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Commits on Jul 17, 2006
  1. This commit was manufactured by cvs2svn to create tag

    'release-1_65rc2'.
    Nobody committed Jul 17, 2006
  2. syncing bioperl and updating the manifest

    Scott Cain committed Jul 17, 2006
Commits on Jul 13, 2006
  1. fixed documentation for ucsc2gff

    lstein committed Jul 13, 2006
Commits on Jul 11, 2006
  1. adding some changes

    Scott Cain committed Jul 11, 2006
  2. adding a note about Windows and Perl 5.6.1

    Scott Cain committed Jul 11, 2006
  3. I don't know why this was in the repository to begin with--must have …

    …been an accident
    Scott Cain committed Jul 11, 2006
Commits on Jul 10, 2006
  1. fixing manifest

    Scott Cain committed Jul 10, 2006
  2. updating manifest

    Scott Cain committed Jul 10, 2006
  3. syncing to bioperl

    Scott Cain committed Jul 10, 2006
  4. minor puncuation fix

    Scott Cain committed Jul 10, 2006
Commits on Jul 6, 2006
  1. removed lots of debug warnings

    lstein committed Jul 6, 2006
Commits on Jun 29, 2006
Commits on Jun 28, 2006
  1. syncing to bioperl live

    Scott Cain committed Jun 28, 2006
  2. fixing chado adapter so that it will work 'seemlessly' with the new g…

    …ene glyph
    Scott Cain committed Jun 28, 2006
Commits on Jun 26, 2006
  1. insignificant formatting tweak

    lstein committed Jun 26, 2006
Commits on Jun 21, 2006
  1. Added trace.pm info into the package docs.

    Ben Faga committed Jun 21, 2006
  2. Fixed a couple lines of the documentaion.

    Ben Faga committed Jun 21, 2006
  3. removed redundant line

    lstein committed Jun 21, 2006
Commits on Jun 19, 2006
Commits on Jun 17, 2006
  1. added the GFF3 readme

    lstein committed Jun 17, 2006
Commits on Jun 16, 2006
Commits on Jun 15, 2006
  1. Argh! Changing interfaces: seq used to be the same as dna and protein…

    …. Now
    
    seq returns a Bio::Seq object, but dna and protein still return a string.
    
    note that the version that I am committing works but is backwards from the way
    it should work: the dna method calls the seq method and gets a Bio::Seq, from
    which it returns a dna string.  What should really happen is move the code
    to get the dna string to the dna method and have the seq method call it
    to get the dna string to include in the Bio::Seq object.  I'll do that soon,
    but I wanted to get the working code committed.
    Scott Cain committed Jun 15, 2006
  2. making sure there is a display id for the Bio::Seq object that gets c…

    …reated
    Scott Cain committed Jun 15, 2006
  3. track category sections so that cells that do not contain checheckbox…

    …es have correct background color
    lstein committed Jun 15, 2006
  4. fixing uninterpolated path in conf file

    Scott Cain committed Jun 15, 2006
Commits on Jun 14, 2006
  1. added new option to CDS glyph to allow undef phase features to be dra…

    …wn; fixed translation glyph in bioperl
    lstein committed Jun 14, 2006