From b576685508741d84527c5503f72795d8adefaf73 Mon Sep 17 00:00:00 2001 From: Robert Buels Date: Fri, 2 Nov 2012 19:38:01 -0400 Subject: [PATCH] tweak order of release notes --- release-notes.txt | 30 +++++++++++++++--------------- 1 file changed, 15 insertions(+), 15 deletions(-) diff --git a/release-notes.txt b/release-notes.txt index 52768cff5b..9a33027475 100644 --- a/release-notes.txt +++ b/release-notes.txt @@ -1,5 +1,20 @@ {{$NEXT}} + * Added a new data backend to allow direct access to BAM files over + the web without needing to translate them to JSON with + `bam-to-json.pl`. This new method of BAM access is far superior to + the old `bam-to-json.pl` in nearly every way, except in browser + compatibility. Like the BigWig direct access backend added in + JBrowse 1.5.0, it works in all major browsers *except* Internet + Explorer, because IE lacks support for the necessary web standards. + It may work with Internet Explorer 10, but this has not been tested + yet. + + * Added a new `Alignments` track type designed to work seamlessly + with BAM files. This track type shows basepair differences and + insertions between aligned reads and the reference, and highlights + reads with missing mate-pairs in red. + * Added the ability to export track data in FASTA, GFF3, bed, bedGraph, and Wiggle formats (issue #104). To export data, turn on the track of interest, then click on its track label to bring up @@ -21,21 +36,6 @@ distinguish at a glance between regions with no data, and regions with a value of 0. - * Added a new data backend to allow direct access to BAM files over - the web without needing to translate them to JSON with - `bam-to-json.pl`. This new method of BAM access is far superior to - the old `bam-to-json.pl` in nearly every way, except in browser - compatibility. Like the BigWig direct access backend added in - JBrowse 1.5.0, it works in all major browsers *except* Internet - Explorer, because IE lacks support for the necessary web standards. - It may work with Internet Explorer 10, but this has not been tested - yet. - - * Added a new `Alignments` track type designed to work seamlessly - with BAM files. This track type shows basepair differences and - insertions between aligned reads and the reference, and highlights - reads with missing mate-pairs in red. - * Added a new `FeatureCoverage` track type, which shows a dynamically-computed XY-plot of the depth of coverage of features across a genome. One good use of this track type is to provide a