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Commits on Mar 16, 2004
  1. quieting a uninitialized warning for chado database (no good analog f…

    …or 'source').
    Scott Cain committed Mar 16, 2004
  2. Doc fixes

    Sheldon McKay committed Mar 16, 2004
Commits on Mar 15, 2004
  1. @tharris
  2. @lstein
  3. fixed typo

    Scott Cain committed Mar 15, 2004
Commits on Mar 12, 2004
  1. slightly more permissive definition of contained features for segment…

    … caching
    Sheldon McKay committed Mar 12, 2004
  2. Reorganized/improved diplay of primer design results; added low-quali…

    …ty primer warning
    Sheldon McKay committed Mar 12, 2004
  3. Fixed a few bugs and warnings, added options to control default edito…

    …r and file format
    Sheldon McKay committed Mar 12, 2004
Commits on Mar 11, 2004
  1. comment out DESTROY method

    Scott Cain committed Mar 11, 2004
Commits on Mar 10, 2004
  1. @lstein
Commits on Mar 8, 2004
  1. this commit fixes a cvs hiccup that cause it not to work even with ol…

    …d versions
    
    of gbrowse--unfortunately, this still doesn't work with the current release candidate.
    Scott Cain committed Mar 8, 2004
Commits on Mar 3, 2004
Commits on Mar 2, 2004
  1. Amputated mangled GFF2.5 appendage.

    Sheldon McKay committed Mar 2, 2004
Commits on Mar 1, 2004
  1. fixing up typos

    Scott Cain committed Mar 1, 2004
  2. documenting the installation of MOBY Services for Gbrowse in the CONF…

    …IGURE_HOWTO document
    Mark Wilkinson committed Mar 1, 2004
  3. @lstein
Commits on Feb 29, 2004
  1. clarifications in the documentation of how to install and run gbrowse…

    …_moby independent of a full installation of Gbrowse
    Mark Wilkinson committed Feb 29, 2004
Commits on Feb 27, 2004
  1. typo fix

    Scott Cain committed Feb 27, 2004
  2. fixed typo

    Scott Cain committed Feb 27, 2004
  3. Added re-set capability to sequence attribute getter/setters to facil…

    …itate coordinate re-mapping.
    Sheldon McKay committed Feb 27, 2004
  4. -Completely rewrote ExportFeatures.pm to

    1) be bilingual in EMBL and GAME-XML
    2) enable dumping of partial sequences with relative coordinates
    3) facilitate absolute coordinate re-mapping on the return trip
    4) use a SO-compliant transcript aggregator
    5) offer selectable export of non-gene features
    
    -Brought ImportFeatures.pm in synch with ExportFeatures.pm
    
    Tested GAME-XML upload by slurping the entire example.xml file from the
    Apollo distribution. Works but...
    Please note that these modules are not meant to be bulk data loaders/exporters,
    rather they are recommended for smaller sub-segments rather than entire chromosomes.
    
    Sorry about the long 'diff' to follow...
    Sheldon McKay committed Feb 27, 2004
  5. @lstein
  6. @lstein

    killed a big in the source assignment of bioperl-details that could c…

    …ause the details to be taken from the *wrong* database (ouch!)
    lstein committed Feb 27, 2004
Commits on Feb 26, 2004
  1. fixing more typos

    Scott Cain committed Feb 26, 2004
  2. fixed some typos

    Scott Cain committed Feb 26, 2004
  3. @tharris

    should now correctly display a warning if GD::SVG is not installed (b…

    …ut only upon trying to actually *generate* the SVG
    tharris committed Feb 26, 2004
  4. Lincoln, note the items removed from the manifest--do you want any of…

    … these
    
    to be part of the distribution?
    Scott Cain committed Feb 26, 2004
  5. @lstein
  6. @lstein

    fixed up manifest; not checked

    lstein committed Feb 26, 2004
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