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Commits on Jul 20, 2005
  1. This commit was manufactured by cvs2svn to create tag

    'release-1_63rc1'.
    Nobody committed Jul 20, 2005
  2. updated documentation and fixed gbrowse_img so that it shares plugin …

    …configuration with gbrowse
    lstein committed Jul 20, 2005
Commits on Jul 19, 2005
  1. fixed a bug which prevented link and title callbacks from being evalu…

    …ated within the feature files returned by Annotator plugins
    lstein committed Jul 19, 2005
Commits on Jul 18, 2005
  1. fixed box_subparts callback so that links can be assigned to the inte…

    …rvening regions, such as introns
    lstein committed Jul 18, 2005
  2. the bioperl fixes in the extras directory is now always installed unl…

    …ess bioperl 1.6 is detected
    lstein committed Jul 18, 2005
Commits on Jul 15, 2005
  1. Fixed problem of annotation plugins not disappearing from track table…

    … when they are removed from the config file
    lstein committed Jul 15, 2005
  2. gbrowse_img now takes a new "highlight" parameter that will highlight…

    … the indicated named feature(s) in yellow.
    lstein committed Jul 15, 2005
  3. minor warning fix

    lstein committed Jul 15, 2005
Commits on Jul 13, 2005
  1. minor update of really old and wrong docs

    Scott Cain committed Jul 13, 2005
Commits on Jul 12, 2005
  1. when callbacks create an error, the location of the error (section,op…

    …tion) is now identified more precisely in the error log
    lstein committed Jul 12, 2005
Commits on Jul 11, 2005
  1. install js dir as well; generalize mkdirs to a loop

    Jason Stajich committed Jul 11, 2005
  2. fixed the do_bump() function so that length-qualified configuration s…

    …ections can now adjust bump during semantic zooming
    lstein committed Jul 11, 2005
  3. fixed aesthetic problem when expanding/collapsing a section; on some …

    …browsers the second time a section was collapsed an unsightly blank line appeared. This is now fixed.
    lstein committed Jul 11, 2005
  4. the so_transcript glyph and aggregator are identical to processed_tra…

    …nscript, but have names that are slightly easier to remember
    lstein committed Jul 11, 2005
  5. fixed problems with multiple hit search no longer working after check…

    …ing in the region display changes; also updated chinese translation
    lstein committed Jul 11, 2005
Commits on Jul 10, 2005
  1. Incorporated a new "region" panel which is intermediate in size betwe…

    …en the overview and the detail panels. Thanks to Barry Healy for coding this.
    lstein committed Jul 10, 2005
Commits on Jul 7, 2005
  1. updating docs for category option

    Scott Cain committed Jul 7, 2005
Commits on Jul 5, 2005
Commits on Jun 27, 2005
Commits on Jun 20, 2005
  1. changing the name of generate_histogram.pl to bp_generate_histogram.p…

    …l to avoid confusion
    Scott Cain committed Jun 20, 2005
Commits on Jun 18, 2005
  1. The feature name search now no longer does a wildcard PREFIX search (…

    …*foo*), which was killing performance. It still does a wildcard SUFFIX search (foo*).
    lstein committed Jun 18, 2005