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tag: release-1_54
Commits on Sep 8, 2003
  1. converting GENBANK_HOWTO to pod

    Scott Cain authored
  2. @lstein
  3. add date and make it a richseq

    Jason Stajich authored
  4. off-by-one error

    Jason Stajich authored
  5. SequenceDumper now reports the correct locations for features in GenB…

    Jason Stajich authored
    …ank/EMBL/BSML output relative to the sequence chunk. Currently it creates fuzzy locations, this may be changed to use Remote locations
Commits on Sep 7, 2003
  1. @lstein
Commits on Sep 5, 2003
  1. only dump out features which are selected - also only add features to…

    Jason Stajich authored
    … Seq object when they are selected
  2. @lstein

    Fixed crash that occured when an unknown amino acid code (like "X") a…

    lstein authored
    …ppears in the sequence string
Commits on Sep 4, 2003
  1. insure that we don't try and load SeqIO::gff

    Jason Stajich authored
Commits on Sep 3, 2003
  1. don't try and load GFF format as Bio::SeqIO::gff

    Jason Stajich authored
Commits on Aug 28, 2003
  1. a little more detail about using gbrowse with chado

    Scott Cain authored
  2. Getting ready for 1.54 release

    Scott Cain authored
  3. updating version number

    Scott Cain authored
Commits on Aug 27, 2003
  1. cleaning up output a little

    Mark Wilkinson authored
  2. added a few things to take advantage of Lincolns new gff dumper, that…

    Mark Wilkinson authored
    … dumps plugin features as well
  3. sometimes the substring goes out of range and causes failure. This is…

    Mark Wilkinson authored
    … probably caused by some upstream error, but it can be caught here by a simple test
  4. fixed a broken link

    Scott Cain authored
  5. minor path fix in demo code

    Scott Cain authored
  6. @lstein

    fixed tutorial and accompanying files to be consistent with actual be…

    lstein authored
    …havior of bioperl. Patch old versions of bioperl for use with genbank dumper. Patch GFFDumper.pm to show interface to new Bio::Graphics::FeatureFile
Commits on Aug 26, 2003
  1. someone fixed the code somewhere else, making my fix from last week i…

    Mark Wilkinson authored
    …nto a bug rather than a fix.
Commits on Aug 25, 2003
  1. @lstein
  2. @lstein
  3. @lstein
  4. @lstein
  5. fixing for windows wierdness

    Scott Cain authored
Commits on Aug 22, 2003
  1. fixed version number

    Scott Cain authored
  2. updating manifest

    Scott Cain authored
  3. updating manifest

    Scott Cain authored
  4. syncing pg bulk loader to bioperl

    Scott Cain authored
  5. more doc updates

    Scott Cain authored
  6. more doc clean up

    Scott Cain authored
  7. updated docs and manifest

    Scott Cain authored
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