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Commits on Dec 16, 2010
  1. removing windows_install.pl from the manifest: it hasn't been used in…

    Scott Cain
    Scott Cain committed Dec 16, 2010
    … years, and causes tests to fail with Archive::Zip isn't installed.
Commits on Nov 19, 2010
Commits on Nov 18, 2010
  1. version 2.17

    lstein committed Nov 18, 2010
  2. fixed region coordinates

    lstein committed Nov 18, 2010
Commits on Nov 16, 2010
  1. fixed problem with gbrowse_details not being able to find BAM reads d…

    lstein committed Nov 16, 2010
    …ue to odd-naming of reads
Commits on Nov 12, 2010
Commits on Nov 9, 2010
Commits on Nov 8, 2010
  1. track configuration fixes

    lstein committed Nov 8, 2010
Commits on Nov 3, 2010
  1. Track configuration dialog now allows for control of autoscaling beha…

    lstein committed Nov 3, 2010
    …vior in quantitative glyphs; Support for vista_plot glyph added to config dialog.
Commits on Nov 1, 2010
  1. Fixed regression in which database option wasn't propagating from bas…

    lstein committed Nov 1, 2010
    …e track to semantic zoom tracks.
Commits on Oct 25, 2010
  1. Modified plugin base class to make it possible to get at the underlyi…

    lstein committed Oct 25, 2010
    …ng renderer object by calling renderer() method.
Commits on Oct 22, 2010
  1. uploaded files won't use the summary mode unless the number of lines …

    lstein committed Oct 22, 2010
    …loaded exceeds 10,000
Commits on Oct 21, 2010
  1. doc clean up

    Scott Cain
    Scott Cain committed Oct 21, 2010
Commits on Oct 18, 2010
  1. Enabled a capability to override plugin-generated link and citation o…

    Peter Ruzanov
    Peter Ruzanov committed Oct 18, 2010
    …ptions using stanza instructions
Commits on Oct 7, 2010
Commits on Oct 1, 2010
  1. Fixed problem with subtrack selection tables producing empty tracks u…

    lstein committed Oct 1, 2010
    …nder some conditions.
  2. Fixed problem with subtrack selection tables producing empty tracks u…

    lstein committed Oct 1, 2010
    …nder some conditions.
  3. Patched gbrowse-slave shell script to work with Macs

    Nathan Liles
    Nathan Liles committed Oct 1, 2010
Commits on Sep 29, 2010
  1. Re-reversed the yeast_renderfarm url change and fixed the link proble…

    Nathan Liles
    Nathan Liles committed Sep 29, 2010
    …m in GBrowse.conf instead
  2. Fixed url link for yeast renderfarm

    Nathan Liles
    Nathan Liles committed Sep 29, 2010
Commits on Sep 28, 2010
  1. fixed cm issue

    lstein committed Sep 28, 2010
Commits on Sep 21, 2010
  1. added google federated login

    lstein committed Sep 21, 2010
Commits on Sep 20, 2010
  1. Disable track filters when in summary mode, since the summary feature…

    lstein committed Sep 20, 2010
    …s generated when this mode is active rarely have the structure and attributes expected by the writer of the filter. The downside of this is that if you use track filters to distinguish one set of features from another, this will not be reflected in the summary density plots, which will show all features of the matching type regardless of the filter.
Commits on Sep 16, 2010
  1. Added code that allows callbacks to invoke Bio::Graphics::Browser2::R…

    lstein committed Sep 16, 2010
    …ender->request() in order to get a hash that contains various information about the current state.
Commits on Sep 14, 2010
  1. Added code to recognize and strip whitespace from search coordinates.…

    lstein committed Sep 14, 2010
    … This allows "chr1:2,000 .. 1,180,000" to work as a search term.
  2. moved Capture::Tiny from "requires" to "build_requires" since it is o…

    Scott Cain
    Scott Cain committed Sep 14, 2010
    …nly needed for testing.
Commits on Sep 13, 2010
  1. this is release 2.15

    lstein committed Sep 13, 2010
  2. Fixed incorrect sequence dumping in the sequence dumper when using th…

    lstein committed Sep 13, 2010
    …e Bio::DB::GFF database backend.
Commits on Sep 10, 2010
  1. Fix to re-enable selection of subtracks by name using url. Was broken…

    Peter Ruzanov
    Peter Ruzanov committed Sep 10, 2010
    … by new things introduced with SubtrackTable module
Commits on Sep 8, 2010
  1. Renderfarm slaves now honor the init_code directive. You will need Bi…

    lstein committed Sep 8, 2010
    …o::Graphics version 2.13 in order to take advantage of this feature.
Commits on Sep 3, 2010