From 286aa907ebb381de622d0bf0fe94edd7663fad92 Mon Sep 17 00:00:00 2001
From: Colin Diesh <colin.diesh@gmail.com>
Date: Tue, 4 Jun 2024 12:43:45 -0400
Subject: [PATCH] Fix bug parsing GFF3 data on chromosomes where data is empty
 (#4417)

---
 plugins/gff3/src/Gff3Adapter/Gff3Adapter.ts | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/plugins/gff3/src/Gff3Adapter/Gff3Adapter.ts b/plugins/gff3/src/Gff3Adapter/Gff3Adapter.ts
index 78dad7872d..c0634f0bd2 100644
--- a/plugins/gff3/src/Gff3Adapter/Gff3Adapter.ts
+++ b/plugins/gff3/src/Gff3Adapter/Gff3Adapter.ts
@@ -25,7 +25,7 @@ export default class Gff3Adapter extends BaseFeatureDataAdapter {
     header: string
     intervalTreeMap: Record<
       string,
-      (sc?: (arg: string) => void) => IntervalTree
+      ((sc?: (arg: string) => void) => IntervalTree) | undefined
     >
   }>
 
@@ -132,7 +132,7 @@ export default class Gff3Adapter extends BaseFeatureDataAdapter {
       try {
         const { start, end, refName } = query
         const { intervalTreeMap } = await this.loadData(opts)
-        intervalTreeMap[refName](opts.statusCallback)
+        intervalTreeMap[refName]?.(opts.statusCallback)
           ?.search([start, end])
           .forEach(f => observer.next(f))
         observer.complete()