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  • 5 commits
  • 3 files changed
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  • 2 contributors
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6 Changes
@@ -1,8 +1,10 @@
2.40
- * Added support script for Amazon cloud image: gbrowse_attach_slaves.pl creates
- slave instances for AMI ami-c6ca31af.
+ * Add ability to save and restore named snapshots of current state.
* Changed behavior of render slave to a prefork model. Activate by including
PREFORK=5 (or other desired number of servers) in /etc/default/gbrowse-slave.
+ * Added support script for Amazon cloud image: gbrowse_attach_slaves.pl creates
+ slave instances for AMI ami-c6ca31af.
+ * Change default tmpfile location to /var/tmp/gbrowse2 (was /tmp/gbrowse2).
2.39
* Download SVG images as type application/svg+xml rather than triggering
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8 contrib/conf_files/07.chado.conf
@@ -28,7 +28,13 @@ automatic classes = gene
db_adaptor = Bio::DB::Das::Chado
db_args = -dsn dbi:Pg:dbname=chado;host=localhost;port=5432
-user nobody
-
+ -pass blah
+ -srcfeatureslice 1
+ -inferCDS 1
+ -organism "Saccharomyces cerevisiae"
+# another option includes -fulltext 1 but requires running a helper
+# script to prep the database first: gmod_chado_fts_prep.pl
+# See 'perldoc Bio::DB::Das::Chado' for more information.
### TRACK CONFIGURATION ####
# the remainder of the sections configure individual tracks
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1  install_util/GBrowseGuessDirectories.pm
@@ -41,6 +41,7 @@ sub tmp {
my $self = shift;
return File::Spec->catfile($PREFIX,'tmp','gbrowse2') if $PREFIX;
return '/srv/gbrowse2/tmp' if $ENV{DEB_BUILD_ARCH}; # FHS system
+ return '/var/tmp/gbrowse2' if -e '/var/tmp' && -w '/var/tmp';
return File::Spec->catfile(File::Spec->tmpdir,'gbrowse2');
}

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