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Commits on Aug 3, 2005
  1. This commit was manufactured by cvs2svn to create tag

    'release-1_63rc4'.
    Nobody committed Aug 3, 2005
Commits on Aug 2, 2005
Commits on Jul 29, 2005
Commits on Jul 28, 2005
  1. simplfying the get_feature_by_name method to make it faster; some fun…

    …ctionality is lost, but it behaves as expected in gbrowse
    Scott Cain committed Jul 28, 2005
Commits on Jul 24, 2005
Commits on Jul 21, 2005
  1. fixing a few typos

    Scott Cain committed Jul 21, 2005
  2. removing caution about mysql 4.1

    Scott Cain committed Jul 21, 2005
  3. removing the cautionary note about mysql 4.1 since it was fixed with …

    …the new dbi.pm
    Scott Cain committed Jul 21, 2005
Commits on Jul 20, 2005
  1. gbrowse_details now accepts a general formatting rule syntax that all…

    …ows the formatting of each tag value to be precisely controlled.
    lstein committed Jul 20, 2005
  2. fixing the manifest

    Scott Cain committed Jul 20, 2005
  3. restored hits on overview

    lstein committed Jul 20, 2005
  4. manifest and cvs now in synch

    lstein committed Jul 20, 2005
  5. updated documentation and fixed gbrowse_img so that it shares plugin …

    …configuration with gbrowse
    lstein committed Jul 20, 2005
Commits on Jul 19, 2005
  1. fixed a bug which prevented link and title callbacks from being evalu…

    …ated within the feature files returned by Annotator plugins
    lstein committed Jul 19, 2005
Commits on Jul 18, 2005
  1. fixed box_subparts callback so that links can be assigned to the inte…

    …rvening regions, such as introns
    lstein committed Jul 18, 2005
  2. the bioperl fixes in the extras directory is now always installed unl…

    …ess bioperl 1.6 is detected
    lstein committed Jul 18, 2005
Commits on Jul 15, 2005
  1. Fixed problem of annotation plugins not disappearing from track table…

    … when they are removed from the config file
    lstein committed Jul 15, 2005
  2. gbrowse_img now takes a new "highlight" parameter that will highlight…

    … the indicated named feature(s) in yellow.
    lstein committed Jul 15, 2005
  3. minor warning fix

    lstein committed Jul 15, 2005
Commits on Jul 13, 2005
  1. minor update of really old and wrong docs

    Scott Cain committed Jul 13, 2005
Commits on Jul 12, 2005
  1. when callbacks create an error, the location of the error (section,op…

    …tion) is now identified more precisely in the error log
    lstein committed Jul 12, 2005
Commits on Jul 11, 2005
  1. install js dir as well; generalize mkdirs to a loop

    Jason Stajich committed Jul 11, 2005
  2. fixed the do_bump() function so that length-qualified configuration s…

    …ections can now adjust bump during semantic zooming
    lstein committed Jul 11, 2005
  3. fixed aesthetic problem when expanding/collapsing a section; on some …

    …browsers the second time a section was collapsed an unsightly blank line appeared. This is now fixed.
    lstein committed Jul 11, 2005