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CAlign.pm
CAlign.xs
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README
realign.h

README

Bio/Graphics/Browser/CAlign version 1.00
========================================

This module implements a simple global Smith-Waterman nucleotide
alignment and is used by the MultipleAlignment plugin to adjust for
gapped alignments.

It is not intended to be used directly, but as a helper application to
Bio::Graphics::Browser::Realign.

INSTALLATION

To install this module type the following:

   perl Makefile.PL
   make
   make install

COPYRIGHT AND LICENCE

Lincoln Stein <lstein@cshl.orgE>.

Copyright (c) 2003 Cold Spring Harbor Laboratory

This library is free software; you can redistribute it and/or modify
it under the same terms as Perl itself.  See DISCLAIMER.txt for
disclaimers of warranty.

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