around these problems at the cost of sacrificing a minor feature (ability to use wildcards in search strings).
…e cookie handling -- settings get losttail -f /usr/local/wormbase/logs/error_logtail -f /usr/local/wormbase/logs/error_log
…s, oligo finding and much more
… by third-party code -- unfortunately it is still underdocumented, but look at the Bio::Graphics::Browser->render_html() call
…nstalled in correct place