…. Now seq returns a Bio::Seq object, but dna and protein still return a string. note that the version that I am committing works but is backwards from the way it should work: the dna method calls the seq method and gets a Bio::Seq, from which it returns a dna string. What should really happen is move the code to get the dna string to the dna method and have the seq method call it to get the dna string to include in the Bio::Seq object. I'll do that soon, but I wanted to get the working code committed.
…es have correct background color
…wn; fixed translation glyph in bioperl
… in and give the option to remove the border.
…e tested more thoroughly thought, just to be sure.