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tag: release-1_47

Jan 30, 2003

  1. This commit was manufactured by cvs2svn to create tag 'release-1_47'.

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  2. This commit was manufactured by cvs2svn to create branch 'branch-1_47'.

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  3. looks to be largely working; fixed minor problems with the feature de…

    …finition.
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  4. cleaned up some documentation

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  5. wild card searching should work now (though multiple words not)

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Jan 27, 2003

  1. documentation additions

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  2. get_feature_by_name appears to work

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  3. get_feature_by_name nearly working

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Jan 26, 2003

  1. method sub_SeqFeatures seems to be working.

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  2. several updates

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Jan 24, 2003

  1. added code for sub_SeqFeature

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Jan 23, 2003

  1. Feature.pm is not quite working yet, but the framework is all there.

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Jan 22, 2003

  1. initial add of Chado::Segment::Feature--doesn't work yet.

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  2. adding the genome dumper to gbrowse dist. this should be reworked as a

    PLS file, and should have some extra configuration directives for it added
    to gbrowse.conf.
    
    -allen
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Jan 19, 2003

  1. Lincoln Stein

    killed off-by-one bug in dumps detected by Marc Logghe

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Jan 17, 2003

  1. changed to make installed files readonly on Windows

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  2. made install platform independent (again)

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Jan 16, 2003

  1. fixed problems with installing on Windows when the installed files ar…

    …e readonly.
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Jan 14, 2003

  1. implementing search features--not working yet

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Jan 13, 2003

  1. still implementing keyword search

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  2. expanding search capabilities.

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Jan 10, 2003

  1. several updates; still an miscommunication between gbrowse and Chado:…

    …:Segment
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Jan 08, 2003

  1. a few grammatical changes

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  2. removed scratch files for bulk_load_gff, left a working version of th…

    …e script
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  3. added directions for anonymous cvs checkout on windows.

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  4. made 'make clean' platform independent.

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  5. Lincoln Stein

    stupid mistake in gadfly url

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  6. Lincoln Stein

    removed the .pl files from the bin directory -- these are generated d…

    …uring make from the corresponding .PLS files
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  7. Lincoln Stein

    fixed process_gadfly script to accomodate release3 data; however this…

    … data is only genes so alignments are missing
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Jan 07, 2003

  1. added AUTHOR and ABSTRACT for PPD creation

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Jan 06, 2003

  1. made install scripts really platform independent; they now depend on

    Bio::Root::IO for path stuff.
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  2. Lincoln Stein

    version of process_gadfly to handle release 3 format data

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  3. made install script really platform indep--now relies on Bio::Root::I…

    …O for
    
    file path stuff.
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  4. support darwin case

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Jan 03, 2003

  1. fixed comment about using --create option on Windows.

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