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Commits on Jul 28, 2005
  1. This commit was manufactured by cvs2svn to create tag

    Nobody committed
    'release-1_63rc3'.
  2. simplfying the get_feature_by_name method to make it faster; some fun…

    Scott Cain committed
    …ctionality is lost, but it behaves as expected in gbrowse
Commits on Jul 24, 2005
  1. @lstein
Commits on Jul 21, 2005
  1. @lstein
  2. fixing a few typos

    Scott Cain committed
  3. removing caution about mysql 4.1

    Scott Cain committed
  4. removing the cautionary note about mysql 4.1 since it was fixed with …

    Scott Cain committed
    …the new dbi.pm
Commits on Jul 20, 2005
  1. @lstein

    gbrowse_details now accepts a general formatting rule syntax that all…

    lstein committed
    …ows the formatting of each tag value to be precisely controlled.
  2. fixing the manifest

    Scott Cain committed
  3. @lstein

    restored hits on overview

    lstein committed
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    manifest and cvs now in synch

    lstein committed
  5. @lstein

    updated documentation and fixed gbrowse_img so that it shares plugin …

    lstein committed
    …configuration with gbrowse
Commits on Jul 19, 2005
  1. @lstein

    fixed a bug which prevented link and title callbacks from being evalu…

    lstein committed
    …ated within the feature files returned by Annotator plugins
  2. @lstein
Commits on Jul 18, 2005
  1. @lstein
  2. @lstein

    fixed box_subparts callback so that links can be assigned to the inte…

    lstein committed
    …rvening regions, such as introns
  3. @lstein

    the bioperl fixes in the extras directory is now always installed unl…

    lstein committed
    …ess bioperl 1.6 is detected
Commits on Jul 15, 2005
  1. @lstein

    Fixed problem of annotation plugins not disappearing from track table…

    lstein committed
    … when they are removed from the config file
  2. @lstein

    gbrowse_img now takes a new "highlight" parameter that will highlight…

    lstein committed
    … the indicated named feature(s) in yellow.
  3. @lstein

    minor warning fix

    lstein committed
Commits on Jul 13, 2005
  1. minor update of really old and wrong docs

    Scott Cain committed
Commits on Jul 12, 2005
  1. @lstein
  2. @lstein

    when callbacks create an error, the location of the error (section,op…

    lstein committed
    …tion) is now identified more precisely in the error log
Commits on Jul 11, 2005
  1. install js dir as well; generalize mkdirs to a loop

    Jason Stajich committed
  2. @lstein
  3. @lstein
  4. @lstein

    fixed the do_bump() function so that length-qualified configuration s…

    lstein committed
    …ections can now adjust bump during semantic zooming
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    fixed aesthetic problem when expanding/collapsing a section; on some …

    lstein committed
    …browsers the second time a section was collapsed an unsightly blank line appeared. This is now fixed.
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  12. @lstein

    the so_transcript glyph and aggregator are identical to processed_tra…

    lstein committed
    …nscript, but have names that are slightly easier to remember
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