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Tag: release_1_60
Commits on Mar 17, 2004
  1. @tharris
Commits on Mar 16, 2004
  1. incrementing the version number

    Scott Cain authored
  2. @lstein
  3. quieting a uninitialized warning for chado database (no good analog f…

    Scott Cain authored
    …or 'source').
  4. Doc fixes

    Sheldon McKay authored
Commits on Mar 15, 2004
  1. @tharris
  2. @lstein
  3. fixed typo

    Scott Cain authored
Commits on Mar 12, 2004
  1. slightly more permissive definition of contained features for segment…

    Sheldon McKay authored
    … caching
  2. Reorganized/improved diplay of primer design results; added low-quali…

    Sheldon McKay authored
    …ty primer warning
  3. Fixed a few bugs and warnings, added options to control default edito…

    Sheldon McKay authored
    …r and file format
Commits on Mar 11, 2004
  1. comment out DESTROY method

    Scott Cain authored
Commits on Mar 10, 2004
  1. @lstein
Commits on Mar 8, 2004
  1. this commit fixes a cvs hiccup that cause it not to work even with ol…

    Scott Cain authored
    …d versions
    
    of gbrowse--unfortunately, this still doesn't work with the current release candidate.
Commits on Mar 3, 2004
Commits on Mar 2, 2004
  1. Amputated mangled GFF2.5 appendage.

    Sheldon McKay authored
Commits on Mar 1, 2004
  1. fixing up typos

    Scott Cain authored
  2. documenting the installation of MOBY Services for Gbrowse in the CONF…

    Mark Wilkinson authored
    …IGURE_HOWTO document
  3. @lstein
Commits on Feb 29, 2004
  1. clarifications in the documentation of how to install and run gbrowse…

    Mark Wilkinson authored
    …_moby independent of a full installation of Gbrowse
Commits on Feb 27, 2004
  1. typo fix

    Scott Cain authored
  2. fixed typo

    Scott Cain authored
  3. Added re-set capability to sequence attribute getter/setters to facil…

    Sheldon McKay authored
    …itate coordinate re-mapping.
  4. -Completely rewrote ExportFeatures.pm to

    Sheldon McKay authored
    1) be bilingual in EMBL and GAME-XML
    2) enable dumping of partial sequences with relative coordinates
    3) facilitate absolute coordinate re-mapping on the return trip
    4) use a SO-compliant transcript aggregator
    5) offer selectable export of non-gene features
    
    -Brought ImportFeatures.pm in synch with ExportFeatures.pm
    
    Tested GAME-XML upload by slurping the entire example.xml file from the
    Apollo distribution. Works but...
    Please note that these modules are not meant to be bulk data loaders/exporters,
    rather they are recommended for smaller sub-segments rather than entire chromosomes.
    
    Sorry about the long 'diff' to follow...
  5. @lstein
  6. @lstein

    killed a big in the source assignment of bioperl-details that could c…

    lstein authored
    …ause the details to be taken from the *wrong* database (ouch!)
Commits on Feb 26, 2004
  1. fixing more typos

    Scott Cain authored
  2. fixed some typos

    Scott Cain authored
  3. @tharris

    should now correctly display a warning if GD::SVG is not installed (b…

    tharris authored
    …ut only upon trying to actually *generate* the SVG
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