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tag: release-1_65rc1
Commits on Jul 10, 2006
  1. This commit was manufactured by cvs2svn to create tag

    Nobody authored
    'release-1_65rc1'.
  2. fixing manifest

    Scott Cain authored
  3. updating manifest

    Scott Cain authored
  4. syncing to bioperl

    Scott Cain authored
  5. minor puncuation fix

    Scott Cain authored
Commits on Jul 6, 2006
  1. @lstein

    removed lots of debug warnings

    lstein authored
  2. @lstein
  3. @lstein
Commits on Jun 29, 2006
  1. @lstein
Commits on Jun 28, 2006
  1. syncing to bioperl live

    Scott Cain authored
Commits on Jun 26, 2006
  1. @lstein

    insignificant formatting tweak

    lstein authored
Commits on Jun 21, 2006
  1. Added trace.pm info into the package docs.

    Ben Faga authored
  2. Fixed a couple lines of the documentaion.

    Ben Faga authored
  3. @lstein

    removed redundant line

    lstein authored
Commits on Jun 19, 2006
  1. @lstein
  2. @lstein
Commits on Jun 17, 2006
  1. @lstein

    added the GFF3 readme

    lstein authored
Commits on Jun 16, 2006
Commits on Jun 15, 2006
  1. @lstein
  2. Argh! Changing interfaces: seq used to be the same as dna and protein…

    Scott Cain authored
    …. Now
    
    seq returns a Bio::Seq object, but dna and protein still return a string.
    
    note that the version that I am committing works but is backwards from the way
    it should work: the dna method calls the seq method and gets a Bio::Seq, from
    which it returns a dna string.  What should really happen is move the code
    to get the dna string to the dna method and have the seq method call it
    to get the dna string to include in the Bio::Seq object.  I'll do that soon,
    but I wanted to get the working code committed.
  3. @lstein

    track category sections so that cells that do not contain checheckbox…

    lstein authored
    …es have correct background color
  4. fixing uninterpolated path in conf file

    Scott Cain authored
  5. @lstein
Commits on Jun 14, 2006
  1. @lstein

    added new option to CDS glyph to allow undef phase features to be dra…

    lstein authored
    …wn; fixed translation glyph in bioperl
  2. fixing (I hope) phase calculations

    Scott Cain authored
Commits on Jun 13, 2006
  1. @lstein
  2. Made some changes to trace.pm to remove the generic glyph when zoomed…

    Ben Faga authored
    … in and give the option to remove the border.
  3. syncing extras directory to bioperl live

    Scott Cain authored
  4. adding code to calculate phases on the fly if needed--this needs to b…

    Scott Cain authored
    …e tested
    
    more thoroughly thought, just to be sure.
Commits on Jun 8, 2006
  1. @lstein
Commits on Jun 7, 2006
  1. syncing INSTALL and INSTALL.pod

    Scott Cain authored
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