From 84736cc1c21092d735c7806b55d4214296806b36 Mon Sep 17 00:00:00 2001
From: Colin Diesh <colin.diesh@gmail.com>
Date: Fri, 21 Jun 2024 14:51:40 -0400
Subject: [PATCH] Bump generic-filehandle to put URL in error messages (#4464)

---
 plugins/legacy-jbrowse/package.json |  2 +-
 yarn.lock                           | 35 +++++++++++++++--------------
 2 files changed, 19 insertions(+), 18 deletions(-)

diff --git a/plugins/legacy-jbrowse/package.json b/plugins/legacy-jbrowse/package.json
index 94ef92e133..1882161101 100644
--- a/plugins/legacy-jbrowse/package.json
+++ b/plugins/legacy-jbrowse/package.json
@@ -36,7 +36,7 @@
     "clean": "rimraf dist esm *.tsbuildinfo"
   },
   "dependencies": {
-    "@gmod/nclist": "^0.2.1",
+    "@gmod/nclist": "^1.0.2",
     "buffer-crc32": "^1.0.0",
     "generic-filehandle": "^3.0.0",
     "get-value": "^3.0.1",
diff --git a/yarn.lock b/yarn.lock
index eaf1b3ad0c..c6196956c5 100644
--- a/yarn.lock
+++ b/yarn.lock
@@ -2267,11 +2267,12 @@
     "@gmod/bgzf-filehandle" "^1.4.0"
     generic-filehandle "^3.0.0"
 
-"@gmod/nclist@^0.2.1":
-  version "0.2.2"
-  resolved "https://registry.yarnpkg.com/@gmod/nclist/-/nclist-0.2.2.tgz#c550efae85f61b4c42abfe92f07ae74db27e66ba"
-  integrity sha512-LzIYvOSul9rl4y9eGIZx2ltTpTsXVWlEbW/rkauKSLjge6Pnv9XgkT43fCalYMi9Bzniwm5eF59JPi2eM5pcMg==
+"@gmod/nclist@^1.0.2":
+  version "1.0.2"
+  resolved "https://registry.yarnpkg.com/@gmod/nclist/-/nclist-1.0.2.tgz#d1bfdf15d7f50995a677934a9a69a962634cb5af"
+  integrity sha512-fyqrGHpzvbXdUc7oxU8Ho0lkcFDtIe7BO/kjyJtvkLnbkua+dWe4XWsllpvv/UYygdztlyZS1Oz6AQdx1qzZcQ==
   dependencies:
+    "@jridgewell/resolve-uri" "^3.1.2"
     abortable-promise-cache "^1.0.1"
     quick-lru "^4.0.0"
 
@@ -2624,7 +2625,7 @@
     "@jridgewell/sourcemap-codec" "^1.4.10"
     "@jridgewell/trace-mapping" "^0.3.24"
 
-"@jridgewell/resolve-uri@^3.0.3", "@jridgewell/resolve-uri@^3.1.0":
+"@jridgewell/resolve-uri@^3.0.3", "@jridgewell/resolve-uri@^3.1.0", "@jridgewell/resolve-uri@^3.1.2":
   version "3.1.2"
   resolved "https://registry.yarnpkg.com/@jridgewell/resolve-uri/-/resolve-uri-3.1.2.tgz#7a0ee601f60f99a20c7c7c5ff0c80388c1189bd6"
   integrity sha512-bRISgCIjP20/tbWSPWMEi54QVPRZExkuD9lJL+UIxUKtwVJA8wW1Trb1jMs1RFXo1CBTNZ/5hpC9QvmKWdopKw==
@@ -2874,7 +2875,7 @@
     csstype "^3.1.3"
     prop-types "^15.8.1"
 
-"@mui/system@^5.14.4", "@mui/system@^5.15.15", "@mui/system@^5.15.20":
+"@mui/system@^5.14.4", "@mui/system@^5.15.20":
   version "5.15.20"
   resolved "https://registry.yarnpkg.com/@mui/system/-/system-5.15.20.tgz#f1933aabc4c10f8580c7a951ca3b88542ef0f76b"
   integrity sha512-LoMq4IlAAhxzL2VNUDBTQxAb4chnBe8JvRINVNDiMtHE2PiPOoHlhOPutSxEbaL5mkECPVWSv6p8JEV+uykwIA==
@@ -2904,13 +2905,13 @@
     react-is "^18.2.0"
 
 "@mui/x-data-grid@^7.0.0":
-  version "7.7.0"
-  resolved "https://registry.yarnpkg.com/@mui/x-data-grid/-/x-data-grid-7.7.0.tgz#4b417de6f85e888b953d5d4f4bb7abfabed62717"
-  integrity sha512-s3Oii9EKcYPnL7M4g5evNley/J0slLL6xWRi0VwYqTHPGntBAMntUktMZ63bD/xko99f5ZcFoRBYTc55+mJ+AQ==
+  version "7.7.1"
+  resolved "https://registry.yarnpkg.com/@mui/x-data-grid/-/x-data-grid-7.7.1.tgz#c08a12da4d09492107b18b036b3f93a53e89214c"
+  integrity sha512-5XsvuVpJfjV2ERtNiVRWL+0UUq5rh2Tq8aLZdJ8Ca5PnweEfNzOesQMlf0lpjXqnzuoq7uTwvICqoAMjsTTglg==
   dependencies:
     "@babel/runtime" "^7.24.7"
-    "@mui/system" "^5.15.15"
-    "@mui/utils" "^5.15.14"
+    "@mui/system" "^5.15.20"
+    "@mui/utils" "^5.15.20"
     clsx "^2.1.1"
     prop-types "^15.8.1"
     reselect "^4.1.8"
@@ -8590,9 +8591,9 @@ electron-publish@24.13.1:
     mime "^2.5.2"
 
 electron-to-chromium@^1.4.796:
-  version "1.4.807"
-  resolved "https://registry.yarnpkg.com/electron-to-chromium/-/electron-to-chromium-1.4.807.tgz#4d6c5ea1516f0164ac5bfd487ccd4ee9507c8f01"
-  integrity sha512-kSmJl2ZwhNf/bcIuCH/imtNOKlpkLDn2jqT5FJ+/0CXjhnFaOa9cOe9gHKKy71eM49izwuQjZhKk+lWQ1JxB7A==
+  version "1.4.808"
+  resolved "https://registry.yarnpkg.com/electron-to-chromium/-/electron-to-chromium-1.4.808.tgz#85b2f93a5e32c2949a1a4d39375851945c936835"
+  integrity sha512-0ItWyhPYnww2VOuCGF4s1LTfbrdAV2ajy/TN+ZTuhR23AHI6rWHCrBXJ/uxoXOvRRqw8qjYVrG81HFI7x/2wdQ==
 
 electron-updater@^6.1.1:
   version "6.2.1"
@@ -9801,9 +9802,9 @@ gauge@^4.0.3:
     wide-align "^1.1.5"
 
 generic-filehandle@^3.0.0:
-  version "3.1.2"
-  resolved "https://registry.yarnpkg.com/generic-filehandle/-/generic-filehandle-3.1.2.tgz#3b5f4cc927f7833d2d90157e0b12ce235526fa41"
-  integrity sha512-GmN3k7xfuH3Nb545WLl2ybmle4VvXbwspXtYnQZ2MpSIDbuQUoMXb2RObPgbs4wU3ggOojpGTJxYHzh3jvDkfw==
+  version "3.2.0"
+  resolved "https://registry.yarnpkg.com/generic-filehandle/-/generic-filehandle-3.2.0.tgz#f65401ce71bccadb796335495c3d9250185876d4"
+  integrity sha512-tG6ZGpKVQn1N6WLlOFoDZL54wdrBSelY3Mk3R9nTPYas0odoY9LcGvUJmb9jGghFC4hy3WY8EqQUIQk0ni/0jg==
   dependencies:
     es6-promisify "^6.1.1"