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Commits on Sep 8, 2003
  1. converting GENBANK_HOWTO to pod

    Scott Cain committed Sep 8, 2003
  2. add date and make it a richseq

    Jason Stajich committed Sep 8, 2003
  3. off-by-one error

    Jason Stajich committed Sep 8, 2003
  4. SequenceDumper now reports the correct locations for features in GenB…

    …ank/EMBL/BSML output relative to the sequence chunk. Currently it creates fuzzy locations, this may be changed to use Remote locations
    Jason Stajich committed Sep 8, 2003
Commits on Sep 7, 2003
Commits on Sep 5, 2003
  1. only dump out features which are selected - also only add features to…

    … Seq object when they are selected
    Jason Stajich committed Sep 5, 2003
  2. Fixed crash that occured when an unknown amino acid code (like "X") a…

    …ppears in the sequence string
    lstein committed Sep 5, 2003
Commits on Sep 4, 2003
  1. insure that we don't try and load SeqIO::gff

    Jason Stajich committed Sep 4, 2003
Commits on Sep 3, 2003
  1. don't try and load GFF format as Bio::SeqIO::gff

    Jason Stajich committed Sep 3, 2003
Commits on Aug 28, 2003
  1. a little more detail about using gbrowse with chado

    Scott Cain committed Aug 28, 2003
  2. Getting ready for 1.54 release

    Scott Cain committed Aug 28, 2003
  3. updating version number

    Scott Cain committed Aug 28, 2003
Commits on Aug 27, 2003
  1. cleaning up output a little

    Mark Wilkinson committed Aug 27, 2003
  2. added a few things to take advantage of Lincolns new gff dumper, that…

    … dumps plugin features as well
    Mark Wilkinson committed Aug 27, 2003
  3. sometimes the substring goes out of range and causes failure. This is…

    … probably caused by some upstream error, but it can be caught here by a simple test
    Mark Wilkinson committed Aug 27, 2003
  4. fixed a broken link

    Scott Cain committed Aug 27, 2003
  5. minor path fix in demo code

    Scott Cain committed Aug 27, 2003
  6. fixed tutorial and accompanying files to be consistent with actual be…

    …havior of bioperl. Patch old versions of bioperl for use with genbank dumper. Patch GFFDumper.pm to show interface to new Bio::Graphics::FeatureFile
    lstein committed Aug 27, 2003
Commits on Aug 26, 2003
  1. someone fixed the code somewhere else, making my fix from last week i…

    …nto a bug rather than a fix.
    Mark Wilkinson committed Aug 26, 2003
Commits on Aug 25, 2003
  1. fixing for windows wierdness

    Scott Cain committed Aug 25, 2003
Commits on Aug 22, 2003
  1. fixed version number

    Scott Cain committed Aug 22, 2003
  2. updating manifest

    Scott Cain committed Aug 22, 2003
  3. updating manifest

    Scott Cain committed Aug 22, 2003
  4. syncing pg bulk loader to bioperl

    Scott Cain committed Aug 22, 2003
  5. more doc updates

    Scott Cain committed Aug 22, 2003
  6. more doc clean up

    Scott Cain committed Aug 22, 2003
  7. updated docs and manifest

    Scott Cain committed Aug 22, 2003