diff --git a/.gitattributes b/.gitattributes
new file mode 100644
index 0000000000..1a6bd45874
--- /dev/null
+++ b/.gitattributes
@@ -0,0 +1 @@
+package-lock.json binary
diff --git a/.gitignore b/.gitignore
index 2a0daa1a85..40a4d16e50 100644
--- a/.gitignore
+++ b/.gitignore
@@ -20,20 +20,6 @@ samtools-master/
 samtools-0.1.20
 setup.log
 MYMETA.*
-src/FileSaver/
-src/dbind/
-src/dgrid/
-src/dijit/
-src/dojo/
-src/dojox/
-src/jDataView/
-src/json-schema/
-src/jszlib/
-src/lazyload/
-src/put-selector/
-src/util/
-src/xstyle/
-src/dstore/
 node_modules
 .idea/**
 /nbproject/private/
@@ -42,7 +28,6 @@ _Inline
 .DS_Store
 blib
 pm_to_blib
-bower_components
 src/dojo-themes
 themes/*/css
 .sass-cache
@@ -50,3 +35,4 @@ themes/*/css
 *driver.log
 JBrowse-*/
 JBrowse-*.zip
+dist/
diff --git a/.jshintrc b/.jshintrc
index 5cc28f9296..7637a6de72 100644
--- a/.jshintrc
+++ b/.jshintrc
@@ -8,6 +8,7 @@
     "browser": true,
     "dojo": true,
     "evil": true,     // allow eval
+    "esversion": 6,
     "laxbreak": true,
     "laxcomma": true,
     "loopfunc": true,
@@ -17,7 +18,7 @@
     "shadow": true,
     "maxerr": 250,
     "sub": true,
-    "predef": [ "require", "define", "electronRequire" ],
+    "predef": [ "require", "define", "electronRequire", "cjsRequire", "dojoConfig" ],
     "maxcomplexity": 40,
     "indent": 2,
     "undef": true,
diff --git a/.npmignore b/.npmignore
new file mode 100644
index 0000000000..8603dc0f0c
--- /dev/null
+++ b/.npmignore
@@ -0,0 +1,37 @@
+*~
+/data/
+.#*
+\#*\#
+*.index
+*.pyc
+*TODO.txt
+Makefile
+/sample_data/json
+/docs/jsdoc/
+/*-debug.html
+/extlib*
+autom4te.cache
+sample_data/raw/tomato
+sample_data/raw/yeast_chr1+2/yeast.fa
+/.prove
+/setup.log
+/release-notes.html
+samtools-master/
+samtools-0.1.20
+setup.log
+MYMETA.*
+node_modules
+.idea/**
+/nbproject/private/
+*.swp
+_Inline
+.DS_Store
+blib
+pm_to_blib
+src/dojo-themes
+themes/*/css
+.sass-cache
+.vscode/
+*driver.log
+JBrowse-*/
+JBrowse-*.zip
diff --git a/.travis.yml b/.travis.yml
index 11f73d17f9..87a4145b8d 100644
--- a/.travis.yml
+++ b/.travis.yml
@@ -42,25 +42,24 @@ script:
 - if [[ "x$TRAVIS_TAG" != "x" ]]; then build/set_package_versions.pl $TRAVIS_TAG src/JBrowse/package.json package.json; fi
 - RELEASE_VERSION=`node -e 'require("fs").readFile("src/JBrowse/package.json", (e,d)=>console.log(JSON.parse(d).version))'`
 - BUILD_DIR=$PWD
-# if we are building for inclusion into the `dev` branch, run the minification and test against that
+- ./setup.sh
+- prove -Isrc/perl5 -r -j3 tests/perl_tests;
+- utils/jb_run.js -p 9000 & sleep 2
+- node_modules/.bin/phantomjs tests/js_tests/run-jasmine.js http://localhost:9000/tests/js_tests/index.html
+- MOZ_HEADLESS=1 SELENIUM_BROWSER=firefox JBROWSE_URL=http://localhost:9000/index.html tests/selenium_tests/travis_wrapper.sh;
+# if we are building for inclusion into the `dev` branch, build the releases and test the minimal one too
 - |
-  if [[ "x$TRAVIS_TAG" != "x" || $TRAVIS_BRANCH = "master" || $TRAVIS_BRANCH = "dev" || $TRAVIS_PULL_REQUEST != "false" ]]; then
-    make -f build/Makefile release;
+  if [[ "x$TRAVIS_TAG" != "x" || $TRAVIS_BRANCH = "dojo-webpack-plugin" || $TRAVIS_BRANCH = "dev" || $TRAVIS_PULL_REQUEST != "false" ]]; then
+    make -f build/Makefile;
     rm -rf JBrowse-*/;
     unzip -q JBrowse-$RELEASE_VERSION.zip;
-    cp -r tests/ JBrowse-$RELEASE_VERSION/;
     cd JBrowse-$RELEASE_VERSION/;
+    cp -r ../tests/ .;
+    ./setup.sh;
+    prove -Isrc/perl5 -r -j3 tests/perl_tests;
+    cd $BUILD_DIR;
+    MOZ_HEADLESS=1 SELENIUM_BROWSER=firefox NOSEOPTS="-I jasmine" JBROWSE_URL=http://localhost:9000/JBrowse-$RELEASE_VERSION/index.html tests/selenium_tests/travis_wrapper.sh;
   fi
-- ./setup.sh legacy;
-- prove -Isrc/perl5 -r -j3 tests/perl_tests;
-- utils/jb_run.js -p 9000 & sleep 2
-- phantomjs tests/js_tests/run-jasmine.js http://localhost:9000/tests/js_tests/index.html
-- MOZ_HEADLESS=1 SELENIUM_BROWSER=firefox JBROWSE_URL=http://localhost:9000/index.html tests/selenium_tests/travis_wrapper.sh;
-- cd $BUILD_DIR
-after_failure:
-- cat JBrowse-*/setup.log
-- find JBrowse-*/extlib/lib/perl5
-- cat JBrowse-*/src/build-report.txt
 deploy:
 # upload both minified and non-minified builds to GitHub releases
 - provider: releases
diff --git a/bin/cpanm b/bin/cpanm
index 9676fae7e3..7f81ee80ff 100755
--- a/bin/cpanm
+++ b/bin/cpanm
@@ -21,7 +21,7 @@ BEGIN {
 my %fatpacked;
 
 $fatpacked{"App/cpanminus.pm"} = '#line '.(1+__LINE__).' "'.__FILE__."\"\n".<<'APP_CPANMINUS';
-  package App::cpanminus;our$VERSION="1.7039";1;
+  package App::cpanminus;our$VERSION="1.7043";1;
 APP_CPANMINUS
 
 $fatpacked{"App/cpanminus/Dependency.pm"} = '#line '.(1+__LINE__).' "'.__FILE__."\"\n".<<'APP_CPANMINUS_DEPENDENCY';
@@ -29,7 +29,7 @@ $fatpacked{"App/cpanminus/Dependency.pm"} = '#line '.(1+__LINE__).' "'.__FILE__.
 APP_CPANMINUS_DEPENDENCY
 
 $fatpacked{"App/cpanminus/script.pm"} = '#line '.(1+__LINE__).' "'.__FILE__."\"\n".<<'APP_CPANMINUS_SCRIPT';
-  package App::cpanminus::script;use strict;use Config;use Cwd ();use App::cpanminus;use App::cpanminus::Dependency;use File::Basename ();use File::Find ();use File::Path ();use File::Spec ();use File::Copy ();use File::Temp ();use Getopt::Long ();use Symbol ();use String::ShellQuote ();use version ();use constant WIN32=>$^O eq 'MSWin32';use constant BAD_TAR=>($^O eq 'solaris' || $^O eq 'hpux');use constant CAN_SYMLINK=>eval {symlink("","");1};our$VERSION=$App::cpanminus::VERSION;if ($INC{"App/FatPacker/Trace.pm"}){require version::vpp}my$quote=WIN32 ? q/"/ : q/'/;sub agent {my$self=shift;my$agent="cpanminus/$VERSION";$agent .= " perl/$]" if$self->{report_perl_version};$agent}sub determine_home {my$class=shift;my$homedir=$ENV{HOME}|| eval {require File::HomeDir;File::HomeDir->my_home}|| join('',@ENV{qw(HOMEDRIVE HOMEPATH)});if (WIN32){require Win32;$homedir=Win32::GetShortPathName($homedir)}return "$homedir/.cpanm"}sub new {my$class=shift;bless {home=>$class->determine_home,cmd=>'install',seen=>{},notest=>undef,test_only=>undef,installdeps=>undef,force=>undef,sudo=>undef,make=>undef,verbose=>undef,quiet=>undef,interactive=>undef,log=>undef,mirrors=>[],mirror_only=>undef,mirror_index=>undef,cpanmetadb=>"http://cpanmetadb.plackperl.org/v1.0/",perl=>$^X,argv=>[],local_lib=>undef,self_contained=>undef,exclude_vendor=>undef,prompt_timeout=>0,prompt=>undef,configure_timeout=>60,build_timeout=>3600,test_timeout=>1800,try_lwp=>1,try_wget=>1,try_curl=>1,uninstall_shadows=>($] < 5.012),skip_installed=>1,skip_satisfied=>0,auto_cleanup=>7,pod2man=>1,installed_dists=>0,install_types=>['requires'],with_develop=>0,showdeps=>0,scandeps=>0,scandeps_tree=>[],format=>'tree',save_dists=>undef,skip_configure=>0,verify=>0,report_perl_version=>!$class->maybe_ci,build_args=>{},features=>{},pure_perl=>0,cpanfile_path=>'cpanfile',@_,},$class}sub env {my($self,$key)=@_;$ENV{"PERL_CPANM_" .$key}}sub maybe_ci {my$class=shift;grep$ENV{$_},qw(TRAVIS CI AUTOMATED_TESTING AUTHOR_TESTING)}sub install_type_handlers {my$self=shift;my@handlers;for my$type (qw(recommends suggests)){push@handlers,"with-$type"=>sub {my%uniq;$self->{install_types}=[grep!$uniq{$_}++,@{$self->{install_types}},$type ]};push@handlers,"without-$type"=>sub {$self->{install_types}=[grep $_ ne $type,@{$self->{install_types}}]}}@handlers}sub build_args_handlers {my$self=shift;my@handlers;for my$phase (qw(configure build test install)){push@handlers,"$phase-args=s"=>\($self->{build_args}{$phase})}@handlers}sub parse_options {my$self=shift;local@ARGV=@{$self->{argv}};push@ARGV,grep length,split /\s+/,$self->env('OPT');push@ARGV,@_;Getopt::Long::Configure("bundling");Getopt::Long::GetOptions('f|force'=>sub {$self->{skip_installed}=0;$self->{force}=1},'n|notest!'=>\$self->{notest},'test-only'=>sub {$self->{notest}=0;$self->{skip_installed}=0;$self->{test_only}=1},'S|sudo!'=>\$self->{sudo},'v|verbose'=>\$self->{verbose},'verify!'=>\$self->{verify},'q|quiet!'=>\$self->{quiet},'h|help'=>sub {$self->{action}='show_help'},'V|version'=>sub {$self->{action}='show_version'},'perl=s'=>sub {$self->diag("--perl is deprecated since it's known to be fragile in figuring out dependencies. Run `$_[1] -S cpanm` instead.\n",1);$self->{perl}=$_[1]},'l|local-lib=s'=>sub {$self->{local_lib}=$self->maybe_abs($_[1])},'L|local-lib-contained=s'=>sub {$self->{local_lib}=$self->maybe_abs($_[1]);$self->{self_contained}=1;$self->{pod2man}=undef},'self-contained!'=>\$self->{self_contained},'exclude-vendor!'=>\$self->{exclude_vendor},'mirror=s@'=>$self->{mirrors},'mirror-only!'=>\$self->{mirror_only},'mirror-index=s'=>sub {$self->{mirror_index}=$self->maybe_abs($_[1])},'M|from=s'=>sub {$self->{mirrors}=[$_[1]];$self->{mirror_only}=1},'cpanmetadb=s'=>\$self->{cpanmetadb},'cascade-search!'=>\$self->{cascade_search},'prompt!'=>\$self->{prompt},'installdeps'=>\$self->{installdeps},'skip-installed!'=>\$self->{skip_installed},'skip-satisfied!'=>\$self->{skip_satisfied},'reinstall'=>sub {$self->{skip_installed}=0},'interactive!'=>\$self->{interactive},'i|install'=>sub {$self->{cmd}='install'},'info'=>sub {$self->{cmd}='info'},'look'=>sub {$self->{cmd}='look';$self->{skip_installed}=0},'U|uninstall'=>sub {$self->{cmd}='uninstall'},'self-upgrade'=>sub {$self->{action}='self_upgrade'},'uninst-shadows!'=>\$self->{uninstall_shadows},'lwp!'=>\$self->{try_lwp},'wget!'=>\$self->{try_wget},'curl!'=>\$self->{try_curl},'auto-cleanup=s'=>\$self->{auto_cleanup},'man-pages!'=>\$self->{pod2man},'scandeps'=>\$self->{scandeps},'showdeps'=>sub {$self->{showdeps}=1;$self->{skip_installed}=0},'format=s'=>\$self->{format},'save-dists=s'=>sub {$self->{save_dists}=$self->maybe_abs($_[1])},'skip-configure!'=>\$self->{skip_configure},'dev!'=>\$self->{dev_release},'metacpan!'=>\$self->{metacpan},'report-perl-version!'=>\$self->{report_perl_version},'configure-timeout=i'=>\$self->{configure_timeout},'build-timeout=i'=>\$self->{build_timeout},'test-timeout=i'=>\$self->{test_timeout},'with-develop'=>\$self->{with_develop},'without-develop'=>sub {$self->{with_develop}=0},'with-feature=s'=>sub {$self->{features}{$_[1]}=1},'without-feature=s'=>sub {$self->{features}{$_[1]}=0},'with-all-features'=>sub {$self->{features}{__all}=1},'pp|pureperl!'=>\$self->{pure_perl},"cpanfile=s"=>\$self->{cpanfile_path},$self->install_type_handlers,$self->build_args_handlers,);if (!@ARGV && $0 ne '-' &&!-t STDIN){push@ARGV,$self->load_argv_from_fh(\*STDIN);$self->{load_from_stdin}=1}$self->{argv}=\@ARGV}sub check_upgrade {my$self=shift;my$install_base=$ENV{PERL_LOCAL_LIB_ROOT}? $self->local_lib_target($ENV{PERL_LOCAL_LIB_ROOT}): $Config{installsitebin};if ($0 eq '-'){return}elsif ($0 !~ /^$install_base/){if ($0 =~ m!perlbrew/bin!){die <<DIE}else {die <<DIE}}}sub check_libs {my$self=shift;return if$self->{_checked}++;$self->bootstrap_local_lib}sub setup_verify {my$self=shift;my$has_modules=eval {require Module::Signature;require Digest::SHA;1};$self->{cpansign}=$self->which('cpansign');unless ($has_modules && $self->{cpansign}){warn "WARNING: Module::Signature and Digest::SHA is required for distribution verifications.\n";$self->{verify}=0}}sub parse_module_args {my($self,$module)=@_;$module =~ s/^([A-Za-z0-9_:]+)@([v\d\._]+)$/$1~== $2/;if ($module =~ /\~[v\d\._,\!<>= ]+$/){return split /\~/,$module,2}else {return$module,undef}}sub doit {my$self=shift;my$code;eval {$code=($self->_doit==0)};if (my$e=$@){warn$e;$code=1}return$code}sub _doit {my$self=shift;$self->setup_home;$self->init_tools;$self->setup_verify if$self->{verify};if (my$action=$self->{action}){$self->$action()and return 1}return$self->show_help(1)unless @{$self->{argv}}or $self->{load_from_stdin};$self->configure_mirrors;my$cwd=Cwd::cwd;my@fail;for my$module (@{$self->{argv}}){if ($module =~ s/\.pm$//i){my ($volume,$dirs,$file)=File::Spec->splitpath($module);$module=join '::',grep {$_}File::Spec->splitdir($dirs),$file}($module,my$version)=$self->parse_module_args($module);$self->chdir($cwd);if ($self->{cmd}eq 'uninstall'){$self->uninstall_module($module)or push@fail,$module}else {$self->install_module($module,0,$version)or push@fail,$module}}if ($self->{base}&& $self->{auto_cleanup}){$self->cleanup_workdirs}if ($self->{installed_dists}){my$dists=$self->{installed_dists}> 1 ? "distributions" : "distribution";$self->diag("$self->{installed_dists} $dists installed\n",1)}if ($self->{scandeps}){$self->dump_scandeps()}$self->chdir($cwd);return!@fail}sub setup_home {my$self=shift;$self->{home}=$self->env('HOME')if$self->env('HOME');unless (_writable($self->{home})){die "Can't write to cpanm home '$self->{home}': You should fix it with chown/chmod first.\n"}$self->{base}="$self->{home}/work/" .time .".$$";File::Path::mkpath([$self->{base}],0,0777);$self->{log}=File::Spec->catfile($self->{base},"build.log");my$final_log="$self->{home}/build.log";{open my$out,">$self->{log}" or die "$self->{log}: $!"}if (CAN_SYMLINK){my$build_link="$self->{home}/latest-build";unlink$build_link;symlink$self->{base},$build_link;unlink$final_log;symlink$self->{log},$final_log}else {my$log=$self->{log};my$home=$self->{home};$self->{at_exit}=sub {my$self=shift;my$temp_log="$home/build.log." .time .".$$";File::Copy::copy($log,$temp_log)&& unlink($final_log);rename($temp_log,$final_log)}}$self->chat("cpanm (App::cpanminus) $VERSION on perl $] built for $Config{archname}\n" ."Work directory is $self->{base}\n")}sub package_index_for {my ($self,$mirror)=@_;return$self->source_for($mirror)."/02packages.details.txt"}sub generate_mirror_index {my ($self,$mirror)=@_;my$file=$self->package_index_for($mirror);my$gz_file=$file .'.gz';my$index_mtime=(stat$gz_file)[9];unless (-e $file && (stat$file)[9]>= $index_mtime){$self->chat("Uncompressing index file...\n");if (eval {require Compress::Zlib}){my$gz=Compress::Zlib::gzopen($gz_file,"rb")or do {$self->diag_fail("$Compress::Zlib::gzerrno opening compressed index");return};open my$fh,'>',$file or do {$self->diag_fail("$! opening uncompressed index for write");return};my$buffer;while (my$status=$gz->gzread($buffer)){if ($status < 0){$self->diag_fail($gz->gzerror ." reading compressed index");return}print$fh $buffer}}else {if (system("gunzip -c $gz_file > $file")){$self->diag_fail("Cannot uncompress -- please install gunzip or Compress::Zlib");return}}utime$index_mtime,$index_mtime,$file}return 1}sub search_mirror_index {my ($self,$mirror,$module,$version)=@_;$self->search_mirror_index_file($self->package_index_for($mirror),$module,$version)}sub search_mirror_index_file {my($self,$file,$module,$version)=@_;open my$fh,'<',$file or return;my$found;while (<$fh>){if (m!^\Q$module\E\s+([\w\.]+)\s+(\S*)!m){$found=$self->cpan_module($module,$2,$1);last}}return$found unless$self->{cascade_search};if ($found){if ($self->satisfy_version($module,$found->{module_version},$version)){return$found}else {$self->chat("Found $module $found->{module_version} which doesn't satisfy $version.\n")}}return}sub with_version_range {my($self,$version)=@_;defined($version)&& $version =~ /(?:<|!=|==)/}sub encode_json {my($self,$data)=@_;require JSON::PP;my$json=JSON::PP::encode_json($data);$json =~ s/([^a-zA-Z0-9_\-.])/uc sprintf("%%%02x",ord($1))/eg;$json}sub version_to_query {my($self,$module,$version)=@_;require CPAN::Meta::Requirements;my$requirements=CPAN::Meta::Requirements->new;$requirements->add_string_requirement($module,$version || '0');my$req=$requirements->requirements_for_module($module);if ($req =~ s/^==\s*//){return {term=>{'module.version'=>$req },}}elsif ($req !~ /\s/){return {range=>{'module.version_numified'=>{'gte'=>$self->numify_ver_metacpan($req)}},}}else {my%ops=qw(< lt <= lte > gt >= gte);my(%range,@exclusion);my@requirements=split /,\s*/,$req;for my$r (@requirements){if ($r =~ s/^([<>]=?)\s*//){$range{$ops{$1}}=$self->numify_ver_metacpan($r)}elsif ($r =~ s/\!=\s*//){push@exclusion,$self->numify_ver_metacpan($r)}}my@filters=({range=>{'module.version_numified'=>\%range }},);if (@exclusion){push@filters,{not=>{or=>[map {+{term=>{'module.version_numified'=>$self->numify_ver_metacpan($_)}}}@exclusion ]},}}return@filters}}sub numify_ver_metacpan {my($self,$ver)=@_;$ver =~ s/_//g;version->new($ver)->numify}sub numify_ver {my($self,$ver)=@_;eval version->new($ver)->numify}sub maturity_filter {my($self,$module,$version)=@_;if ($version =~ /==/){return}elsif ($self->{dev_release}){return +{not=>{term=>{status=>'backpan' }}}}else {return ({not=>{term=>{status=>'backpan' }}},{term=>{maturity=>'released' }},)}}sub by_version {my%s=qw(latest 3 cpan 2 backpan 1);$b->{_score}<=> $a->{_score}|| $s{$b->{fields}{status}}<=> $s{$a->{fields}{status}}}sub by_first_come {$a->{fields}{date}cmp $b->{fields}{date}}sub by_date {$b->{fields}{date}cmp $a->{fields}{date}}sub find_best_match {my($self,$match,$version)=@_;return unless$match && @{$match->{hits}{hits}|| []};my@hits=$self->{dev_release}? sort {by_version || by_date}@{$match->{hits}{hits}}: sort {by_version || by_first_come}@{$match->{hits}{hits}};$hits[0]->{fields}}sub search_metacpan {my($self,$module,$version)=@_;require JSON::PP;$self->chat("Searching $module ($version) on metacpan ...\n");my$metacpan_uri='http://api.metacpan.org/v0';my@filter=$self->maturity_filter($module,$version);my$query={filtered=>{(@filter ? (filter=>{and=>\@filter }): ()),query=>{nested=>{score_mode=>'max',path=>'module',query=>{custom_score=>{metacpan_script=>"score_version_numified",query=>{constant_score=>{filter=>{and=>[{term=>{'module.authorized'=>JSON::PP::true()}},{term=>{'module.indexed'=>JSON::PP::true()}},{term=>{'module.name'=>$module }},$self->version_to_query($module,$version),]}}},}},}},}};my$module_uri="$metacpan_uri/file/_search?source=";$module_uri .= $self->encode_json({query=>$query,fields=>['date','release','author','module','status' ],});my($release,$author,$module_version);my$module_json=$self->get($module_uri);my$module_meta=eval {JSON::PP::decode_json($module_json)};my$match=$self->find_best_match($module_meta);if ($match){$release=$match->{release};$author=$match->{author};my$module_matched=(grep {$_->{name}eq $module}@{$match->{module}})[0];$module_version=$module_matched->{version}}unless ($release){$self->chat("! Could not find a release matching $module ($version) on MetaCPAN.\n");return}my$dist_uri="$metacpan_uri/release/_search?source=";$dist_uri .= $self->encode_json({filter=>{and=>[{term=>{'release.name'=>$release }},{term=>{'release.author'=>$author }},]},fields=>['download_url','stat','status' ],});my$dist_json=$self->get($dist_uri);my$dist_meta=eval {JSON::PP::decode_json($dist_json)};if ($dist_meta){$dist_meta=$dist_meta->{hits}{hits}[0]{fields}}if ($dist_meta && $dist_meta->{download_url}){(my$distfile=$dist_meta->{download_url})=~ s!.+/authors/id/!!;local$self->{mirrors}=$self->{mirrors};if ($dist_meta->{status}eq 'backpan'){$self->{mirrors}=['http://backpan.perl.org' ]}elsif ($dist_meta->{stat}{mtime}> time()-24*60*60){$self->{mirrors}=['http://cpan.metacpan.org' ]}return$self->cpan_module($module,$distfile,$module_version)}$self->diag_fail("Finding $module on metacpan failed.");return}sub search_database {my($self,$module,$version)=@_;my$found;if ($self->{dev_release}or $self->{metacpan}){$found=$self->search_metacpan($module,$version)and return$found;$found=$self->search_cpanmetadb($module,$version)and return$found}else {$found=$self->search_cpanmetadb($module,$version)and return$found;$found=$self->search_metacpan($module,$version)and return$found}}sub search_cpanmetadb {my($self,$module,$version)=@_;$self->chat("Searching $module ($version) on cpanmetadb ...\n");if ($self->with_version_range($version)){return$self->search_cpanmetadb_history($module,$version)}else {return$self->search_cpanmetadb_package($module,$version)}}sub search_cpanmetadb_package {my($self,$module,$version)=@_;require CPAN::Meta::YAML;(my$uri=$self->{cpanmetadb})=~ s{/?$}{/package/$module};my$yaml=$self->get($uri);my$meta=eval {CPAN::Meta::YAML::Load($yaml)};if ($meta && $meta->{distfile}){return$self->cpan_module($module,$meta->{distfile},$meta->{version})}$self->diag_fail("Finding $module on cpanmetadb failed.");return}sub search_cpanmetadb_history {my($self,$module,$version)=@_;(my$uri=$self->{cpanmetadb})=~ s{/?$}{/history/$module};my$content=$self->get($uri)or return;my@found;for my$line (split /\r?\n/,$content){if ($line =~ /^$module\s+(\S+)\s+(\S+)$/){push@found,{version=>$1,version_obj=>version::->parse($1),distfile=>$2,}}}return unless@found;$found[-1]->{latest}=1;my$match;for my$try (sort {$b->{version_obj}cmp $a->{version_obj}}@found){if ($self->satisfy_version($module,$try->{version_obj},$version)){local$self->{mirrors}=$self->{mirrors};unshift @{$self->{mirrors}},'http://backpan.perl.org' unless$try->{latest};return$self->cpan_module($module,$try->{distfile},$try->{version})}}$self->diag_fail("Finding $module ($version) on cpanmetadb failed.");return}sub search_module {my($self,$module,$version)=@_;if ($self->{mirror_index}){$self->mask_output(chat=>"Searching $module on mirror index $self->{mirror_index} ...\n");my$pkg=$self->search_mirror_index_file($self->{mirror_index},$module,$version);return$pkg if$pkg;unless ($self->{cascade_search}){$self->mask_output(diag_fail=>"Finding $module ($version) on mirror index $self->{mirror_index} failed.");return}}unless ($self->{mirror_only}){my$found=$self->search_database($module,$version);return$found if$found}MIRROR: for my$mirror (@{$self->{mirrors}}){$self->mask_output(chat=>"Searching $module on mirror $mirror ...\n");my$name='02packages.details.txt.gz';my$uri="$mirror/modules/$name";my$gz_file=$self->package_index_for($mirror).'.gz';unless ($self->{pkgs}{$uri}){$self->mask_output(chat=>"Downloading index file $uri ...\n");$self->mirror($uri,$gz_file);$self->generate_mirror_index($mirror)or next MIRROR;$self->{pkgs}{$uri}="!!retrieved!!"}my$pkg=$self->search_mirror_index($mirror,$module,$version);return$pkg if$pkg;$self->mask_output(diag_fail=>"Finding $module ($version) on mirror $mirror failed.")}return}sub source_for {my($self,$mirror)=@_;$mirror =~ s/[^\w\.\-]+/%/g;my$dir="$self->{home}/sources/$mirror";File::Path::mkpath([$dir ],0,0777);return$dir}sub load_argv_from_fh {my($self,$fh)=@_;my@argv;while(defined(my$line=<$fh>)){chomp$line;$line =~ s/#.+$//;$line =~ s/^\s+//;$line =~ s/\s+$//;push@argv,split ' ',$line if$line}return@argv}sub show_version {my$self=shift;print "cpanm (App::cpanminus) version $VERSION ($0)\n";print "perl version $] ($^X)\n\n";print "  \%Config:\n";for my$key (qw(archname installsitelib installsitebin installman1dir installman3dir sitearchexp sitelibexp vendorarch vendorlibexp archlibexp privlibexp)){print "    $key=$Config{$key}\n" if$Config{$key}}print "  \%ENV:\n";for my$key (grep /^PERL/,sort keys%ENV){print "    $key=$ENV{$key}\n"}print "  \@INC:\n";for my$inc (@INC){print "    $inc\n" unless ref($inc)eq 'CODE'}return 1}sub show_help {my$self=shift;if ($_[0]){print <<USAGE;return}print <<HELP;return 1}sub _writable {my$dir=shift;my@dir=File::Spec->splitdir($dir);while (@dir){$dir=File::Spec->catdir(@dir);if (-e $dir){return -w _}pop@dir}return}sub maybe_abs {my($self,$lib)=@_;if ($lib eq '_' or $lib =~ /^~/ or File::Spec->file_name_is_absolute($lib)){return$lib}else {return File::Spec->canonpath(File::Spec->catdir(Cwd::cwd(),$lib))}}sub local_lib_target {my($self,$root)=@_;(grep {$_ ne ''}split /\Q$Config{path_sep}/,$root)[0]}sub bootstrap_local_lib {my$self=shift;if ($self->{local_lib}){return$self->setup_local_lib($self->{local_lib})}if ($ENV{PERL_LOCAL_LIB_ROOT}&& $ENV{PERL_MM_OPT}){return$self->setup_local_lib($self->local_lib_target($ENV{PERL_LOCAL_LIB_ROOT}),1)}return if$self->{sudo}or (_writable($Config{installsitelib})and _writable($Config{installsitebin}));if ($ENV{PERL_MM_OPT}and ($ENV{MODULEBUILDRC}or $ENV{PERL_MB_OPT})){return}$self->setup_local_lib;$self->diag(<<DIAG,1);sleep 2}sub upgrade_toolchain {my($self,$config_deps)=@_;my%deps=map {$_->module=>$_}@$config_deps;my$reqs=CPAN::Meta::Requirements->from_string_hash({'Module::Build'=>'0.38','ExtUtils::MakeMaker'=>'6.58','ExtUtils::Install'=>'1.46',});if ($deps{"ExtUtils::MakeMaker"}){$deps{"ExtUtils::MakeMaker"}->merge_with($reqs)}elsif ($deps{"Module::Build"}){$deps{"Module::Build"}->merge_with($reqs);$deps{"ExtUtils::Install"}||= App::cpanminus::Dependency->new("ExtUtils::Install",0,'configure');$deps{"ExtUtils::Install"}->merge_with($reqs)}@$config_deps=values%deps}sub _core_only_inc {my($self,$base)=@_;require local::lib;(local::lib->resolve_path(local::lib->install_base_arch_path($base)),local::lib->resolve_path(local::lib->install_base_perl_path($base)),(!$self->{exclude_vendor}? grep {$_}@Config{qw(vendorarch vendorlibexp)}: ()),@Config{qw(archlibexp privlibexp)},)}sub _diff {my($self,$old,$new)=@_;my@diff;my%old=map {$_=>1}@$old;for my$n (@$new){push@diff,$n unless exists$old{$n}}@diff}sub _setup_local_lib_env {my($self,$base)=@_;$self->diag(<<WARN,1)if$base =~ /\s/;local$SIG{__WARN__}=sub {};local::lib->setup_env_hash_for($base,0)}sub setup_local_lib {my($self,$base,$no_env)=@_;$base=undef if$base eq '_';require local::lib;{local $0='cpanm';$base ||= "~/perl5";$base=local::lib->resolve_path($base);if ($self->{self_contained}){my@inc=$self->_core_only_inc($base);$self->{search_inc}=[@inc ]}else {$self->{search_inc}=[local::lib->install_base_arch_path($base),local::lib->install_base_perl_path($base),@INC,]}$self->_setup_local_lib_env($base)unless$no_env;$self->{local_lib}=$base}}sub prompt_bool {my($self,$mess,$def)=@_;my$val=$self->prompt($mess,$def);return lc$val eq 'y'}sub prompt {my($self,$mess,$def)=@_;my$isa_tty=-t STDIN && (-t STDOUT ||!(-f STDOUT || -c STDOUT));my$dispdef=defined$def ? "[$def] " : " ";$def=defined$def ? $def : "";if (!$self->{prompt}|| (!$isa_tty && eof STDIN)){return$def}local $|=1;local $\;my$ans;eval {local$SIG{ALRM}=sub {undef$ans;die "alarm\n"};print STDOUT "$mess $dispdef";alarm$self->{prompt_timeout}if$self->{prompt_timeout};$ans=<STDIN>;alarm 0};if (defined$ans){chomp$ans}else {print STDOUT "\n"}return (!defined$ans || $ans eq '')? $def : $ans}sub diag_ok {my($self,$msg)=@_;chomp$msg;$msg ||= "OK";if ($self->{in_progress}){$self->_diag("$msg\n");$self->{in_progress}=0}$self->log("-> $msg\n")}sub diag_fail {my($self,$msg,$always)=@_;chomp$msg;if ($self->{in_progress}){$self->_diag("FAIL\n");$self->{in_progress}=0}if ($msg){$self->_diag("! $msg\n",$always,1);$self->log("-> FAIL $msg\n")}}sub diag_progress {my($self,$msg)=@_;chomp$msg;$self->{in_progress}=1;$self->_diag("$msg ... ");$self->log("$msg\n")}sub _diag {my($self,$msg,$always,$error)=@_;my$fh=$error ? *STDERR : *STDOUT;print {$fh}$msg if$always or $self->{verbose}or!$self->{quiet}}sub diag {my($self,$msg,$always)=@_;$self->_diag($msg,$always);$self->log($msg)}sub chat {my$self=shift;print STDERR @_ if$self->{verbose};$self->log(@_)}sub mask_output {my$self=shift;my$method=shift;$self->$method($self->mask_uri_passwords(@_))}sub log {my$self=shift;open my$out,">>$self->{log}";print$out @_}sub run {my($self,$cmd)=@_;if (WIN32){$cmd=$self->shell_quote(@$cmd)if ref$cmd eq 'ARRAY';unless ($self->{verbose}){$cmd .= " >> " .$self->shell_quote($self->{log})." 2>&1"}!system$cmd}else {my$pid=fork;if ($pid){waitpid$pid,0;return!$?}else {$self->run_exec($cmd)}}}sub run_exec {my($self,$cmd)=@_;if (ref$cmd eq 'ARRAY'){unless ($self->{verbose}){open my$logfh,">>",$self->{log};open STDERR,'>&',$logfh;open STDOUT,'>&',$logfh;close$logfh}exec @$cmd}else {unless ($self->{verbose}){$cmd .= " >> " .$self->shell_quote($self->{log})." 2>&1"}exec$cmd}}sub run_timeout {my($self,$cmd,$timeout)=@_;return$self->run($cmd)if WIN32 || $self->{verbose}||!$timeout;my$pid=fork;if ($pid){eval {local$SIG{ALRM}=sub {die "alarm\n"};alarm$timeout;waitpid$pid,0;alarm 0};if ($@ && $@ eq "alarm\n"){$self->diag_fail("Timed out (> ${timeout}s). Use --verbose to retry.");local$SIG{TERM}='IGNORE';kill TERM=>0;waitpid$pid,0;return}return!$?}elsif ($pid==0){$self->run_exec($cmd)}else {$self->chat("! fork failed: falling back to system()\n");$self->run($cmd)}}sub append_args {my($self,$cmd,$phase)=@_;if (my$args=$self->{build_args}{$phase}){$cmd=join ' ',$self->shell_quote(@$cmd),$args}$cmd}sub configure {my($self,$cmd,$depth)=@_;local$ENV{PERL5_CPAN_IS_RUNNING}=local$ENV{PERL5_CPANPLUS_IS_RUNNING}=$$;local$ENV{PERL5_CPANM_IS_RUNNING}=$$;my$use_default=!$self->{interactive};local$ENV{PERL_MM_USE_DEFAULT}=$use_default;local$ENV{PERL_MM_OPT}=$ENV{PERL_MM_OPT};local$ENV{PERL_MB_OPT}=$ENV{PERL_MB_OPT};unless ($self->{pod2man}){$ENV{PERL_MM_OPT}.= " INSTALLMAN1DIR=none INSTALLMAN3DIR=none";$ENV{PERL_MB_OPT}.= " --config installman1dir= --config installsiteman1dir= --config installman3dir= --config installsiteman3dir="}if ($self->{pure_perl}){$ENV{PERL_MM_OPT}.= " PUREPERL_ONLY=1";$ENV{PERL_MB_OPT}.= " --pureperl-only"}$cmd=$self->append_args($cmd,'configure')if$depth==0;local$self->{verbose}=$self->{verbose}|| $self->{interactive};$self->run_timeout($cmd,$self->{configure_timeout})}sub build {my($self,$cmd,$distname,$depth)=@_;local$ENV{PERL_MM_USE_DEFAULT}=!$self->{interactive};$cmd=$self->append_args($cmd,'build')if$depth==0;return 1 if$self->run_timeout($cmd,$self->{build_timeout});while (1){my$ans=lc$self->prompt("Building $distname failed.\nYou can s)kip, r)etry, e)xamine build log, or l)ook ?","s");return if$ans eq 's';return$self->build($cmd,$distname,$depth)if$ans eq 'r';$self->show_build_log if$ans eq 'e';$self->look if$ans eq 'l'}}sub test {my($self,$cmd,$distname,$depth)=@_;return 1 if$self->{notest};local$ENV{PERL_MM_USE_DEFAULT}=!$self->{interactive};local$ENV{NONINTERACTIVE_TESTING}=!$self->{interactive};$cmd=$self->append_args($cmd,'test')if$depth==0;return 1 if$self->run_timeout($cmd,$self->{test_timeout});if ($self->{force}){$self->diag_fail("Testing $distname failed but installing it anyway.");return 1}else {$self->diag_fail;while (1){my$ans=lc$self->prompt("Testing $distname failed.\nYou can s)kip, r)etry, f)orce install, e)xamine build log, or l)ook ?","s");return if$ans eq 's';return$self->test($cmd,$distname,$depth)if$ans eq 'r';return 1 if$ans eq 'f';$self->show_build_log if$ans eq 'e';$self->look if$ans eq 'l'}}}sub install {my($self,$cmd,$uninst_opts,$depth)=@_;if ($depth==0 && $self->{test_only}){return 1}if ($self->{sudo}){unshift @$cmd,"sudo"}if ($self->{uninstall_shadows}&&!$ENV{PERL_MM_OPT}){push @$cmd,@$uninst_opts}$cmd=$self->append_args($cmd,'install')if$depth==0;$self->run($cmd)}sub look {my$self=shift;my$shell=$ENV{SHELL};$shell ||= $ENV{COMSPEC}if WIN32;if ($shell){my$cwd=Cwd::cwd;$self->diag("Entering $cwd with $shell\n");system$shell}else {$self->diag_fail("You don't seem to have a SHELL :/")}}sub show_build_log {my$self=shift;my@pagers=($ENV{PAGER},(WIN32 ? (): ('less')),'more');my$pager;while (@pagers){$pager=shift@pagers;next unless$pager;$pager=$self->which($pager);next unless$pager;last}if ($pager){system("$pager < $self->{log}")}else {$self->diag_fail("You don't seem to have a PAGER :/")}}sub chdir {my$self=shift;Cwd::chdir(File::Spec->canonpath($_[0]))or die "$_[0]: $!"}sub configure_mirrors {my$self=shift;unless (@{$self->{mirrors}}){$self->{mirrors}=['http://www.cpan.org' ]}for (@{$self->{mirrors}}){s!^/!file:///!;s!/$!!}}sub self_upgrade {my$self=shift;$self->check_upgrade;$self->{argv}=['App::cpanminus' ];return}sub install_module {my($self,$module,$depth,$version)=@_;$self->check_libs;if ($self->{seen}{$module}++){$self->chat("Already tried $module. Skipping.\n");return 1}if ($self->{skip_satisfied}){my($ok,$local)=$self->check_module($module,$version || 0);if ($ok){$self->diag("You have $module ($local)\n",1);return 1}}my$dist=$self->resolve_name($module,$version);unless ($dist){my$what=$module .($version ? " ($version)" : "");$self->diag_fail("Couldn't find module or a distribution $what",1);return}if ($dist->{distvname}&& $self->{seen}{$dist->{distvname}}++){$self->chat("Already tried $dist->{distvname}. Skipping.\n");return 1}if ($self->{cmd}eq 'info'){print$self->format_dist($dist),"\n";return 1}$dist->{depth}=$depth;if ($dist->{module}){unless ($self->satisfy_version($dist->{module},$dist->{module_version},$version)){$self->diag("Found $dist->{module} $dist->{module_version} which doesn't satisfy $version.\n",1);return}my$cmp=$version ? "==" : "";my$requirement=$dist->{module_version}? "$cmp$dist->{module_version}" : 0;my($ok,$local)=$self->check_module($dist->{module},$requirement);if ($self->{skip_installed}&& $ok){$self->diag("$dist->{module} is up to date. ($local)\n",1);return 1}}if ($dist->{dist}eq 'perl'){$self->diag("skipping $dist->{pathname}\n");return 1}$self->diag("--> Working on $module\n");$dist->{dir}||= $self->fetch_module($dist);unless ($dist->{dir}){$self->diag_fail("Failed to fetch distribution $dist->{distvname}",1);return}$self->chat("Entering $dist->{dir}\n");$self->chdir($self->{base});$self->chdir($dist->{dir});if ($self->{cmd}eq 'look'){$self->look;return 1}return$self->build_stuff($module,$dist,$depth)}sub uninstall_search_path {my$self=shift;$self->{local_lib}? (local::lib->install_base_arch_path($self->{local_lib}),local::lib->install_base_perl_path($self->{local_lib})): @Config{qw(installsitearch installsitelib)}}sub uninstall_module {my ($self,$module)=@_;$self->check_libs;my@inc=$self->uninstall_search_path;my($metadata,$packlist)=$self->packlists_containing($module,\@inc);unless ($packlist){$self->diag_fail(<<DIAG,1);return}my@uninst_files=$self->uninstall_target($metadata,$packlist);$self->ask_permission($module,\@uninst_files)or return;$self->uninstall_files(@uninst_files,$packlist);$self->diag("Successfully uninstalled $module\n",1);return 1}sub packlists_containing {my($self,$module,$inc)=@_;require Module::Metadata;my$metadata=Module::Metadata->new_from_module($module,inc=>$inc)or return;my$packlist;my$wanted=sub {return unless $_ eq '.packlist' && -f $_;for my$file ($self->unpack_packlist($File::Find::name)){$packlist ||= $File::Find::name if$file eq $metadata->filename}};{require File::pushd;my$pushd=File::pushd::pushd();my@search=grep -d $_,map File::Spec->catdir($_,'auto'),@$inc;File::Find::find($wanted,@search)}return$metadata,$packlist}sub uninstall_target {my($self,$metadata,$packlist)=@_;if ($self->has_shadow_install($metadata)or $self->{local_lib}){grep$self->should_unlink($_),$self->unpack_packlist($packlist)}else {$self->unpack_packlist($packlist)}}sub has_shadow_install {my($self,$metadata)=@_;my@shadow=grep defined,map Module::Metadata->new_from_module($metadata->name,inc=>[$_]),@INC;@shadow >= 2}sub should_unlink {my($self,$file)=@_;if ($self->{local_lib}){$file =~ /^\Q$self->{local_lib}\E/}else {!(grep$file =~ /^\Q$_\E/,@Config{qw(installbin installscript installman1dir installman3dir)})}}sub ask_permission {my ($self,$module,$files)=@_;$self->diag("$module contains the following files:\n\n");for my$file (@$files){$self->diag("  $file\n")}$self->diag("\n");return 'force uninstall' if$self->{force};local$self->{prompt}=1;return$self->prompt_bool("Are you sure you want to uninstall $module?",'y')}sub unpack_packlist {my ($self,$packlist)=@_;open my$fh,'<',$packlist or die "$packlist: $!";map {chomp;$_}<$fh>}sub uninstall_files {my ($self,@files)=@_;$self->diag("\n");for my$file (@files){$self->diag("Unlink: $file\n");unlink$file or $self->diag_fail("$!: $file")}$self->diag("\n");return 1}sub format_dist {my($self,$dist)=@_;return "$dist->{cpanid}/$dist->{filename}"}sub trim {local $_=shift;tr/\n/ /d;s/^\s*|\s*$//g;$_}sub fetch_module {my($self,$dist)=@_;$self->chdir($self->{base});for my$uri (@{$dist->{uris}}){$self->mask_output(diag_progress=>"Fetching $uri");my$filename=$dist->{filename}|| $uri;my$name=File::Basename::basename($filename);my$cancelled;my$fetch=sub {my$file;eval {local$SIG{INT}=sub {$cancelled=1;die "SIGINT\n"};$self->mirror($uri,$name);$file=$name if -e $name};$self->diag("ERROR: " .trim("$@")."\n",1)if $@ && $@ ne "SIGINT\n";return$file};my($try,$file);while ($try++ < 3){$file=$fetch->();last if$cancelled or $file;$self->mask_output(diag_fail=>"Download $uri failed. Retrying ... ")}if ($cancelled){$self->diag_fail("Download cancelled.");return}unless ($file){$self->mask_output(diag_fail=>"Failed to download $uri");next}$self->diag_ok;$dist->{local_path}=File::Spec->rel2abs($name);my$dir=$self->unpack($file,$uri,$dist);next unless$dir;if (my$save=$self->{save_dists}){my$path=$dist->{pathname}? "$save/authors/id/$dist->{pathname}" : "$save/vendor/$file";$self->chat("Copying $name to $path\n");File::Path::mkpath([File::Basename::dirname($path)],0,0777);File::Copy::copy($file,$path)or warn $!}return$dist,$dir}}sub unpack {my($self,$file,$uri,$dist)=@_;if ($self->{verify}){$self->verify_archive($file,$uri,$dist)or return}$self->chat("Unpacking $file\n");my$dir=$file =~ /\.zip/i ? $self->unzip($file): $self->untar($file);unless ($dir){$self->diag_fail("Failed to unpack $file: no directory")}return$dir}sub verify_checksums_signature {my($self,$chk_file)=@_;require Module::Signature;$self->chat("Verifying the signature of CHECKSUMS\n");my$rv=eval {local$SIG{__WARN__}=sub {};my$v=Module::Signature::_verify($chk_file);$v==Module::Signature::SIGNATURE_OK()};if ($rv){$self->chat("Verified OK!\n")}else {$self->diag_fail("Verifying CHECKSUMS signature failed: $rv\n");return}return 1}sub verify_archive {my($self,$file,$uri,$dist)=@_;unless ($dist->{cpanid}){$self->chat("Archive '$file' does not seem to be from PAUSE. Skip verification.\n");return 1}(my$mirror=$uri)=~ s!/authors/id.*$!!;(my$chksum_uri=$uri)=~ s!/[^/]*$!/CHECKSUMS!;my$chk_file=$self->source_for($mirror)."/$dist->{cpanid}.CHECKSUMS";$self->mask_output(diag_progress=>"Fetching $chksum_uri");$self->mirror($chksum_uri,$chk_file);unless (-e $chk_file){$self->diag_fail("Fetching $chksum_uri failed.\n");return}$self->diag_ok;$self->verify_checksums_signature($chk_file)or return;$self->verify_checksum($file,$chk_file)}sub verify_checksum {my($self,$file,$chk_file)=@_;$self->chat("Verifying the SHA1 for $file\n");open my$fh,"<$chk_file" or die "$chk_file: $!";my$data=join '',<$fh>;$data =~ s/\015?\012/\n/g;require Safe;my$chksum=Safe->new->reval($data);if (!ref$chksum or ref$chksum ne 'HASH'){$self->diag_fail("! Checksum file downloaded from $chk_file is broken.\n");return}if (my$sha=$chksum->{$file}{sha256}){my$hex=$self->sha1_for($file);if ($hex eq $sha){$self->chat("Checksum for $file: Verified!\n")}else {$self->diag_fail("Checksum mismatch for $file\n");return}}else {$self->chat("Checksum for $file not found in CHECKSUMS.\n");return}}sub sha1_for {my($self,$file)=@_;require Digest::SHA;open my$fh,"<",$file or die "$file: $!";my$dg=Digest::SHA->new(256);my($data);while (read($fh,$data,4096)){$dg->add($data)}return$dg->hexdigest}sub verify_signature {my($self,$dist)=@_;$self->diag_progress("Verifying the SIGNATURE file");my$out=`$self->{cpansign} -v --skip 2>&1`;$self->log($out);if ($out =~ /Signature verified OK/){$self->diag_ok("Verified OK");return 1}else {$self->diag_fail("SIGNATURE verificaion for $dist->{filename} failed\n");return}}sub resolve_name {my($self,$module,$version)=@_;if ($module =~ /(?:^git:|\.git(?:@.+)?$)/){return$self->git_uri($module)}if ($module =~ /^(ftp|https?|file):/){if ($module =~ m!authors/id/(.*)!){return$self->cpan_dist($1,$module)}else {return {uris=>[$module ]}}}if ($module =~ m!^[\./]! && -d $module){return {source=>'local',dir=>Cwd::abs_path($module),}}if (-f $module){return {source=>'local',uris=>["file://" .Cwd::abs_path($module)],}}if ($module =~ s!^cpan:///distfile/!!){return$self->cpan_dist($module)}if ($module =~ m!^(?:[A-Z]/[A-Z]{2}/)?([A-Z]{2}[\-A-Z0-9]*/.*)$!){return$self->cpan_dist($1)}return$self->search_module($module,$version)}sub cpan_module {my($self,$module,$dist,$version)=@_;my$dist=$self->cpan_dist($dist);$dist->{module}=$module;$dist->{module_version}=$version if$version && $version ne 'undef';return$dist}sub cpan_dist {my($self,$dist,$url)=@_;$dist =~ s!^([A-Z]{2})!substr($1,0,1)."/".substr($1,0,2)."/".$1!e;require CPAN::DistnameInfo;my$d=CPAN::DistnameInfo->new($dist);if ($url){$url=[$url ]unless ref$url eq 'ARRAY'}else {my$id=$d->cpanid;my$fn=substr($id,0,1)."/" .substr($id,0,2)."/" .$id ."/" .$d->filename;my@mirrors=@{$self->{mirrors}};my@urls=map "$_/authors/id/$fn",@mirrors;$url=\@urls,}return {$d->properties,source=>'cpan',uris=>$url,}}sub git_uri {my ($self,$uri)=@_;($uri,my$commitish)=split /(?<=\.git)@/i,$uri,2;my$dir=File::Temp::tempdir(CLEANUP=>1);$self->mask_output(diag_progress=>"Cloning $uri");$self->run(['git','clone',$uri,$dir ]);unless (-e "$dir/.git"){$self->diag_fail("Failed cloning git repository $uri",1);return}if ($commitish){require File::pushd;my$dir=File::pushd::pushd($dir);unless ($self->run(['git','checkout',$commitish ])){$self->diag_fail("Failed to checkout '$commitish' in git repository $uri\n");return}}$self->diag_ok;return {source=>'local',dir=>$dir,}}sub setup_module_build_patch {my$self=shift;open my$out,">$self->{base}/ModuleBuildSkipMan.pm" or die $!;print$out <<EOF}sub core_version_for {my($self,$module)=@_;require Module::CoreList;unless (exists$Module::CoreList::version{$]+0}){die sprintf("Module::CoreList %s (loaded from %s) doesn't seem to have entries for perl $]. " ."You're strongly recommended to upgrade Module::CoreList from CPAN.\n",$Module::CoreList::VERSION,$INC{"Module/CoreList.pm"})}unless (exists$Module::CoreList::version{$]+0}{$module}){return -1}return$Module::CoreList::version{$]+0}{$module}}sub search_inc {my$self=shift;$self->{search_inc}||= do {if (defined$::Bin){[grep!/^\Q$::Bin\E\/..\/(?:fat)?lib$/,@INC]}else {[@INC]}}}sub check_module {my($self,$mod,$want_ver)=@_;require Module::Metadata;my$meta=Module::Metadata->new_from_module($mod,inc=>$self->search_inc)or return 0,undef;my$version=$meta->version;if ($self->{self_contained}&& $self->loaded_from_perl_lib($meta)){$version=$self->core_version_for($mod);return 0,undef if$version && $version==-1}$self->{local_versions}{$mod}=$version;if ($self->is_deprecated($meta)){return 0,$version}elsif ($self->satisfy_version($mod,$version,$want_ver)){return 1,($version || 'undef')}else {return 0,$version}}sub satisfy_version {my($self,$mod,$version,$want_ver)=@_;$want_ver='0' unless defined($want_ver)&& length($want_ver);require CPAN::Meta::Requirements;my$requirements=CPAN::Meta::Requirements->new;$requirements->add_string_requirement($mod,$want_ver);$requirements->accepts_module($mod,$version)}sub unsatisfy_how {my($self,$ver,$want_ver)=@_;if ($want_ver =~ /^[v0-9\.\_]+$/){return "$ver < $want_ver"}else {return "$ver doesn't satisfy $want_ver"}}sub is_deprecated {my($self,$meta)=@_;my$deprecated=eval {require Module::CoreList;Module::CoreList::is_deprecated($meta->{module})};return$deprecated && $self->loaded_from_perl_lib($meta)}sub loaded_from_perl_lib {my($self,$meta)=@_;require Config;my@dirs=qw(archlibexp privlibexp);if ($self->{self_contained}&&!$self->{exclude_vendor}&& $Config{vendorarch}){unshift@dirs,qw(vendorarch vendorlibexp)}for my$dir (@dirs){my$confdir=$Config{$dir};if ($confdir eq substr($meta->filename,0,length($confdir))){return 1}}return}sub should_install {my($self,$mod,$ver)=@_;$self->chat("Checking if you have $mod $ver ... ");my($ok,$local)=$self->check_module($mod,$ver);if ($ok){$self->chat("Yes ($local)\n")}elsif ($local){$self->chat("No (" .$self->unsatisfy_how($local,$ver).")\n")}else {$self->chat("No\n")}return$mod unless$ok;return}sub check_perl_version {my($self,$version)=@_;require CPAN::Meta::Requirements;my$req=CPAN::Meta::Requirements->from_string_hash({perl=>$version });$req->accepts_module(perl=>$])}sub install_deps {my($self,$dir,$depth,@deps)=@_;my(@install,%seen,@fail);for my$dep (@deps){next if$seen{$dep->module};if ($dep->module eq 'perl'){if ($dep->is_requirement &&!$self->check_perl_version($dep->version)){$self->diag("Needs perl @{[$dep->version]}, you have $]\n");push@fail,'perl'}}elsif ($self->should_install($dep->module,$dep->version)){push@install,$dep;$seen{$dep->module}=1}}if (@install){$self->diag("==> Found dependencies: " .join(", ",map $_->module,@install)."\n")}for my$dep (@install){$self->install_module($dep->module,$depth + 1,$dep->version)}$self->chdir($self->{base});$self->chdir($dir)if$dir;if ($self->{scandeps}){return 1}my@not_ok=$self->unsatisfied_deps(@deps);if (@not_ok){return 0,\@not_ok}else {return 1}}sub unsatisfied_deps {my($self,@deps)=@_;require CPAN::Meta::Check;require CPAN::Meta::Requirements;my$reqs=CPAN::Meta::Requirements->new;for my$dep (grep $_->is_requirement,@deps){$reqs->add_string_requirement($dep->module=>$dep->requires_version || '0')}my$ret=CPAN::Meta::Check::check_requirements($reqs,'requires',$self->{search_inc});grep defined,values %$ret}sub install_deps_bailout {my($self,$target,$dir,$depth,@deps)=@_;my($ok,$fail)=$self->install_deps($dir,$depth,@deps);if (!$ok){$self->diag_fail("Installing the dependencies failed: " .join(", ",@$fail),1);unless ($self->prompt_bool("Do you want to continue building $target anyway?","n")){$self->diag_fail("Bailing out the installation for $target.",1);return}}return 1}sub build_stuff {my($self,$stuff,$dist,$depth)=@_;if ($self->{verify}&& -e 'SIGNATURE'){$self->verify_signature($dist)or return}require CPAN::Meta;my($meta_file)=grep -f,qw(META.json META.yml);if ($meta_file){$self->chat("Checking configure dependencies from $meta_file\n");$dist->{cpanmeta}=eval {CPAN::Meta->load_file($meta_file)}}elsif ($dist->{dist}&& $dist->{version}){$self->chat("META.yml/json not found. Creating skeleton for it.\n");$dist->{cpanmeta}=CPAN::Meta->new({name=>$dist->{dist},version=>$dist->{version}})}$dist->{meta}=$dist->{cpanmeta}? $dist->{cpanmeta}->as_struct : {};my@config_deps;if ($dist->{cpanmeta}){push@config_deps,App::cpanminus::Dependency->from_prereqs($dist->{cpanmeta}->effective_prereqs,['configure'],$self->{install_types},)}if (-e 'Build.PL' &&!$self->should_use_mm($dist->{dist})&&!@config_deps){push@config_deps,App::cpanminus::Dependency->from_versions({'Module::Build'=>'0.38' },'configure',)}$self->upgrade_toolchain(\@config_deps);my$target=$dist->{meta}{name}? "$dist->{meta}{name}-$dist->{meta}{version}" : $dist->{dir};{local$self->{notest}=1;$self->install_deps_bailout($target,$dist->{dir},$depth,@config_deps)or return}$self->diag_progress("Configuring $target");my$configure_state=$self->configure_this($dist,$depth);$self->diag_ok($configure_state->{configured_ok}? "OK" : "N/A");if ($dist->{cpanmeta}&& $dist->{source}eq 'cpan'){$dist->{provides}=$dist->{cpanmeta}{provides}|| $self->extract_packages($dist->{cpanmeta},".")}my$root_target=(($self->{installdeps}or $self->{showdeps})and $depth==0);$dist->{want_phases}=$self->{notest}&&!$root_target ? [qw(build runtime)]: [qw(build test runtime)];push @{$dist->{want_phases}},'develop' if$self->{with_develop}&& $depth==0;my@deps=$self->find_prereqs($dist);my$module_name=$self->find_module_name($configure_state)|| $dist->{meta}{name};$module_name =~ s/-/::/g;if ($self->{showdeps}){for my$dep (@config_deps,@deps){print$dep->module,($dep->version ? ("~".$dep->version): ""),"\n"}return 1}my$distname=$dist->{meta}{name}? "$dist->{meta}{name}-$dist->{meta}{version}" : $stuff;my$walkup;if ($self->{scandeps}){$walkup=$self->scandeps_append_child($dist)}$self->install_deps_bailout($distname,$dist->{dir},$depth,@deps)or return;if ($self->{scandeps}){unless ($configure_state->{configured_ok}){my$diag=<<DIAG;if (@config_deps){my@tree=@{$self->{scandeps_tree}};$diag .= "!\n" .join("",map "! * $_->[0]{module}\n",@tree[0..$#tree-1])if@tree}$self->diag("!\n$diag!\n",1)}$walkup->();return 1}if ($self->{installdeps}&& $depth==0){if ($configure_state->{configured_ok}){$self->diag("<== Installed dependencies for $stuff. Finishing.\n");return 1}else {$self->diag("! Configuring $distname failed. See $self->{log} for details.\n",1);return}}my$installed;if ($configure_state->{use_module_build}&& -e 'Build' && -f _){$self->diag_progress("Building " .($self->{notest}? "" : "and testing ").$distname);$self->build([$self->{perl},"./Build" ],$distname,$depth)&& $self->test([$self->{perl},"./Build","test" ],$distname,$depth)&& $self->install([$self->{perl},"./Build","install" ],["--uninst",1 ],$depth)&& $installed++}elsif ($self->{make}&& -e 'Makefile'){$self->diag_progress("Building " .($self->{notest}? "" : "and testing ").$distname);$self->build([$self->{make}],$distname,$depth)&& $self->test([$self->{make},"test" ],$distname,$depth)&& $self->install([$self->{make},"install" ],["UNINST=1" ],$depth)&& $installed++}else {my$why;my$configure_failed=$configure_state->{configured}&&!$configure_state->{configured_ok};if ($configure_failed){$why="Configure failed for $distname."}elsif ($self->{make}){$why="The distribution doesn't have a proper Makefile.PL/Build.PL"}else {$why="Can't configure the distribution. You probably need to have 'make'."}$self->diag_fail("$why See $self->{log} for details.",1);return}if ($installed && $self->{test_only}){$self->diag_ok;$self->diag("Successfully tested $distname\n",1)}elsif ($installed){my$local=$self->{local_versions}{$dist->{module}|| ''};my$version=$dist->{module_version}|| $dist->{meta}{version}|| $dist->{version};my$reinstall=$local && ($local eq $version);my$action=$local &&!$reinstall ? $self->numify_ver($version)< $self->numify_ver($local)? "downgraded" : "upgraded" : undef;my$how=$reinstall ? "reinstalled $distname" : $local ? "installed $distname ($action from $local)" : "installed $distname" ;my$msg="Successfully $how";$self->diag_ok;$self->diag("$msg\n",1);$self->{installed_dists}++;$self->save_meta($stuff,$dist,$module_name,\@config_deps,\@deps);return 1}else {my$what=$self->{test_only}? "Testing" : "Installing";$self->diag_fail("$what $stuff failed. See $self->{log} for details. Retry with --force to force install it.",1);return}}sub perl_requirements {my($self,@requires)=@_;my@perl;for my$requires (grep defined,@requires){if (exists$requires->{perl}){push@perl,App::cpanminus::Dependency->new(perl=>$requires->{perl})}}return@perl}sub should_use_mm {my($self,$dist)=@_;my%should_use_mm=map {$_=>1}qw(version ExtUtils-ParseXS ExtUtils-Install ExtUtils-Manifest);$should_use_mm{$dist}}sub configure_this {my($self,$dist,$depth)=@_;if (-e $self->{cpanfile_path}&& $self->{installdeps}&& $depth==0){require Module::CPANfile;$dist->{cpanfile}=eval {Module::CPANfile->load($self->{cpanfile_path})};$self->diag_fail($@,1)if $@;return {configured=>1,configured_ok=>!!$dist->{cpanfile},use_module_build=>0,}}if ($self->{skip_configure}){my$eumm=-e 'Makefile';my$mb=-e 'Build' && -f _;return {configured=>1,configured_ok=>$eumm || $mb,use_module_build=>$mb,}}my$state={};my$try_eumm=sub {if (-e 'Makefile.PL'){$self->chat("Running Makefile.PL\n");if ($self->configure([$self->{perl},"Makefile.PL" ],$depth)){$state->{configured_ok}=-e 'Makefile'}$state->{configured}++}};my$try_mb=sub {if (-e 'Build.PL'){$self->chat("Running Build.PL\n");if ($self->configure([$self->{perl},"Build.PL" ],$depth)){$state->{configured_ok}=-e 'Build' && -f _}$state->{use_module_build}++;$state->{configured}++}};my@try;if ($dist->{dist}&& $self->should_use_mm($dist->{dist})){@try=($try_eumm,$try_mb)}else {@try=($try_mb,$try_eumm)}for my$try (@try){$try->();last if$state->{configured_ok}}unless ($state->{configured_ok}){while (1){my$ans=lc$self->prompt("Configuring $dist->{dist} failed.\nYou can s)kip, r)etry, e)xamine build log, or l)ook ?","s");last if$ans eq 's';return$self->configure_this($dist,$depth)if$ans eq 'r';$self->show_build_log if$ans eq 'e';$self->look if$ans eq 'l'}}return$state}sub find_module_name {my($self,$state)=@_;return unless$state->{configured_ok};if ($state->{use_module_build}&& -e "_build/build_params"){my$params=do {open my$in,"_build/build_params";$self->safe_eval(join "",<$in>)};return eval {$params->[2]{module_name}}|| undef}elsif (-e "Makefile"){open my$mf,"Makefile";while (<$mf>){if (/^\#\s+NAME\s+=>\s+(.*)/){return$self->safe_eval($1)}}}return}sub list_files {my$self=shift;if (-e 'MANIFEST'){require ExtUtils::Manifest;my$manifest=eval {ExtUtils::Manifest::manifind()}|| {};return sort {lc$a cmp lc$b}keys %$manifest}else {require File::Find;my@files;my$finder=sub {my$name=$File::Find::name;$name =~ s!\.[/\\]!!;push@files,$name};File::Find::find($finder,".");return sort {lc$a cmp lc$b}@files}}sub extract_packages {my($self,$meta,$dir)=@_;my$try=sub {my$file=shift;return 0 if$file =~ m!^(?:x?t|inc|local|perl5|fatlib|_build)/!;return 1 unless$meta->{no_index};return 0 if grep {$file =~ m!^$_/!}@{$meta->{no_index}{directory}|| []};return 0 if grep {$file eq $_}@{$meta->{no_index}{file}|| []};return 1};require Parse::PMFile;my@files=grep {/\.pm(?:\.PL)?$/ && $try->($_)}$self->list_files;my$provides={};for my$file (@files){my$parser=Parse::PMFile->new($meta,{UNSAFE=>1,ALLOW_DEV_VERSION=>1 });my$packages=$parser->parse($file);while (my($package,$meta)=each %$packages){$provides->{$package}||= {file=>$meta->{infile},($meta->{version}eq 'undef')? (): (version=>$meta->{version}),}}}return$provides}sub save_meta {my($self,$module,$dist,$module_name,$config_deps,$build_deps)=@_;return unless$dist->{distvname}&& $dist->{source}eq 'cpan';my$base=($ENV{PERL_MM_OPT}|| '')=~ /INSTALL_BASE=/ ? ($self->install_base($ENV{PERL_MM_OPT})."/lib/perl5"): $Config{sitelibexp};my$provides=$dist->{provides};File::Path::mkpath("blib/meta",0,0777);my$local={name=>$module_name,target=>$module,version=>exists$provides->{$module_name}? ($provides->{$module_name}{version}|| $dist->{version}): $dist->{version},dist=>$dist->{distvname},pathname=>$dist->{pathname},provides=>$provides,};require JSON::PP;open my$fh,">","blib/meta/install.json" or die $!;print$fh JSON::PP::encode_json($local);if (-e "MYMETA.json"){File::Copy::copy("MYMETA.json","blib/meta/MYMETA.json")}my@cmd=(($self->{sudo}? 'sudo' : ()),$^X,'-MExtUtils::Install=install','-e',qq[install({ 'blib/meta' => '$base/$Config{archname}/.meta/$dist->{distvname}' })],);$self->run(\@cmd)}sub _merge_hashref {my($self,@hashrefs)=@_;my%hash;for my$h (@hashrefs){%hash=(%hash,%$h)}return \%hash}sub install_base {my($self,$mm_opt)=@_;$mm_opt =~ /INSTALL_BASE=(\S+)/ and return $1;die "Your PERL_MM_OPT doesn't contain INSTALL_BASE"}sub safe_eval {my($self,$code)=@_;eval$code}sub configure_features {my($self,$dist,@features)=@_;map $_->identifier,grep {$self->effective_feature($dist,$_)}@features}sub effective_feature {my($self,$dist,$feature)=@_;if ($dist->{depth}==0){my$value=$self->{features}{$feature->identifier};return$value if defined$value;return 1 if$self->{features}{__all}}if ($self->{interactive}){require CPAN::Meta::Requirements;$self->diag("[@{[ $feature->description ]}]\n",1);my$req=CPAN::Meta::Requirements->new;for my$phase (@{$dist->{want_phases}}){for my$type (@{$self->{install_types}}){$req->add_requirements($feature->prereqs->requirements_for($phase,$type))}}my$reqs=$req->as_string_hash;my@missing;for my$module (keys %$reqs){if ($self->should_install($module,$req->{$module})){push@missing,$module}}if (@missing){my$howmany=@missing;$self->diag("==> Found missing dependencies: " .join(", ",@missing)."\n",1);local$self->{prompt}=1;return$self->prompt_bool("Install the $howmany optional module(s)?","y")}}return}sub find_prereqs {my($self,$dist)=@_;my@deps=$self->extract_meta_prereqs($dist);if ($dist->{module}=~ /^Bundle::/i){push@deps,$self->bundle_deps($dist)}if ($self->{cpanfile_requirements}&&!$dist->{cpanfile}){for my$dep (@deps){$dep->merge_with($self->{cpanfile_requirements})}}return@deps}sub extract_meta_prereqs {my($self,$dist)=@_;if ($dist->{cpanfile}){my@features=$self->configure_features($dist,$dist->{cpanfile}->features);my$prereqs=$dist->{cpanfile}->prereqs_with(@features);$self->{cpanfile_requirements}=$prereqs->merged_requirements($dist->{want_phases},['requires']);return App::cpanminus::Dependency->from_prereqs($prereqs,$dist->{want_phases},$self->{install_types})}require CPAN::Meta;my@deps;my($meta_file)=grep -f,qw(MYMETA.json MYMETA.yml);if ($meta_file){$self->chat("Checking dependencies from $meta_file ...\n");my$mymeta=eval {CPAN::Meta->load_file($meta_file,{lazy_validation=>1 })};if ($mymeta){$dist->{meta}{name}=$mymeta->name;$dist->{meta}{version}=$mymeta->version;return$self->extract_prereqs($mymeta,$dist)}}if (-e '_build/prereqs'){$self->chat("Checking dependencies from _build/prereqs ...\n");my$prereqs=do {open my$in,"_build/prereqs";$self->safe_eval(join "",<$in>)};my$meta=CPAN::Meta->new({name=>$dist->{meta}{name},version=>$dist->{meta}{version},%$prereqs },{lazy_validation=>1 },);@deps=$self->extract_prereqs($meta,$dist)}elsif (-e 'Makefile'){$self->chat("Finding PREREQ from Makefile ...\n");open my$mf,"Makefile";while (<$mf>){if (/^\#\s+PREREQ_PM => \{\s*(.*?)\s*\}/){my@all;my@pairs=split ', ',$1;for (@pairs){my ($pkg,$v)=split '=>',$_;push@all,[$pkg,$v ]}my$list=join ", ",map {"'$_->[0]' => $_->[1]"}@all;my$prereq=$self->safe_eval("no strict; +{ $list }");push@deps,App::cpanminus::Dependency->from_versions($prereq)if$prereq;last}}}return@deps}sub bundle_deps {my($self,$dist)=@_;my@files;File::Find::find({wanted=>sub {push@files,File::Spec->rel2abs($_)if /\.pm/i},no_chdir=>1,},'.');my@deps;for my$file (@files){open my$pod,"<",$file or next;my$in_contents;while (<$pod>){if (/^=head\d\s+CONTENTS/){$in_contents=1}elsif (/^=/){$in_contents=0}elsif ($in_contents){/^(\S+)\s*(\S+)?/ and push@deps,App::cpanminus::Dependency->new($1,$self->maybe_version($2))}}}return@deps}sub maybe_version {my($self,$string)=@_;return$string && $string =~ /^\.?\d/ ? $string : undef}sub extract_prereqs {my($self,$meta,$dist)=@_;my@features=$self->configure_features($dist,$meta->features);my$prereqs=$self->soften_makemaker_prereqs($meta->effective_prereqs(\@features)->clone);return App::cpanminus::Dependency->from_prereqs($prereqs,$dist->{want_phases},$self->{install_types})}sub soften_makemaker_prereqs {my($self,$prereqs)=@_;return$prereqs unless -e "inc/Module/Install.pm";for my$phase (qw(build test runtime)){my$reqs=$prereqs->requirements_for($phase,'requires');if ($reqs->requirements_for_module('ExtUtils::MakeMaker')){$reqs->clear_requirement('ExtUtils::MakeMaker');$reqs->add_minimum('ExtUtils::MakeMaker'=>0)}}$prereqs}sub cleanup_workdirs {my$self=shift;my$expire=time - 24 * 60 * 60 * $self->{auto_cleanup};my@targets;opendir my$dh,"$self->{home}/work";while (my$e=readdir$dh){next if$e !~ /^(\d+)\.\d+$/;my$time=$1;if ($time < $expire){push@targets,"$self->{home}/work/$e"}}if (@targets){if (@targets >= 64){$self->diag("Expiring " .scalar(@targets)." work directories. This might take a while...\n")}else {$self->chat("Expiring " .scalar(@targets)." work directories.\n")}File::Path::rmtree(\@targets,0,0)}}sub scandeps_append_child {my($self,$dist)=@_;my$new_node=[$dist,[]];my$curr_node=$self->{scandeps_current}|| [undef,$self->{scandeps_tree}];push @{$curr_node->[1]},$new_node;$self->{scandeps_current}=$new_node;return sub {$self->{scandeps_current}=$curr_node}}sub dump_scandeps {my$self=shift;if ($self->{format}eq 'tree'){$self->walk_down(sub {my($dist,$depth)=@_;if ($depth==0){print "$dist->{distvname}\n"}else {print " " x ($depth - 1);print "\\_ $dist->{distvname}\n"}},1)}elsif ($self->{format}=~ /^dists?$/){$self->walk_down(sub {my($dist,$depth)=@_;print$self->format_dist($dist),"\n"},0)}elsif ($self->{format}eq 'json'){require JSON::PP;print JSON::PP::encode_json($self->{scandeps_tree})}elsif ($self->{format}eq 'yaml'){require YAML;print YAML::Dump($self->{scandeps_tree})}else {$self->diag("Unknown format: $self->{format}\n")}}sub walk_down {my($self,$cb,$pre)=@_;$self->_do_walk_down($self->{scandeps_tree},$cb,0,$pre)}sub _do_walk_down {my($self,$children,$cb,$depth,$pre)=@_;for my$node (@$children){$cb->($node->[0],$depth)if$pre;$self->_do_walk_down($node->[1],$cb,$depth + 1,$pre);$cb->($node->[0],$depth)unless$pre}}sub DESTROY {my$self=shift;$self->{at_exit}->($self)if$self->{at_exit}}sub shell_quote {my($self,@stuff)=@_;if (WIN32){join ' ',map {/^${quote}.+${quote}$/ ? $_ : ($quote .$_ .$quote)}@stuff}else {String::ShellQuote::shell_quote_best_effort(@stuff)}}sub which {my($self,$name)=@_;if (File::Spec->file_name_is_absolute($name)){if (-x $name &&!-d _){return$name}}my$exe_ext=$Config{_exe};for my$dir (File::Spec->path){my$fullpath=File::Spec->catfile($dir,$name);if ((-x $fullpath || -x ($fullpath .= $exe_ext))&&!-d _){if ($fullpath =~ /\s/){$fullpath=$self->shell_quote($fullpath)}return$fullpath}}return}sub get {my($self,$uri)=@_;if ($uri =~ /^file:/){$self->file_get($uri)}else {$self->{_backends}{get}->(@_)}}sub mirror {my($self,$uri,$local)=@_;if ($uri =~ /^file:/){$self->file_mirror($uri,$local)}else {$self->{_backends}{mirror}->(@_)}}sub untar {$_[0]->{_backends}{untar}->(@_)};sub unzip {$_[0]->{_backends}{unzip}->(@_)};sub uri_to_file {my($self,$uri)=@_;if ($uri =~ s!file:/+!!){$uri="/$uri" unless$uri =~ m![a-zA-Z]:!}return$uri}sub file_get {my($self,$uri)=@_;my$file=$self->uri_to_file($uri);open my$fh,"<$file" or return;join '',<$fh>}sub file_mirror {my($self,$uri,$path)=@_;my$file=$self->uri_to_file($uri);File::Copy::copy($file,$path)}sub has_working_lwp {my($self,$mirrors)=@_;my$https=grep /^https:/,@$mirrors;eval {require LWP::UserAgent;LWP::UserAgent->VERSION(5.802);require LWP::Protocol::https if$https;1}}sub init_tools {my$self=shift;return if$self->{initialized}++;if ($self->{make}=$self->which($Config{make})){$self->chat("You have make $self->{make}\n")}if ($self->{try_lwp}&& $self->has_working_lwp($self->{mirrors})){$self->chat("You have LWP $LWP::VERSION\n");my$ua=sub {LWP::UserAgent->new(parse_head=>0,env_proxy=>1,agent=>$self->agent,timeout=>30,@_,)};$self->{_backends}{get}=sub {my$self=shift;my$res=$ua->()->request(HTTP::Request->new(GET=>$_[0]));return unless$res->is_success;return$res->decoded_content};$self->{_backends}{mirror}=sub {my$self=shift;my$res=$ua->()->mirror(@_);die$res->content if$res->code==501;$res->code}}elsif ($self->{try_wget}and my$wget=$self->which('wget')){$self->chat("You have $wget\n");my@common=('--user-agent',$self->agent,'--retry-connrefused',($self->{verbose}? (): ('-q')),);$self->{_backends}{get}=sub {my($self,$uri)=@_;$self->safeexec(my$fh,$wget,$uri,@common,'-O','-')or die "wget $uri: $!";local $/;<$fh>};$self->{_backends}{mirror}=sub {my($self,$uri,$path)=@_;$self->safeexec(my$fh,$wget,$uri,@common,'-O',$path)or die "wget $uri: $!";local $/;<$fh>}}elsif ($self->{try_curl}and my$curl=$self->which('curl')){$self->chat("You have $curl\n");my@common=('--location','--user-agent',$self->agent,($self->{verbose}? (): '-s'),);$self->{_backends}{get}=sub {my($self,$uri)=@_;$self->safeexec(my$fh,$curl,@common,$uri)or die "curl $uri: $!";local $/;<$fh>};$self->{_backends}{mirror}=sub {my($self,$uri,$path)=@_;$self->safeexec(my$fh,$curl,@common,$uri,'-#','-o',$path)or die "curl $uri: $!";local $/;<$fh>}}else {require HTTP::Tiny;$self->chat("Falling back to HTTP::Tiny $HTTP::Tiny::VERSION\n");my%common=(agent=>$self->agent,);$self->{_backends}{get}=sub {my$self=shift;my$res=HTTP::Tiny->new(%common)->get($_[0]);return unless$res->{success};return$res->{content}};$self->{_backends}{mirror}=sub {my$self=shift;my$res=HTTP::Tiny->new(%common)->mirror(@_);return$res->{status}}}my$tar=$self->which('tar');my$tar_ver;my$maybe_bad_tar=sub {WIN32 || BAD_TAR || (($tar_ver=`$tar --version 2>/dev/null`)=~ /GNU.*1\.13/i)};if ($tar &&!$maybe_bad_tar->()){chomp$tar_ver;$self->chat("You have $tar: $tar_ver\n");$self->{_backends}{untar}=sub {my($self,$tarfile)=@_;my$xf=($self->{verbose}? 'v' : '')."xf";my$ar=$tarfile =~ /bz2$/ ? 'j' : 'z';my($root,@others)=`$tar ${ar}tf $tarfile` or return undef;FILE: {chomp$root;$root =~ s!^\./!!;$root =~ s{^(.+?)/.*$}{$1};if (!length($root)){$root=shift(@others);redo FILE if$root}}system "$tar $ar$xf $tarfile";return$root if -d $root;$self->diag_fail("Bad archive: $tarfile");return undef}}elsif ($tar and my$gzip=$self->which('gzip')and my$bzip2=$self->which('bzip2')){$self->chat("You have $tar, $gzip and $bzip2\n");$self->{_backends}{untar}=sub {my($self,$tarfile)=@_;my$x="x" .($self->{verbose}? 'v' : '')."f -";my$ar=$tarfile =~ /bz2$/ ? $bzip2 : $gzip;my($root,@others)=`$ar -dc $tarfile | $tar tf -` or return undef;FILE: {chomp$root;$root =~ s!^\./!!;$root =~ s{^(.+?)/.*$}{$1};if (!length($root)){$root=shift(@others);redo FILE if$root}}system "$ar -dc $tarfile | $tar $x";return$root if -d $root;$self->diag_fail("Bad archive: $tarfile");return undef}}elsif (eval {require Archive::Tar}){$self->chat("Falling back to Archive::Tar $Archive::Tar::VERSION\n");$self->{_backends}{untar}=sub {my$self=shift;my$t=Archive::Tar->new($_[0]);my($root,@others)=$t->list_files;FILE: {$root =~ s!^\./!!;$root =~ s{^(.+?)/.*$}{$1};if (!length($root)){$root=shift(@others);redo FILE if$root}}$t->extract;return -d $root ? $root : undef}}else {$self->{_backends}{untar}=sub {die "Failed to extract $_[1] - You need to have tar or Archive::Tar installed.\n"}}if (my$unzip=$self->which('unzip')){$self->chat("You have $unzip\n");$self->{_backends}{unzip}=sub {my($self,$zipfile)=@_;my$opt=$self->{verbose}? '' : '-q';my(undef,$root,@others)=`$unzip -t $zipfile` or return undef;chomp$root;$root =~ s{^\s+testing:\s+([^/]+)/.*?\s+OK$}{$1};system "$unzip $opt $zipfile";return$root if -d $root;$self->diag_fail("Bad archive: [$root] $zipfile");return undef}}else {$self->{_backends}{unzip}=sub {eval {require Archive::Zip}or die "Failed to extract $_[1] - You need to have unzip or Archive::Zip installed.\n";my($self,$file)=@_;my$zip=Archive::Zip->new();my$status;$status=$zip->read($file);$self->diag_fail("Read of file[$file] failed")if$status!=Archive::Zip::AZ_OK();my@members=$zip->members();for my$member (@members){my$af=$member->fileName();next if ($af =~ m!^(/|\.\./)!);$status=$member->extractToFileNamed($af);$self->diag_fail("Extracting of file[$af] from zipfile[$file failed")if$status!=Archive::Zip::AZ_OK()}my ($root)=$zip->membersMatching(qr<^[^/]+/$>);$root &&= $root->fileName;return -d $root ? $root : undef}}}sub safeexec {my$self=shift;my$rdr=$_[0]||= Symbol::gensym();if (WIN32){my$cmd=$self->shell_quote(@_[1..$#_]);return open($rdr,"$cmd |")}if (my$pid=open($rdr,'-|')){return$pid}elsif (defined$pid){exec(@_[1 .. $#_ ]);exit 1}else {return}}sub mask_uri_passwords {my($self,@strings)=@_;s{ (https?://) ([^:/]+) : [^@/]+ @ }{$1$2:********@}gx for@strings;return@strings}1;
+  package App::cpanminus::script;use strict;use Config;use Cwd ();use App::cpanminus;use App::cpanminus::Dependency;use File::Basename ();use File::Find ();use File::Path ();use File::Spec ();use File::Copy ();use File::Temp ();use Getopt::Long ();use Symbol ();use String::ShellQuote ();use version ();use constant WIN32=>$^O eq 'MSWin32';use constant BAD_TAR=>($^O eq 'solaris' || $^O eq 'hpux');use constant CAN_SYMLINK=>eval {symlink("","");1};our$VERSION=$App::cpanminus::VERSION;if ($INC{"App/FatPacker/Trace.pm"}){require version::vpp}my$quote=WIN32 ? q/"/ : q/'/;sub agent {my$self=shift;my$agent="cpanminus/$VERSION";$agent .= " perl/$]" if$self->{report_perl_version};$agent}sub determine_home {my$class=shift;my$homedir=$ENV{HOME}|| eval {require File::HomeDir;File::HomeDir->my_home}|| join('',@ENV{qw(HOMEDRIVE HOMEPATH)});if (WIN32){require Win32;$homedir=Win32::GetShortPathName($homedir)}return "$homedir/.cpanm"}sub new {my$class=shift;bless {home=>$class->determine_home,cmd=>'install',seen=>{},notest=>undef,test_only=>undef,installdeps=>undef,force=>undef,sudo=>undef,make=>undef,verbose=>undef,quiet=>undef,interactive=>undef,log=>undef,mirrors=>[],mirror_only=>undef,mirror_index=>undef,cpanmetadb=>"http://cpanmetadb.plackperl.org/v1.0/",perl=>$^X,argv=>[],local_lib=>undef,self_contained=>undef,exclude_vendor=>undef,prompt_timeout=>0,prompt=>undef,configure_timeout=>60,build_timeout=>3600,test_timeout=>1800,try_lwp=>1,try_wget=>1,try_curl=>1,uninstall_shadows=>($] < 5.012),skip_installed=>1,skip_satisfied=>0,auto_cleanup=>7,pod2man=>1,installed_dists=>0,install_types=>['requires'],with_develop=>0,with_configure=>0,showdeps=>0,scandeps=>0,scandeps_tree=>[],format=>'tree',save_dists=>undef,skip_configure=>0,verify=>0,report_perl_version=>!$class->maybe_ci,build_args=>{},features=>{},pure_perl=>0,cpanfile_path=>'cpanfile',@_,},$class}sub env {my($self,$key)=@_;$ENV{"PERL_CPANM_" .$key}}sub maybe_ci {my$class=shift;grep$ENV{$_},qw(TRAVIS CI AUTOMATED_TESTING AUTHOR_TESTING)}sub install_type_handlers {my$self=shift;my@handlers;for my$type (qw(recommends suggests)){push@handlers,"with-$type"=>sub {my%uniq;$self->{install_types}=[grep!$uniq{$_}++,@{$self->{install_types}},$type ]};push@handlers,"without-$type"=>sub {$self->{install_types}=[grep $_ ne $type,@{$self->{install_types}}]}}@handlers}sub build_args_handlers {my$self=shift;my@handlers;for my$phase (qw(configure build test install)){push@handlers,"$phase-args=s"=>\($self->{build_args}{$phase})}@handlers}sub parse_options {my$self=shift;local@ARGV=@{$self->{argv}};push@ARGV,grep length,split /\s+/,$self->env('OPT');push@ARGV,@_;Getopt::Long::Configure("bundling");Getopt::Long::GetOptions('f|force'=>sub {$self->{skip_installed}=0;$self->{force}=1},'n|notest!'=>\$self->{notest},'test-only'=>sub {$self->{notest}=0;$self->{skip_installed}=0;$self->{test_only}=1},'S|sudo!'=>\$self->{sudo},'v|verbose'=>\$self->{verbose},'verify!'=>\$self->{verify},'q|quiet!'=>\$self->{quiet},'h|help'=>sub {$self->{action}='show_help'},'V|version'=>sub {$self->{action}='show_version'},'perl=s'=>sub {$self->diag("--perl is deprecated since it's known to be fragile in figuring out dependencies. Run `$_[1] -S cpanm` instead.\n",1);$self->{perl}=$_[1]},'l|local-lib=s'=>sub {$self->{local_lib}=$self->maybe_abs($_[1])},'L|local-lib-contained=s'=>sub {$self->{local_lib}=$self->maybe_abs($_[1]);$self->{self_contained}=1;$self->{pod2man}=undef},'self-contained!'=>\$self->{self_contained},'exclude-vendor!'=>\$self->{exclude_vendor},'mirror=s@'=>$self->{mirrors},'mirror-only!'=>\$self->{mirror_only},'mirror-index=s'=>sub {$self->{mirror_index}=$self->maybe_abs($_[1])},'M|from=s'=>sub {$self->{mirrors}=[$_[1]];$self->{mirror_only}=1},'cpanmetadb=s'=>\$self->{cpanmetadb},'cascade-search!'=>\$self->{cascade_search},'prompt!'=>\$self->{prompt},'installdeps'=>\$self->{installdeps},'skip-installed!'=>\$self->{skip_installed},'skip-satisfied!'=>\$self->{skip_satisfied},'reinstall'=>sub {$self->{skip_installed}=0},'interactive!'=>\$self->{interactive},'i|install'=>sub {$self->{cmd}='install'},'info'=>sub {$self->{cmd}='info'},'look'=>sub {$self->{cmd}='look';$self->{skip_installed}=0},'U|uninstall'=>sub {$self->{cmd}='uninstall'},'self-upgrade'=>sub {$self->{action}='self_upgrade'},'uninst-shadows!'=>\$self->{uninstall_shadows},'lwp!'=>\$self->{try_lwp},'wget!'=>\$self->{try_wget},'curl!'=>\$self->{try_curl},'auto-cleanup=s'=>\$self->{auto_cleanup},'man-pages!'=>\$self->{pod2man},'scandeps'=>\$self->{scandeps},'showdeps'=>sub {$self->{showdeps}=1;$self->{skip_installed}=0},'format=s'=>\$self->{format},'save-dists=s'=>sub {$self->{save_dists}=$self->maybe_abs($_[1])},'skip-configure!'=>\$self->{skip_configure},'dev!'=>\$self->{dev_release},'metacpan!'=>\$self->{metacpan},'report-perl-version!'=>\$self->{report_perl_version},'configure-timeout=i'=>\$self->{configure_timeout},'build-timeout=i'=>\$self->{build_timeout},'test-timeout=i'=>\$self->{test_timeout},'with-develop'=>\$self->{with_develop},'without-develop'=>sub {$self->{with_develop}=0},'with-configure'=>\$self->{with_configure},'without-configure'=>sub {$self->{with_configure}=0},'with-feature=s'=>sub {$self->{features}{$_[1]}=1},'without-feature=s'=>sub {$self->{features}{$_[1]}=0},'with-all-features'=>sub {$self->{features}{__all}=1},'pp|pureperl!'=>\$self->{pure_perl},"cpanfile=s"=>\$self->{cpanfile_path},$self->install_type_handlers,$self->build_args_handlers,);if (!@ARGV && $0 ne '-' &&!-t STDIN){push@ARGV,$self->load_argv_from_fh(\*STDIN);$self->{load_from_stdin}=1}$self->{argv}=\@ARGV}sub check_upgrade {my$self=shift;my$install_base=$ENV{PERL_LOCAL_LIB_ROOT}? $self->local_lib_target($ENV{PERL_LOCAL_LIB_ROOT}): $Config{installsitebin};if ($0 eq '-'){return}elsif ($0 !~ /^$install_base/){if ($0 =~ m!perlbrew/bin!){die <<DIE}else {die <<DIE}}}sub check_libs {my$self=shift;return if$self->{_checked}++;$self->bootstrap_local_lib}sub setup_verify {my$self=shift;my$has_modules=eval {require Module::Signature;require Digest::SHA;1};$self->{cpansign}=$self->which('cpansign');unless ($has_modules && $self->{cpansign}){warn "WARNING: Module::Signature and Digest::SHA is required for distribution verifications.\n";$self->{verify}=0}}sub parse_module_args {my($self,$module)=@_;$module =~ s/^([A-Za-z0-9_:]+)@([v\d\._]+)$/$1~== $2/;if ($module =~ /\~[v\d\._,\!<>= ]+$/){return split /\~/,$module,2}else {return$module,undef}}sub doit {my$self=shift;my$code;eval {$code=($self->_doit==0)};if (my$e=$@){warn$e;$code=1}return$code}sub _doit {my$self=shift;$self->setup_home;$self->init_tools;$self->setup_verify if$self->{verify};if (my$action=$self->{action}){$self->$action()and return 1}return$self->show_help(1)unless @{$self->{argv}}or $self->{load_from_stdin};$self->configure_mirrors;my$cwd=Cwd::cwd;my@fail;for my$module (@{$self->{argv}}){if ($module =~ s/\.pm$//i){my ($volume,$dirs,$file)=File::Spec->splitpath($module);$module=join '::',grep {$_}File::Spec->splitdir($dirs),$file}($module,my$version)=$self->parse_module_args($module);$self->chdir($cwd);if ($self->{cmd}eq 'uninstall'){$self->uninstall_module($module)or push@fail,$module}else {$self->install_module($module,0,$version)or push@fail,$module}}if ($self->{base}&& $self->{auto_cleanup}){$self->cleanup_workdirs}if ($self->{installed_dists}){my$dists=$self->{installed_dists}> 1 ? "distributions" : "distribution";$self->diag("$self->{installed_dists} $dists installed\n",1)}if ($self->{scandeps}){$self->dump_scandeps()}$self->chdir($cwd);return!@fail}sub setup_home {my$self=shift;$self->{home}=$self->env('HOME')if$self->env('HOME');unless (_writable($self->{home})){die "Can't write to cpanm home '$self->{home}': You should fix it with chown/chmod first.\n"}$self->{base}="$self->{home}/work/" .time .".$$";File::Path::mkpath([$self->{base}],0,0777);$self->{log}=File::Spec->catfile($self->{base},"build.log");my$final_log="$self->{home}/build.log";{open my$out,">$self->{log}" or die "$self->{log}: $!"}if (CAN_SYMLINK){my$build_link="$self->{home}/latest-build";unlink$build_link;symlink$self->{base},$build_link;unlink$final_log;symlink$self->{log},$final_log}else {my$log=$self->{log};my$home=$self->{home};$self->{at_exit}=sub {my$self=shift;my$temp_log="$home/build.log." .time .".$$";File::Copy::copy($log,$temp_log)&& unlink($final_log);rename($temp_log,$final_log)}}$self->chat("cpanm (App::cpanminus) $VERSION on perl $] built for $Config{archname}\n" ."Work directory is $self->{base}\n")}sub package_index_for {my ($self,$mirror)=@_;return$self->source_for($mirror)."/02packages.details.txt"}sub generate_mirror_index {my ($self,$mirror)=@_;my$file=$self->package_index_for($mirror);my$gz_file=$file .'.gz';my$index_mtime=(stat$gz_file)[9];unless (-e $file && (stat$file)[9]>= $index_mtime){$self->chat("Uncompressing index file...\n");if (eval {require Compress::Zlib}){my$gz=Compress::Zlib::gzopen($gz_file,"rb")or do {$self->diag_fail("$Compress::Zlib::gzerrno opening compressed index");return};open my$fh,'>',$file or do {$self->diag_fail("$! opening uncompressed index for write");return};my$buffer;while (my$status=$gz->gzread($buffer)){if ($status < 0){$self->diag_fail($gz->gzerror ." reading compressed index");return}print$fh $buffer}}else {if (system("gunzip -c $gz_file > $file")){$self->diag_fail("Cannot uncompress -- please install gunzip or Compress::Zlib");return}}utime$index_mtime,$index_mtime,$file}return 1}sub search_mirror_index {my ($self,$mirror,$module,$version)=@_;$self->search_mirror_index_file($self->package_index_for($mirror),$module,$version)}sub search_mirror_index_file {my($self,$file,$module,$version)=@_;open my$fh,'<',$file or return;my$found;while (<$fh>){if (m!^\Q$module\E\s+([\w\.]+)\s+(\S*)!m){$found=$self->cpan_module($module,$2,$1);last}}return$found unless$self->{cascade_search};if ($found){if ($self->satisfy_version($module,$found->{module_version},$version)){return$found}else {$self->chat("Found $module $found->{module_version} which doesn't satisfy $version.\n")}}return}sub with_version_range {my($self,$version)=@_;defined($version)&& $version =~ /(?:<|!=|==)/}sub encode_json {my($self,$data)=@_;require JSON::PP;my$json=JSON::PP::encode_json($data);$json =~ s/([^a-zA-Z0-9_\-.])/uc sprintf("%%%02x",ord($1))/eg;$json}sub version_to_query {my($self,$module,$version)=@_;require CPAN::Meta::Requirements;my$requirements=CPAN::Meta::Requirements->new;$requirements->add_string_requirement($module,$version || '0');my$req=$requirements->requirements_for_module($module);if ($req =~ s/^==\s*//){return {term=>{'module.version'=>$req },}}elsif ($req !~ /\s/){return {range=>{'module.version_numified'=>{'gte'=>$self->numify_ver_metacpan($req)}},}}else {my%ops=qw(< lt <= lte > gt >= gte);my(%range,@exclusion);my@requirements=split /,\s*/,$req;for my$r (@requirements){if ($r =~ s/^([<>]=?)\s*//){$range{$ops{$1}}=$self->numify_ver_metacpan($r)}elsif ($r =~ s/\!=\s*//){push@exclusion,$self->numify_ver_metacpan($r)}}my@filters=({range=>{'module.version_numified'=>\%range }},);if (@exclusion){push@filters,{not=>{or=>[map {+{term=>{'module.version_numified'=>$self->numify_ver_metacpan($_)}}}@exclusion ]},}}return@filters}}sub numify_ver_metacpan {my($self,$ver)=@_;$ver =~ s/_//g;version->new($ver)->numify}sub numify_ver {my($self,$ver)=@_;eval version->new($ver)->numify}sub maturity_filter {my($self,$module,$version)=@_;if ($version =~ /==/){return}elsif ($self->{dev_release}){return +{not=>{term=>{status=>'backpan' }}}}else {return ({not=>{term=>{status=>'backpan' }}},{term=>{maturity=>'released' }},)}}sub by_version {my%s=qw(latest 3 cpan 2 backpan 1);$b->{_score}<=> $a->{_score}|| $s{$b->{fields}{status}}<=> $s{$a->{fields}{status}}}sub by_first_come {$a->{fields}{date}cmp $b->{fields}{date}}sub by_date {$b->{fields}{date}cmp $a->{fields}{date}}sub find_best_match {my($self,$match,$version)=@_;return unless$match && @{$match->{hits}{hits}|| []};my@hits=$self->{dev_release}? sort {by_version || by_date}@{$match->{hits}{hits}}: sort {by_version || by_first_come}@{$match->{hits}{hits}};$hits[0]->{fields}}sub search_metacpan {my($self,$module,$version)=@_;require JSON::PP;$self->chat("Searching $module ($version) on metacpan ...\n");my$metacpan_uri='http://api.metacpan.org/v0';my@filter=$self->maturity_filter($module,$version);my$query={filtered=>{(@filter ? (filter=>{and=>\@filter }): ()),query=>{nested=>{score_mode=>'max',path=>'module',query=>{custom_score=>{metacpan_script=>"score_version_numified",query=>{constant_score=>{filter=>{and=>[{term=>{'module.authorized'=>JSON::PP::true()}},{term=>{'module.indexed'=>JSON::PP::true()}},{term=>{'module.name'=>$module }},$self->version_to_query($module,$version),]}}},}},}},}};my$module_uri="$metacpan_uri/file/_search?source=";$module_uri .= $self->encode_json({query=>$query,fields=>['date','release','author','module','status' ],});my($release,$author,$module_version);my$module_json=$self->get($module_uri);my$module_meta=eval {JSON::PP::decode_json($module_json)};my$match=$self->find_best_match($module_meta);if ($match){$release=$match->{release};$author=$match->{author};my$module_matched=(grep {$_->{name}eq $module}@{$match->{module}})[0];$module_version=$module_matched->{version}}unless ($release){$self->chat("! Could not find a release matching $module ($version) on MetaCPAN.\n");return}my$dist_uri="$metacpan_uri/release/_search?source=";$dist_uri .= $self->encode_json({filter=>{and=>[{term=>{'release.name'=>$release }},{term=>{'release.author'=>$author }},]},fields=>['download_url','stat','status' ],});my$dist_json=$self->get($dist_uri);my$dist_meta=eval {JSON::PP::decode_json($dist_json)};if ($dist_meta){$dist_meta=$dist_meta->{hits}{hits}[0]{fields}}if ($dist_meta && $dist_meta->{download_url}){(my$distfile=$dist_meta->{download_url})=~ s!.+/authors/id/!!;local$self->{mirrors}=$self->{mirrors};if ($dist_meta->{status}eq 'backpan'){$self->{mirrors}=['http://backpan.perl.org' ]}elsif ($dist_meta->{stat}{mtime}> time()-24*60*60){$self->{mirrors}=['http://cpan.metacpan.org' ]}return$self->cpan_module($module,$distfile,$module_version)}$self->diag_fail("Finding $module on metacpan failed.");return}sub search_database {my($self,$module,$version)=@_;my$found;if ($self->{dev_release}or $self->{metacpan}){$found=$self->search_metacpan($module,$version)and return$found;$found=$self->search_cpanmetadb($module,$version)and return$found}else {$found=$self->search_cpanmetadb($module,$version)and return$found;$found=$self->search_metacpan($module,$version)and return$found}}sub search_cpanmetadb {my($self,$module,$version)=@_;$self->chat("Searching $module ($version) on cpanmetadb ...\n");if ($self->with_version_range($version)){return$self->search_cpanmetadb_history($module,$version)}else {return$self->search_cpanmetadb_package($module,$version)}}sub search_cpanmetadb_package {my($self,$module,$version)=@_;require CPAN::Meta::YAML;(my$uri=$self->{cpanmetadb})=~ s{/?$}{/package/$module};my$yaml=$self->get($uri);my$meta=eval {CPAN::Meta::YAML::Load($yaml)};if ($meta && $meta->{distfile}){return$self->cpan_module($module,$meta->{distfile},$meta->{version})}$self->diag_fail("Finding $module on cpanmetadb failed.");return}sub search_cpanmetadb_history {my($self,$module,$version)=@_;(my$uri=$self->{cpanmetadb})=~ s{/?$}{/history/$module};my$content=$self->get($uri)or return;my@found;for my$line (split /\r?\n/,$content){if ($line =~ /^$module\s+(\S+)\s+(\S+)$/){push@found,{version=>$1,version_obj=>version::->parse($1),distfile=>$2,}}}return unless@found;$found[-1]->{latest}=1;my$match;for my$try (sort {$b->{version_obj}cmp $a->{version_obj}}@found){if ($self->satisfy_version($module,$try->{version_obj},$version)){local$self->{mirrors}=$self->{mirrors};unshift @{$self->{mirrors}},'http://backpan.perl.org' unless$try->{latest};return$self->cpan_module($module,$try->{distfile},$try->{version})}}$self->diag_fail("Finding $module ($version) on cpanmetadb failed.");return}sub search_module {my($self,$module,$version)=@_;if ($self->{mirror_index}){$self->mask_output(chat=>"Searching $module on mirror index $self->{mirror_index} ...\n");my$pkg=$self->search_mirror_index_file($self->{mirror_index},$module,$version);return$pkg if$pkg;unless ($self->{cascade_search}){$self->mask_output(diag_fail=>"Finding $module ($version) on mirror index $self->{mirror_index} failed.");return}}unless ($self->{mirror_only}){my$found=$self->search_database($module,$version);return$found if$found}MIRROR: for my$mirror (@{$self->{mirrors}}){$self->mask_output(chat=>"Searching $module on mirror $mirror ...\n");my$name='02packages.details.txt.gz';my$uri="$mirror/modules/$name";my$gz_file=$self->package_index_for($mirror).'.gz';unless ($self->{pkgs}{$uri}){$self->mask_output(chat=>"Downloading index file $uri ...\n");$self->mirror($uri,$gz_file);$self->generate_mirror_index($mirror)or next MIRROR;$self->{pkgs}{$uri}="!!retrieved!!"}my$pkg=$self->search_mirror_index($mirror,$module,$version);return$pkg if$pkg;$self->mask_output(diag_fail=>"Finding $module ($version) on mirror $mirror failed.")}return}sub source_for {my($self,$mirror)=@_;$mirror =~ s/[^\w\.\-]+/%/g;my$dir="$self->{home}/sources/$mirror";File::Path::mkpath([$dir ],0,0777);return$dir}sub load_argv_from_fh {my($self,$fh)=@_;my@argv;while(defined(my$line=<$fh>)){chomp$line;$line =~ s/#.+$//;$line =~ s/^\s+//;$line =~ s/\s+$//;push@argv,split ' ',$line if$line}return@argv}sub show_version {my$self=shift;print "cpanm (App::cpanminus) version $VERSION ($0)\n";print "perl version $] ($^X)\n\n";print "  \%Config:\n";for my$key (qw(archname installsitelib installsitebin installman1dir installman3dir sitearchexp sitelibexp vendorarch vendorlibexp archlibexp privlibexp)){print "    $key=$Config{$key}\n" if$Config{$key}}print "  \%ENV:\n";for my$key (grep /^PERL/,sort keys%ENV){print "    $key=$ENV{$key}\n"}print "  \@INC:\n";for my$inc (@INC){print "    $inc\n" unless ref($inc)eq 'CODE'}return 1}sub show_help {my$self=shift;if ($_[0]){print <<USAGE;return}print <<HELP;return 1}sub _writable {my$dir=shift;my@dir=File::Spec->splitdir($dir);while (@dir){$dir=File::Spec->catdir(@dir);if (-e $dir){return -w _}pop@dir}return}sub maybe_abs {my($self,$lib)=@_;if ($lib eq '_' or $lib =~ /^~/ or File::Spec->file_name_is_absolute($lib)){return$lib}else {return File::Spec->canonpath(File::Spec->catdir(Cwd::cwd(),$lib))}}sub local_lib_target {my($self,$root)=@_;(grep {$_ ne ''}split /\Q$Config{path_sep}/,$root)[0]}sub bootstrap_local_lib {my$self=shift;if ($self->{local_lib}){return$self->setup_local_lib($self->{local_lib})}if ($ENV{PERL_LOCAL_LIB_ROOT}&& $ENV{PERL_MM_OPT}){return$self->setup_local_lib($self->local_lib_target($ENV{PERL_LOCAL_LIB_ROOT}),1)}return if$self->{sudo}or (_writable($Config{installsitelib})and _writable($Config{installsitebin}));if ($ENV{PERL_MM_OPT}and ($ENV{MODULEBUILDRC}or $ENV{PERL_MB_OPT})){return}$self->setup_local_lib;$self->diag(<<DIAG,1);sleep 2}sub upgrade_toolchain {my($self,$config_deps)=@_;my%deps=map {$_->module=>$_}@$config_deps;my$reqs=CPAN::Meta::Requirements->from_string_hash({'Module::Build'=>'0.38','ExtUtils::MakeMaker'=>'6.58','ExtUtils::Install'=>'1.46',});if ($deps{"ExtUtils::MakeMaker"}){$deps{"ExtUtils::MakeMaker"}->merge_with($reqs)}elsif ($deps{"Module::Build"}){$deps{"Module::Build"}->merge_with($reqs);$deps{"ExtUtils::Install"}||= App::cpanminus::Dependency->new("ExtUtils::Install",0,'configure');$deps{"ExtUtils::Install"}->merge_with($reqs)}@$config_deps=values%deps}sub _core_only_inc {my($self,$base)=@_;require local::lib;(local::lib->resolve_path(local::lib->install_base_arch_path($base)),local::lib->resolve_path(local::lib->install_base_perl_path($base)),(!$self->{exclude_vendor}? grep {$_}@Config{qw(vendorarch vendorlibexp)}: ()),@Config{qw(archlibexp privlibexp)},)}sub _diff {my($self,$old,$new)=@_;my@diff;my%old=map {$_=>1}@$old;for my$n (@$new){push@diff,$n unless exists$old{$n}}@diff}sub _setup_local_lib_env {my($self,$base)=@_;$self->diag(<<WARN,1)if$base =~ /\s/;local$SIG{__WARN__}=sub {};local::lib->setup_env_hash_for($base,0)}sub setup_local_lib {my($self,$base,$no_env)=@_;$base=undef if$base eq '_';require local::lib;{local $0='cpanm';$base ||= "~/perl5";$base=local::lib->resolve_path($base);if ($self->{self_contained}){my@inc=$self->_core_only_inc($base);$self->{search_inc}=[@inc ]}else {$self->{search_inc}=[local::lib->install_base_arch_path($base),local::lib->install_base_perl_path($base),@INC,]}$self->_setup_local_lib_env($base)unless$no_env;$self->{local_lib}=$base}}sub prompt_bool {my($self,$mess,$def)=@_;my$val=$self->prompt($mess,$def);return lc$val eq 'y'}sub prompt {my($self,$mess,$def)=@_;my$isa_tty=-t STDIN && (-t STDOUT ||!(-f STDOUT || -c STDOUT));my$dispdef=defined$def ? "[$def] " : " ";$def=defined$def ? $def : "";if (!$self->{prompt}|| (!$isa_tty && eof STDIN)){return$def}local $|=1;local $\;my$ans;eval {local$SIG{ALRM}=sub {undef$ans;die "alarm\n"};print STDOUT "$mess $dispdef";alarm$self->{prompt_timeout}if$self->{prompt_timeout};$ans=<STDIN>;alarm 0};if (defined$ans){chomp$ans}else {print STDOUT "\n"}return (!defined$ans || $ans eq '')? $def : $ans}sub diag_ok {my($self,$msg)=@_;chomp$msg;$msg ||= "OK";if ($self->{in_progress}){$self->_diag("$msg\n");$self->{in_progress}=0}$self->log("-> $msg\n")}sub diag_fail {my($self,$msg,$always)=@_;chomp$msg;if ($self->{in_progress}){$self->_diag("FAIL\n");$self->{in_progress}=0}if ($msg){$self->_diag("! $msg\n",$always,1);$self->log("-> FAIL $msg\n")}}sub diag_progress {my($self,$msg)=@_;chomp$msg;$self->{in_progress}=1;$self->_diag("$msg ... ");$self->log("$msg\n")}sub _diag {my($self,$msg,$always,$error)=@_;my$fh=$error ? *STDERR : *STDOUT;print {$fh}$msg if$always or $self->{verbose}or!$self->{quiet}}sub diag {my($self,$msg,$always)=@_;$self->_diag($msg,$always);$self->log($msg)}sub chat {my$self=shift;print STDERR @_ if$self->{verbose};$self->log(@_)}sub mask_output {my$self=shift;my$method=shift;$self->$method($self->mask_uri_passwords(@_))}sub log {my$self=shift;open my$out,">>$self->{log}";print$out @_}sub run {my($self,$cmd)=@_;if (WIN32){$cmd=$self->shell_quote(@$cmd)if ref$cmd eq 'ARRAY';unless ($self->{verbose}){$cmd .= " >> " .$self->shell_quote($self->{log})." 2>&1"}!system$cmd}else {my$pid=fork;if ($pid){waitpid$pid,0;return!$?}else {$self->run_exec($cmd)}}}sub run_exec {my($self,$cmd)=@_;if (ref$cmd eq 'ARRAY'){unless ($self->{verbose}){open my$logfh,">>",$self->{log};open STDERR,'>&',$logfh;open STDOUT,'>&',$logfh;close$logfh}exec @$cmd}else {unless ($self->{verbose}){$cmd .= " >> " .$self->shell_quote($self->{log})." 2>&1"}exec$cmd}}sub run_timeout {my($self,$cmd,$timeout)=@_;return$self->run($cmd)if WIN32 || $self->{verbose}||!$timeout;my$pid=fork;if ($pid){eval {local$SIG{ALRM}=sub {die "alarm\n"};alarm$timeout;waitpid$pid,0;alarm 0};if ($@ && $@ eq "alarm\n"){$self->diag_fail("Timed out (> ${timeout}s). Use --verbose to retry.");local$SIG{TERM}='IGNORE';kill TERM=>0;waitpid$pid,0;return}return!$?}elsif ($pid==0){$self->run_exec($cmd)}else {$self->chat("! fork failed: falling back to system()\n");$self->run($cmd)}}sub append_args {my($self,$cmd,$phase)=@_;if (my$args=$self->{build_args}{$phase}){$cmd=join ' ',$self->shell_quote(@$cmd),$args}$cmd}sub configure {my($self,$cmd,$depth)=@_;local$ENV{PERL5_CPAN_IS_RUNNING}=local$ENV{PERL5_CPANPLUS_IS_RUNNING}=$$;local$ENV{PERL5_CPANM_IS_RUNNING}=$$;my$use_default=!$self->{interactive};local$ENV{PERL_MM_USE_DEFAULT}=$use_default;local$ENV{PERL_MM_OPT}=$ENV{PERL_MM_OPT};local$ENV{PERL_MB_OPT}=$ENV{PERL_MB_OPT};unless ($self->{pod2man}){$ENV{PERL_MM_OPT}.= " INSTALLMAN1DIR=none INSTALLMAN3DIR=none";$ENV{PERL_MB_OPT}.= " --config installman1dir= --config installsiteman1dir= --config installman3dir= --config installsiteman3dir="}if ($self->{pure_perl}){$ENV{PERL_MM_OPT}.= " PUREPERL_ONLY=1";$ENV{PERL_MB_OPT}.= " --pureperl-only"}local$ENV{PERL_USE_UNSAFE_INC}=1 unless exists$ENV{PERL_USE_UNSAFE_INC};$cmd=$self->append_args($cmd,'configure')if$depth==0;local$self->{verbose}=$self->{verbose}|| $self->{interactive};$self->run_timeout($cmd,$self->{configure_timeout})}sub build {my($self,$cmd,$distname,$depth)=@_;local$ENV{PERL_MM_USE_DEFAULT}=!$self->{interactive};local$ENV{PERL_USE_UNSAFE_INC}=1 unless exists$ENV{PERL_USE_UNSAFE_INC};$cmd=$self->append_args($cmd,'build')if$depth==0;return 1 if$self->run_timeout($cmd,$self->{build_timeout});while (1){my$ans=lc$self->prompt("Building $distname failed.\nYou can s)kip, r)etry, e)xamine build log, or l)ook ?","s");return if$ans eq 's';return$self->build($cmd,$distname,$depth)if$ans eq 'r';$self->show_build_log if$ans eq 'e';$self->look if$ans eq 'l'}}sub test {my($self,$cmd,$distname,$depth)=@_;return 1 if$self->{notest};local$ENV{PERL_MM_USE_DEFAULT}=!$self->{interactive};local$ENV{NONINTERACTIVE_TESTING}=!$self->{interactive};$cmd=$self->append_args($cmd,'test')if$depth==0;local$ENV{PERL_USE_UNSAFE_INC}=1 unless exists$ENV{PERL_USE_UNSAFE_INC};return 1 if$self->run_timeout($cmd,$self->{test_timeout});if ($self->{force}){$self->diag_fail("Testing $distname failed but installing it anyway.");return 1}else {$self->diag_fail;while (1){my$ans=lc$self->prompt("Testing $distname failed.\nYou can s)kip, r)etry, f)orce install, e)xamine build log, or l)ook ?","s");return if$ans eq 's';return$self->test($cmd,$distname,$depth)if$ans eq 'r';return 1 if$ans eq 'f';$self->show_build_log if$ans eq 'e';$self->look if$ans eq 'l'}}}sub install {my($self,$cmd,$uninst_opts,$depth)=@_;if ($depth==0 && $self->{test_only}){return 1}local$ENV{PERL_USE_UNSAFE_INC}=1 unless exists$ENV{PERL_USE_UNSAFE_INC};if ($self->{sudo}){unshift @$cmd,"sudo"}if ($self->{uninstall_shadows}&&!$ENV{PERL_MM_OPT}){push @$cmd,@$uninst_opts}$cmd=$self->append_args($cmd,'install')if$depth==0;$self->run($cmd)}sub look {my$self=shift;my$shell=$ENV{SHELL};$shell ||= $ENV{COMSPEC}if WIN32;if ($shell){my$cwd=Cwd::cwd;$self->diag("Entering $cwd with $shell\n");system$shell}else {$self->diag_fail("You don't seem to have a SHELL :/")}}sub show_build_log {my$self=shift;my@pagers=($ENV{PAGER},(WIN32 ? (): ('less')),'more');my$pager;while (@pagers){$pager=shift@pagers;next unless$pager;$pager=$self->which($pager);next unless$pager;last}if ($pager){system("$pager < $self->{log}")}else {$self->diag_fail("You don't seem to have a PAGER :/")}}sub chdir {my$self=shift;Cwd::chdir(File::Spec->canonpath($_[0]))or die "$_[0]: $!"}sub configure_mirrors {my$self=shift;unless (@{$self->{mirrors}}){$self->{mirrors}=['http://www.cpan.org' ]}for (@{$self->{mirrors}}){s!^/!file:///!;s!/$!!}}sub self_upgrade {my$self=shift;$self->check_upgrade;$self->{argv}=['App::cpanminus' ];return}sub install_module {my($self,$module,$depth,$version)=@_;$self->check_libs;if ($self->{seen}{$module}++){$self->chat("Already tried $module. Skipping.\n");return 1}if ($self->{skip_satisfied}){my($ok,$local)=$self->check_module($module,$version || 0);if ($ok){$self->diag("You have $module ($local)\n",1);return 1}}my$dist=$self->resolve_name($module,$version);unless ($dist){my$what=$module .($version ? " ($version)" : "");$self->diag_fail("Couldn't find module or a distribution $what",1);return}if ($dist->{distvname}&& $self->{seen}{$dist->{distvname}}++){$self->chat("Already tried $dist->{distvname}. Skipping.\n");return 1}if ($self->{cmd}eq 'info'){print$self->format_dist($dist),"\n";return 1}$dist->{depth}=$depth;if ($dist->{module}){unless ($self->satisfy_version($dist->{module},$dist->{module_version},$version)){$self->diag("Found $dist->{module} $dist->{module_version} which doesn't satisfy $version.\n",1);return}my$cmp=$version ? "==" : "";my$requirement=$dist->{module_version}? "$cmp$dist->{module_version}" : 0;my($ok,$local)=$self->check_module($dist->{module},$requirement);if ($self->{skip_installed}&& $ok){$self->diag("$dist->{module} is up to date. ($local)\n",1);return 1}}if ($dist->{dist}eq 'perl'){$self->diag("skipping $dist->{pathname}\n");return 1}$self->diag("--> Working on $module\n");$dist->{dir}||= $self->fetch_module($dist);unless ($dist->{dir}){$self->diag_fail("Failed to fetch distribution $dist->{distvname}",1);return}$self->chat("Entering $dist->{dir}\n");$self->chdir($self->{base});$self->chdir($dist->{dir});if ($self->{cmd}eq 'look'){$self->look;return 1}return$self->build_stuff($module,$dist,$depth)}sub uninstall_search_path {my$self=shift;$self->{local_lib}? (local::lib->install_base_arch_path($self->{local_lib}),local::lib->install_base_perl_path($self->{local_lib})): @Config{qw(installsitearch installsitelib)}}sub uninstall_module {my ($self,$module)=@_;$self->check_libs;my@inc=$self->uninstall_search_path;my($metadata,$packlist)=$self->packlists_containing($module,\@inc);unless ($packlist){$self->diag_fail(<<DIAG,1);return}my@uninst_files=$self->uninstall_target($metadata,$packlist);$self->ask_permission($module,\@uninst_files)or return;$self->uninstall_files(@uninst_files,$packlist);$self->diag("Successfully uninstalled $module\n",1);return 1}sub packlists_containing {my($self,$module,$inc)=@_;require Module::Metadata;my$metadata=Module::Metadata->new_from_module($module,inc=>$inc)or return;my$packlist;my$wanted=sub {return unless $_ eq '.packlist' && -f $_;for my$file ($self->unpack_packlist($File::Find::name)){$packlist ||= $File::Find::name if$file eq $metadata->filename}};{require File::pushd;my$pushd=File::pushd::pushd();my@search=grep -d $_,map File::Spec->catdir($_,'auto'),@$inc;File::Find::find($wanted,@search)}return$metadata,$packlist}sub uninstall_target {my($self,$metadata,$packlist)=@_;if ($self->has_shadow_install($metadata)or $self->{local_lib}){grep$self->should_unlink($_),$self->unpack_packlist($packlist)}else {$self->unpack_packlist($packlist)}}sub has_shadow_install {my($self,$metadata)=@_;my@shadow=grep defined,map Module::Metadata->new_from_module($metadata->name,inc=>[$_]),@INC;@shadow >= 2}sub should_unlink {my($self,$file)=@_;if ($self->{local_lib}){$file =~ /^\Q$self->{local_lib}\E/}else {!(grep$file =~ /^\Q$_\E/,@Config{qw(installbin installscript installman1dir installman3dir)})}}sub ask_permission {my ($self,$module,$files)=@_;$self->diag("$module contains the following files:\n\n");for my$file (@$files){$self->diag("  $file\n")}$self->diag("\n");return 'force uninstall' if$self->{force};local$self->{prompt}=1;return$self->prompt_bool("Are you sure you want to uninstall $module?",'y')}sub unpack_packlist {my ($self,$packlist)=@_;open my$fh,'<',$packlist or die "$packlist: $!";map {chomp;$_}<$fh>}sub uninstall_files {my ($self,@files)=@_;$self->diag("\n");for my$file (@files){$self->diag("Unlink: $file\n");unlink$file or $self->diag_fail("$!: $file")}$self->diag("\n");return 1}sub format_dist {my($self,$dist)=@_;return "$dist->{cpanid}/$dist->{filename}"}sub trim {local $_=shift;tr/\n/ /d;s/^\s*|\s*$//g;$_}sub fetch_module {my($self,$dist)=@_;$self->chdir($self->{base});for my$uri (@{$dist->{uris}}){$self->mask_output(diag_progress=>"Fetching $uri");my$filename=$dist->{filename}|| $uri;my$name=File::Basename::basename($filename);my$cancelled;my$fetch=sub {my$file;eval {local$SIG{INT}=sub {$cancelled=1;die "SIGINT\n"};$self->mirror($uri,$name);$file=$name if -e $name};$self->diag("ERROR: " .trim("$@")."\n",1)if $@ && $@ ne "SIGINT\n";return$file};my($try,$file);while ($try++ < 3){$file=$fetch->();last if$cancelled or $file;$self->mask_output(diag_fail=>"Download $uri failed. Retrying ... ")}if ($cancelled){$self->diag_fail("Download cancelled.");return}unless ($file){$self->mask_output(diag_fail=>"Failed to download $uri");next}$self->diag_ok;$dist->{local_path}=File::Spec->rel2abs($name);my$dir=$self->unpack($file,$uri,$dist);next unless$dir;if (my$save=$self->{save_dists}){my$path=$dist->{pathname}? "$save/authors/id/$dist->{pathname}" : "$save/vendor/$file";$self->chat("Copying $name to $path\n");File::Path::mkpath([File::Basename::dirname($path)],0,0777);File::Copy::copy($file,$path)or warn $!}return$dist,$dir}}sub unpack {my($self,$file,$uri,$dist)=@_;if ($self->{verify}){$self->verify_archive($file,$uri,$dist)or return}$self->chat("Unpacking $file\n");my$dir=$file =~ /\.zip/i ? $self->unzip($file): $self->untar($file);unless ($dir){$self->diag_fail("Failed to unpack $file: no directory")}return$dir}sub verify_checksums_signature {my($self,$chk_file)=@_;require Module::Signature;$self->chat("Verifying the signature of CHECKSUMS\n");my$rv=eval {local$SIG{__WARN__}=sub {};my$v=Module::Signature::_verify($chk_file);$v==Module::Signature::SIGNATURE_OK()};if ($rv){$self->chat("Verified OK!\n")}else {$self->diag_fail("Verifying CHECKSUMS signature failed: $rv\n");return}return 1}sub verify_archive {my($self,$file,$uri,$dist)=@_;unless ($dist->{cpanid}){$self->chat("Archive '$file' does not seem to be from PAUSE. Skip verification.\n");return 1}(my$mirror=$uri)=~ s!/authors/id.*$!!;(my$chksum_uri=$uri)=~ s!/[^/]*$!/CHECKSUMS!;my$chk_file=$self->source_for($mirror)."/$dist->{cpanid}.CHECKSUMS";$self->mask_output(diag_progress=>"Fetching $chksum_uri");$self->mirror($chksum_uri,$chk_file);unless (-e $chk_file){$self->diag_fail("Fetching $chksum_uri failed.\n");return}$self->diag_ok;$self->verify_checksums_signature($chk_file)or return;$self->verify_checksum($file,$chk_file)}sub verify_checksum {my($self,$file,$chk_file)=@_;$self->chat("Verifying the SHA1 for $file\n");open my$fh,"<$chk_file" or die "$chk_file: $!";my$data=join '',<$fh>;$data =~ s/\015?\012/\n/g;require Safe;my$chksum=Safe->new->reval($data);if (!ref$chksum or ref$chksum ne 'HASH'){$self->diag_fail("! Checksum file downloaded from $chk_file is broken.\n");return}if (my$sha=$chksum->{$file}{sha256}){my$hex=$self->sha1_for($file);if ($hex eq $sha){$self->chat("Checksum for $file: Verified!\n")}else {$self->diag_fail("Checksum mismatch for $file\n");return}}else {$self->chat("Checksum for $file not found in CHECKSUMS.\n");return}}sub sha1_for {my($self,$file)=@_;require Digest::SHA;open my$fh,"<",$file or die "$file: $!";my$dg=Digest::SHA->new(256);my($data);while (read($fh,$data,4096)){$dg->add($data)}return$dg->hexdigest}sub verify_signature {my($self,$dist)=@_;$self->diag_progress("Verifying the SIGNATURE file");my$out=`$self->{cpansign} -v --skip 2>&1`;$self->log($out);if ($out =~ /Signature verified OK/){$self->diag_ok("Verified OK");return 1}else {$self->diag_fail("SIGNATURE verificaion for $dist->{filename} failed\n");return}}sub resolve_name {my($self,$module,$version)=@_;if ($module =~ /(?:^git:|\.git(?:@.+)?$)/){return$self->git_uri($module)}if ($module =~ /^(ftp|https?|file):/){if ($module =~ m!authors/id/(.*)!){return$self->cpan_dist($1,$module)}else {return {uris=>[$module ]}}}if ($module =~ m!^[\./]! && -d $module){return {source=>'local',dir=>Cwd::abs_path($module),}}if (-f $module){return {source=>'local',uris=>["file://" .Cwd::abs_path($module)],}}if ($module =~ s!^cpan:///distfile/!!){return$self->cpan_dist($module)}if ($module =~ m!^(?:[A-Z]/[A-Z]{2}/)?([A-Z]{2}[\-A-Z0-9]*/.*)$!){return$self->cpan_dist($1)}return$self->search_module($module,$version)}sub cpan_module {my($self,$module,$dist,$version)=@_;my$dist=$self->cpan_dist($dist);$dist->{module}=$module;$dist->{module_version}=$version if$version && $version ne 'undef';return$dist}sub cpan_dist {my($self,$dist,$url)=@_;$dist =~ s!^([A-Z]{2})!substr($1,0,1)."/".substr($1,0,2)."/".$1!e;require CPAN::DistnameInfo;my$d=CPAN::DistnameInfo->new($dist);if ($url){$url=[$url ]unless ref$url eq 'ARRAY'}else {my$id=$d->cpanid;my$fn=substr($id,0,1)."/" .substr($id,0,2)."/" .$id ."/" .$d->filename;my@mirrors=@{$self->{mirrors}};my@urls=map "$_/authors/id/$fn",@mirrors;$url=\@urls,}return {$d->properties,source=>'cpan',uris=>$url,}}sub git_uri {my ($self,$uri)=@_;($uri,my$commitish)=split /(?<=\.git)@/i,$uri,2;my$dir=File::Temp::tempdir(CLEANUP=>1);$self->mask_output(diag_progress=>"Cloning $uri");$self->run(['git','clone',$uri,$dir ]);unless (-e "$dir/.git"){$self->diag_fail("Failed cloning git repository $uri",1);return}if ($commitish){require File::pushd;my$dir=File::pushd::pushd($dir);unless ($self->run(['git','checkout',$commitish ])){$self->diag_fail("Failed to checkout '$commitish' in git repository $uri\n");return}}$self->diag_ok;return {source=>'local',dir=>$dir,}}sub setup_module_build_patch {my$self=shift;open my$out,">$self->{base}/ModuleBuildSkipMan.pm" or die $!;print$out <<EOF}sub core_version_for {my($self,$module)=@_;require Module::CoreList;unless (exists$Module::CoreList::version{$]+0}){die sprintf("Module::CoreList %s (loaded from %s) doesn't seem to have entries for perl $]. " ."You're strongly recommended to upgrade Module::CoreList from CPAN.\n",$Module::CoreList::VERSION,$INC{"Module/CoreList.pm"})}unless (exists$Module::CoreList::version{$]+0}{$module}){return -1}return$Module::CoreList::version{$]+0}{$module}}sub search_inc {my$self=shift;$self->{search_inc}||= do {if (defined$::Bin){[grep!/^\Q$::Bin\E\/..\/(?:fat)?lib$/,@INC]}else {[@INC]}}}sub check_module {my($self,$mod,$want_ver)=@_;require Module::Metadata;my$meta=Module::Metadata->new_from_module($mod,inc=>$self->search_inc)or return 0,undef;my$version=$meta->version;if ($self->{self_contained}&& $self->loaded_from_perl_lib($meta)){$version=$self->core_version_for($mod);return 0,undef if$version && $version==-1}$self->{local_versions}{$mod}=$version;if ($self->is_deprecated($meta)){return 0,$version}elsif ($self->satisfy_version($mod,$version,$want_ver)){return 1,($version || 'undef')}else {return 0,$version}}sub satisfy_version {my($self,$mod,$version,$want_ver)=@_;$want_ver='0' unless defined($want_ver)&& length($want_ver);require CPAN::Meta::Requirements;my$requirements=CPAN::Meta::Requirements->new;$requirements->add_string_requirement($mod,$want_ver);$requirements->accepts_module($mod,$version)}sub unsatisfy_how {my($self,$ver,$want_ver)=@_;if ($want_ver =~ /^[v0-9\.\_]+$/){return "$ver < $want_ver"}else {return "$ver doesn't satisfy $want_ver"}}sub is_deprecated {my($self,$meta)=@_;my$deprecated=eval {require Module::CoreList;Module::CoreList::is_deprecated($meta->{module})};return$deprecated && $self->loaded_from_perl_lib($meta)}sub loaded_from_perl_lib {my($self,$meta)=@_;require Config;my@dirs=qw(archlibexp privlibexp);if ($self->{self_contained}&&!$self->{exclude_vendor}&& $Config{vendorarch}){unshift@dirs,qw(vendorarch vendorlibexp)}for my$dir (@dirs){my$confdir=$Config{$dir};if ($confdir eq substr($meta->filename,0,length($confdir))){return 1}}return}sub should_install {my($self,$mod,$ver)=@_;$self->chat("Checking if you have $mod $ver ... ");my($ok,$local)=$self->check_module($mod,$ver);if ($ok){$self->chat("Yes ($local)\n")}elsif ($local){$self->chat("No (" .$self->unsatisfy_how($local,$ver).")\n")}else {$self->chat("No\n")}return$mod unless$ok;return}sub check_perl_version {my($self,$version)=@_;require CPAN::Meta::Requirements;my$req=CPAN::Meta::Requirements->from_string_hash({perl=>$version });$req->accepts_module(perl=>$])}sub install_deps {my($self,$dir,$depth,@deps)=@_;my(@install,%seen,@fail);for my$dep (@deps){next if$seen{$dep->module};if ($dep->module eq 'perl'){if ($dep->is_requirement &&!$self->check_perl_version($dep->version)){$self->diag("Needs perl @{[$dep->version]}, you have $]\n");push@fail,'perl'}}elsif ($self->should_install($dep->module,$dep->version)){push@install,$dep;$seen{$dep->module}=1}}if (@install){$self->diag("==> Found dependencies: " .join(", ",map $_->module,@install)."\n")}for my$dep (@install){$self->install_module($dep->module,$depth + 1,$dep->version)}$self->chdir($self->{base});$self->chdir($dir)if$dir;if ($self->{scandeps}){return 1}my@not_ok=$self->unsatisfied_deps(@deps);if (@not_ok){return 0,\@not_ok}else {return 1}}sub unsatisfied_deps {my($self,@deps)=@_;require CPAN::Meta::Check;require CPAN::Meta::Requirements;my$reqs=CPAN::Meta::Requirements->new;for my$dep (grep $_->is_requirement,@deps){$reqs->add_string_requirement($dep->module=>$dep->requires_version || '0')}my$ret=CPAN::Meta::Check::check_requirements($reqs,'requires',$self->{search_inc});grep defined,values %$ret}sub install_deps_bailout {my($self,$target,$dir,$depth,@deps)=@_;my($ok,$fail)=$self->install_deps($dir,$depth,@deps);if (!$ok){$self->diag_fail("Installing the dependencies failed: " .join(", ",@$fail),1);unless ($self->prompt_bool("Do you want to continue building $target anyway?","n")){$self->diag_fail("Bailing out the installation for $target.",1);return}}return 1}sub build_stuff {my($self,$stuff,$dist,$depth)=@_;if ($self->{verify}&& -e 'SIGNATURE'){$self->verify_signature($dist)or return}require CPAN::Meta;my($meta_file)=grep -f,qw(META.json META.yml);if ($meta_file){$self->chat("Checking configure dependencies from $meta_file\n");$dist->{cpanmeta}=eval {CPAN::Meta->load_file($meta_file)}}elsif ($dist->{dist}&& $dist->{version}){$self->chat("META.yml/json not found. Creating skeleton for it.\n");$dist->{cpanmeta}=CPAN::Meta->new({name=>$dist->{dist},version=>$dist->{version}})}$dist->{meta}=$dist->{cpanmeta}? $dist->{cpanmeta}->as_struct : {};my@config_deps;if ($dist->{cpanmeta}){push@config_deps,App::cpanminus::Dependency->from_prereqs($dist->{cpanmeta}->effective_prereqs,['configure'],$self->{install_types},)}if (-e 'Build.PL' &&!$self->should_use_mm($dist->{dist})&&!@config_deps){push@config_deps,App::cpanminus::Dependency->from_versions({'Module::Build'=>'0.38' },'configure',)}$self->merge_with_cpanfile($dist,\@config_deps);$self->upgrade_toolchain(\@config_deps);my$target=$dist->{meta}{name}? "$dist->{meta}{name}-$dist->{meta}{version}" : $dist->{dir};{$self->install_deps_bailout($target,$dist->{dir},$depth,@config_deps)or return}$self->diag_progress("Configuring $target");my$configure_state=$self->configure_this($dist,$depth);$self->diag_ok($configure_state->{configured_ok}? "OK" : "N/A");if ($dist->{cpanmeta}&& $dist->{source}eq 'cpan'){$dist->{provides}=$dist->{cpanmeta}{provides}|| $self->extract_packages($dist->{cpanmeta},".")}my$root_target=(($self->{installdeps}or $self->{showdeps})and $depth==0);$dist->{want_phases}=$self->{notest}&&!$root_target ? [qw(build runtime)]: [qw(build test runtime)];push @{$dist->{want_phases}},'develop' if$self->{with_develop}&& $depth==0;push @{$dist->{want_phases}},'configure' if$self->{with_configure}&& $depth==0;my@deps=$self->find_prereqs($dist);my$module_name=$self->find_module_name($configure_state)|| $dist->{meta}{name};$module_name =~ s/-/::/g;if ($self->{showdeps}){for my$dep (@config_deps,@deps){print$dep->module,($dep->version ? ("~".$dep->version): ""),"\n"}return 1}my$distname=$dist->{meta}{name}? "$dist->{meta}{name}-$dist->{meta}{version}" : $stuff;my$walkup;if ($self->{scandeps}){$walkup=$self->scandeps_append_child($dist)}$self->install_deps_bailout($distname,$dist->{dir},$depth,@deps)or return;if ($self->{scandeps}){unless ($configure_state->{configured_ok}){my$diag=<<DIAG;if (@config_deps){my@tree=@{$self->{scandeps_tree}};$diag .= "!\n" .join("",map "! * $_->[0]{module}\n",@tree[0..$#tree-1])if@tree}$self->diag("!\n$diag!\n",1)}$walkup->();return 1}if ($self->{installdeps}&& $depth==0){if ($configure_state->{configured_ok}){$self->diag("<== Installed dependencies for $stuff. Finishing.\n");return 1}else {$self->diag("! Configuring $distname failed. See $self->{log} for details.\n",1);return}}my$installed;if ($configure_state->{use_module_build}&& -e 'Build' && -f _){$self->diag_progress("Building " .($self->{notest}? "" : "and testing ").$distname);$self->build([$self->{perl},"./Build" ],$distname,$depth)&& $self->test([$self->{perl},"./Build","test" ],$distname,$depth)&& $self->install([$self->{perl},"./Build","install" ],["--uninst",1 ],$depth)&& $installed++}elsif ($self->{make}&& -e 'Makefile'){$self->diag_progress("Building " .($self->{notest}? "" : "and testing ").$distname);$self->build([$self->{make}],$distname,$depth)&& $self->test([$self->{make},"test" ],$distname,$depth)&& $self->install([$self->{make},"install" ],["UNINST=1" ],$depth)&& $installed++}else {my$why;my$configure_failed=$configure_state->{configured}&&!$configure_state->{configured_ok};if ($configure_failed){$why="Configure failed for $distname."}elsif ($self->{make}){$why="The distribution doesn't have a proper Makefile.PL/Build.PL"}else {$why="Can't configure the distribution. You probably need to have 'make'."}$self->diag_fail("$why See $self->{log} for details.",1);return}if ($installed && $self->{test_only}){$self->diag_ok;$self->diag("Successfully tested $distname\n",1)}elsif ($installed){my$local=$self->{local_versions}{$dist->{module}|| ''};my$version=$dist->{module_version}|| $dist->{meta}{version}|| $dist->{version};my$reinstall=$local && ($local eq $version);my$action=$local &&!$reinstall ? $self->numify_ver($version)< $self->numify_ver($local)? "downgraded" : "upgraded" : undef;my$how=$reinstall ? "reinstalled $distname" : $local ? "installed $distname ($action from $local)" : "installed $distname" ;my$msg="Successfully $how";$self->diag_ok;$self->diag("$msg\n",1);$self->{installed_dists}++;$self->save_meta($stuff,$dist,$module_name,\@config_deps,\@deps);return 1}else {my$what=$self->{test_only}? "Testing" : "Installing";$self->diag_fail("$what $stuff failed. See $self->{log} for details. Retry with --force to force install it.",1);return}}sub perl_requirements {my($self,@requires)=@_;my@perl;for my$requires (grep defined,@requires){if (exists$requires->{perl}){push@perl,App::cpanminus::Dependency->new(perl=>$requires->{perl})}}return@perl}sub should_use_mm {my($self,$dist)=@_;my%should_use_mm=map {$_=>1}qw(version ExtUtils-ParseXS ExtUtils-Install ExtUtils-Manifest);$should_use_mm{$dist}}sub configure_this {my($self,$dist,$depth)=@_;if (-e $self->{cpanfile_path}&& $self->{installdeps}&& $depth==0){require Module::CPANfile;$dist->{cpanfile}=eval {Module::CPANfile->load($self->{cpanfile_path})};$self->diag_fail($@,1)if $@;return {configured=>1,configured_ok=>!!$dist->{cpanfile},use_module_build=>0,}}if ($self->{skip_configure}){my$eumm=-e 'Makefile';my$mb=-e 'Build' && -f _;return {configured=>1,configured_ok=>$eumm || $mb,use_module_build=>$mb,}}my$state={};my$try_eumm=sub {if (-e 'Makefile.PL'){$self->chat("Running Makefile.PL\n");if ($self->configure([$self->{perl},"Makefile.PL" ],$depth)){$state->{configured_ok}=-e 'Makefile'}$state->{configured}++}};my$try_mb=sub {if (-e 'Build.PL'){$self->chat("Running Build.PL\n");if ($self->configure([$self->{perl},"Build.PL" ],$depth)){$state->{configured_ok}=-e 'Build' && -f _}$state->{use_module_build}++;$state->{configured}++}};my@try;if ($dist->{dist}&& $self->should_use_mm($dist->{dist})){@try=($try_eumm,$try_mb)}else {@try=($try_mb,$try_eumm)}for my$try (@try){$try->();last if$state->{configured_ok}}unless ($state->{configured_ok}){while (1){my$ans=lc$self->prompt("Configuring $dist->{dist} failed.\nYou can s)kip, r)etry, e)xamine build log, or l)ook ?","s");last if$ans eq 's';return$self->configure_this($dist,$depth)if$ans eq 'r';$self->show_build_log if$ans eq 'e';$self->look if$ans eq 'l'}}return$state}sub find_module_name {my($self,$state)=@_;return unless$state->{configured_ok};if ($state->{use_module_build}&& -e "_build/build_params"){my$params=do {open my$in,"_build/build_params";$self->safe_eval(join "",<$in>)};return eval {$params->[2]{module_name}}|| undef}elsif (-e "Makefile"){open my$mf,"Makefile";while (<$mf>){if (/^\#\s+NAME\s+=>\s+(.*)/){return$self->safe_eval($1)}}}return}sub list_files {my$self=shift;if (-e 'MANIFEST'){require ExtUtils::Manifest;my$manifest=eval {ExtUtils::Manifest::manifind()}|| {};return sort {lc$a cmp lc$b}keys %$manifest}else {require File::Find;my@files;my$finder=sub {my$name=$File::Find::name;$name =~ s!\.[/\\]!!;push@files,$name};File::Find::find($finder,".");return sort {lc$a cmp lc$b}@files}}sub extract_packages {my($self,$meta,$dir)=@_;my$try=sub {my$file=shift;return 0 if$file =~ m!^(?:x?t|inc|local|perl5|fatlib|_build)/!;return 1 unless$meta->{no_index};return 0 if grep {$file =~ m!^$_/!}@{$meta->{no_index}{directory}|| []};return 0 if grep {$file eq $_}@{$meta->{no_index}{file}|| []};return 1};require Parse::PMFile;my@files=grep {/\.pm(?:\.PL)?$/ && $try->($_)}$self->list_files;my$provides={};for my$file (@files){my$parser=Parse::PMFile->new($meta,{UNSAFE=>1,ALLOW_DEV_VERSION=>1 });my$packages=$parser->parse($file);while (my($package,$meta)=each %$packages){$provides->{$package}||= {file=>$meta->{infile},($meta->{version}eq 'undef')? (): (version=>$meta->{version}),}}}return$provides}sub save_meta {my($self,$module,$dist,$module_name,$config_deps,$build_deps)=@_;return unless$dist->{distvname}&& $dist->{source}eq 'cpan';my$base=($ENV{PERL_MM_OPT}|| '')=~ /INSTALL_BASE=/ ? ($self->install_base($ENV{PERL_MM_OPT})."/lib/perl5"): $Config{sitelibexp};my$provides=$dist->{provides};File::Path::mkpath("blib/meta",0,0777);my$local={name=>$module_name,target=>$module,version=>exists$provides->{$module_name}? ($provides->{$module_name}{version}|| $dist->{version}): $dist->{version},dist=>$dist->{distvname},pathname=>$dist->{pathname},provides=>$provides,};require JSON::PP;open my$fh,">","blib/meta/install.json" or die $!;print$fh JSON::PP::encode_json($local);if (-e "MYMETA.json"){File::Copy::copy("MYMETA.json","blib/meta/MYMETA.json")}my@cmd=(($self->{sudo}? 'sudo' : ()),$^X,'-MExtUtils::Install=install','-e',qq[install({ 'blib/meta' => '$base/$Config{archname}/.meta/$dist->{distvname}' })],);$self->run(\@cmd)}sub _merge_hashref {my($self,@hashrefs)=@_;my%hash;for my$h (@hashrefs){%hash=(%hash,%$h)}return \%hash}sub install_base {my($self,$mm_opt)=@_;$mm_opt =~ /INSTALL_BASE=(\S+)/ and return $1;die "Your PERL_MM_OPT doesn't contain INSTALL_BASE"}sub safe_eval {my($self,$code)=@_;eval$code}sub configure_features {my($self,$dist,@features)=@_;map $_->identifier,grep {$self->effective_feature($dist,$_)}@features}sub effective_feature {my($self,$dist,$feature)=@_;if ($dist->{depth}==0){my$value=$self->{features}{$feature->identifier};return$value if defined$value;return 1 if$self->{features}{__all}}if ($self->{interactive}){require CPAN::Meta::Requirements;$self->diag("[@{[ $feature->description ]}]\n",1);my$req=CPAN::Meta::Requirements->new;for my$phase (@{$dist->{want_phases}}){for my$type (@{$self->{install_types}}){$req->add_requirements($feature->prereqs->requirements_for($phase,$type))}}my$reqs=$req->as_string_hash;my@missing;for my$module (keys %$reqs){if ($self->should_install($module,$req->{$module})){push@missing,$module}}if (@missing){my$howmany=@missing;$self->diag("==> Found missing dependencies: " .join(", ",@missing)."\n",1);local$self->{prompt}=1;return$self->prompt_bool("Install the $howmany optional module(s)?","y")}}return}sub find_prereqs {my($self,$dist)=@_;my@deps=$self->extract_meta_prereqs($dist);if ($dist->{module}=~ /^Bundle::/i){push@deps,$self->bundle_deps($dist)}$self->merge_with_cpanfile($dist,\@deps);return@deps}sub merge_with_cpanfile {my($self,$dist,$deps)=@_;if ($self->{cpanfile_requirements}&&!$dist->{cpanfile}){for my$dep (@$deps){$dep->merge_with($self->{cpanfile_requirements})}}}sub extract_meta_prereqs {my($self,$dist)=@_;if ($dist->{cpanfile}){my@features=$self->configure_features($dist,$dist->{cpanfile}->features);my$prereqs=$dist->{cpanfile}->prereqs_with(@features);$self->{cpanfile_requirements}=$prereqs->merged_requirements($dist->{want_phases},['requires']);return App::cpanminus::Dependency->from_prereqs($prereqs,$dist->{want_phases},$self->{install_types})}require CPAN::Meta;my@deps;my($meta_file)=grep -f,qw(MYMETA.json MYMETA.yml);if ($meta_file){$self->chat("Checking dependencies from $meta_file ...\n");my$mymeta=eval {CPAN::Meta->load_file($meta_file,{lazy_validation=>1 })};if ($mymeta){$dist->{meta}{name}=$mymeta->name;$dist->{meta}{version}=$mymeta->version;return$self->extract_prereqs($mymeta,$dist)}}if (-e '_build/prereqs'){$self->chat("Checking dependencies from _build/prereqs ...\n");my$prereqs=do {open my$in,"_build/prereqs";$self->safe_eval(join "",<$in>)};my$meta=CPAN::Meta->new({name=>$dist->{meta}{name},version=>$dist->{meta}{version},%$prereqs },{lazy_validation=>1 },);@deps=$self->extract_prereqs($meta,$dist)}elsif (-e 'Makefile'){$self->chat("Finding PREREQ from Makefile ...\n");open my$mf,"Makefile";while (<$mf>){if (/^\#\s+PREREQ_PM => \{\s*(.*?)\s*\}/){my@all;my@pairs=split ', ',$1;for (@pairs){my ($pkg,$v)=split '=>',$_;push@all,[$pkg,$v ]}my$list=join ", ",map {"'$_->[0]' => $_->[1]"}@all;my$prereq=$self->safe_eval("no strict; +{ $list }");push@deps,App::cpanminus::Dependency->from_versions($prereq)if$prereq;last}}}return@deps}sub bundle_deps {my($self,$dist)=@_;my$match;if ($dist->{module}){$match=sub {my$meta=Module::Metadata->new_from_file($_[0]);$meta && ($meta->name eq $dist->{module})}}else {$match=sub {1}}my@files;File::Find::find({wanted=>sub {push@files,File::Spec->rel2abs($_)if /\.pm$/i && $match->($_)},no_chdir=>1,},'.');my@deps;for my$file (@files){open my$pod,"<",$file or next;my$in_contents;while (<$pod>){if (/^=head\d\s+CONTENTS/){$in_contents=1}elsif (/^=/){$in_contents=0}elsif ($in_contents){/^(\S+)\s*(\S+)?/ and push@deps,App::cpanminus::Dependency->new($1,$self->maybe_version($2))}}}return@deps}sub maybe_version {my($self,$string)=@_;return$string && $string =~ /^\.?\d/ ? $string : undef}sub extract_prereqs {my($self,$meta,$dist)=@_;my@features=$self->configure_features($dist,$meta->features);my$prereqs=$self->soften_makemaker_prereqs($meta->effective_prereqs(\@features)->clone);return App::cpanminus::Dependency->from_prereqs($prereqs,$dist->{want_phases},$self->{install_types})}sub soften_makemaker_prereqs {my($self,$prereqs)=@_;return$prereqs unless -e "inc/Module/Install.pm";for my$phase (qw(build test runtime)){my$reqs=$prereqs->requirements_for($phase,'requires');if ($reqs->requirements_for_module('ExtUtils::MakeMaker')){$reqs->clear_requirement('ExtUtils::MakeMaker');$reqs->add_minimum('ExtUtils::MakeMaker'=>0)}}$prereqs}sub cleanup_workdirs {my$self=shift;my$expire=time - 24 * 60 * 60 * $self->{auto_cleanup};my@targets;opendir my$dh,"$self->{home}/work";while (my$e=readdir$dh){next if$e !~ /^(\d+)\.\d+$/;my$time=$1;if ($time < $expire){push@targets,"$self->{home}/work/$e"}}if (@targets){if (@targets >= 64){$self->diag("Expiring " .scalar(@targets)." work directories. This might take a while...\n")}else {$self->chat("Expiring " .scalar(@targets)." work directories.\n")}File::Path::rmtree(\@targets,0,0)}}sub scandeps_append_child {my($self,$dist)=@_;my$new_node=[$dist,[]];my$curr_node=$self->{scandeps_current}|| [undef,$self->{scandeps_tree}];push @{$curr_node->[1]},$new_node;$self->{scandeps_current}=$new_node;return sub {$self->{scandeps_current}=$curr_node}}sub dump_scandeps {my$self=shift;if ($self->{format}eq 'tree'){$self->walk_down(sub {my($dist,$depth)=@_;if ($depth==0){print "$dist->{distvname}\n"}else {print " " x ($depth - 1);print "\\_ $dist->{distvname}\n"}},1)}elsif ($self->{format}=~ /^dists?$/){$self->walk_down(sub {my($dist,$depth)=@_;print$self->format_dist($dist),"\n"},0)}elsif ($self->{format}eq 'json'){require JSON::PP;print JSON::PP::encode_json($self->{scandeps_tree})}elsif ($self->{format}eq 'yaml'){require YAML;print YAML::Dump($self->{scandeps_tree})}else {$self->diag("Unknown format: $self->{format}\n")}}sub walk_down {my($self,$cb,$pre)=@_;$self->_do_walk_down($self->{scandeps_tree},$cb,0,$pre)}sub _do_walk_down {my($self,$children,$cb,$depth,$pre)=@_;for my$node (@$children){$cb->($node->[0],$depth)if$pre;$self->_do_walk_down($node->[1],$cb,$depth + 1,$pre);$cb->($node->[0],$depth)unless$pre}}sub DESTROY {my$self=shift;$self->{at_exit}->($self)if$self->{at_exit}}sub shell_quote {my($self,@stuff)=@_;if (WIN32){join ' ',map {/^${quote}.+${quote}$/ ? $_ : ($quote .$_ .$quote)}@stuff}else {String::ShellQuote::shell_quote_best_effort(@stuff)}}sub which {my($self,$name)=@_;if (File::Spec->file_name_is_absolute($name)){if (-x $name &&!-d _){return$name}}my$exe_ext=$Config{_exe};for my$dir (File::Spec->path){my$fullpath=File::Spec->catfile($dir,$name);if ((-x $fullpath || -x ($fullpath .= $exe_ext))&&!-d _){if ($fullpath =~ /\s/){$fullpath=$self->shell_quote($fullpath)}return$fullpath}}return}sub get {my($self,$uri)=@_;if ($uri =~ /^file:/){$self->file_get($uri)}else {$self->{_backends}{get}->(@_)}}sub mirror {my($self,$uri,$local)=@_;if ($uri =~ /^file:/){$self->file_mirror($uri,$local)}else {$self->{_backends}{mirror}->(@_)}}sub untar {$_[0]->{_backends}{untar}->(@_)};sub unzip {$_[0]->{_backends}{unzip}->(@_)};sub uri_to_file {my($self,$uri)=@_;if ($uri =~ s!file:/+!!){$uri="/$uri" unless$uri =~ m![a-zA-Z]:!}return$uri}sub file_get {my($self,$uri)=@_;my$file=$self->uri_to_file($uri);open my$fh,"<$file" or return;join '',<$fh>}sub file_mirror {my($self,$uri,$path)=@_;my$file=$self->uri_to_file($uri);my$source_mtime=(stat$file)[9];return 1 if -e $path && (stat$path)[9]>= $source_mtime;File::Copy::copy($file,$path);utime$source_mtime,$source_mtime,$path}sub has_working_lwp {my($self,$mirrors)=@_;my$https=grep /^https:/,@$mirrors;eval {require LWP::UserAgent;LWP::UserAgent->VERSION(5.802);require LWP::Protocol::https if$https;1}}sub init_tools {my$self=shift;return if$self->{initialized}++;if ($self->{make}=$self->which($Config{make})){$self->chat("You have make $self->{make}\n")}if ($self->{try_lwp}&& $self->has_working_lwp($self->{mirrors})){$self->chat("You have LWP $LWP::VERSION\n");my$ua=sub {LWP::UserAgent->new(parse_head=>0,env_proxy=>1,agent=>$self->agent,timeout=>30,@_,)};$self->{_backends}{get}=sub {my$self=shift;my$res=$ua->()->request(HTTP::Request->new(GET=>$_[0]));return unless$res->is_success;return$res->decoded_content};$self->{_backends}{mirror}=sub {my$self=shift;my$res=$ua->()->mirror(@_);die$res->content if$res->code==501;$res->code}}elsif ($self->{try_wget}and my$wget=$self->which('wget')){$self->chat("You have $wget\n");my@common=('--user-agent',$self->agent,'--retry-connrefused',($self->{verbose}? (): ('-q')),);$self->{_backends}{get}=sub {my($self,$uri)=@_;$self->safeexec(my$fh,$wget,$uri,@common,'-O','-')or die "wget $uri: $!";local $/;<$fh>};$self->{_backends}{mirror}=sub {my($self,$uri,$path)=@_;$self->safeexec(my$fh,$wget,$uri,@common,'-O',$path)or die "wget $uri: $!";local $/;<$fh>}}elsif ($self->{try_curl}and my$curl=$self->which('curl')){$self->chat("You have $curl\n");my@common=('--location','--user-agent',$self->agent,($self->{verbose}? (): '-s'),);$self->{_backends}{get}=sub {my($self,$uri)=@_;$self->safeexec(my$fh,$curl,@common,$uri)or die "curl $uri: $!";local $/;<$fh>};$self->{_backends}{mirror}=sub {my($self,$uri,$path)=@_;$self->safeexec(my$fh,$curl,@common,$uri,'-#','-o',$path)or die "curl $uri: $!";local $/;<$fh>}}else {require HTTP::Tiny;$self->chat("Falling back to HTTP::Tiny $HTTP::Tiny::VERSION\n");my%common=(agent=>$self->agent,);$self->{_backends}{get}=sub {my$self=shift;my$res=HTTP::Tiny->new(%common)->get($_[0]);return unless$res->{success};return$res->{content}};$self->{_backends}{mirror}=sub {my$self=shift;my$res=HTTP::Tiny->new(%common)->mirror(@_);return$res->{status}}}my$tar=$self->which('tar');my$tar_ver;my$maybe_bad_tar=sub {WIN32 || BAD_TAR || (($tar_ver=`$tar --version 2>/dev/null`)=~ /GNU.*1\.13/i)};if ($tar &&!$maybe_bad_tar->()){chomp$tar_ver;$self->chat("You have $tar: $tar_ver\n");$self->{_backends}{untar}=sub {my($self,$tarfile)=@_;my$xf=($self->{verbose}? 'v' : '')."xf";my$ar=$tarfile =~ /bz2$/ ? 'j' : 'z';my($root,@others)=`$tar ${ar}tf $tarfile` or return undef;FILE: {chomp$root;$root =~ s!^\./!!;$root =~ s{^(.+?)/.*$}{$1};if (!length($root)){$root=shift(@others);redo FILE if$root}}system "$tar $ar$xf $tarfile";return$root if -d $root;$self->diag_fail("Bad archive: $tarfile");return undef}}elsif ($tar and my$gzip=$self->which('gzip')and my$bzip2=$self->which('bzip2')){$self->chat("You have $tar, $gzip and $bzip2\n");$self->{_backends}{untar}=sub {my($self,$tarfile)=@_;my$x="x" .($self->{verbose}? 'v' : '')."f -";my$ar=$tarfile =~ /bz2$/ ? $bzip2 : $gzip;my($root,@others)=`$ar -dc $tarfile | $tar tf -` or return undef;FILE: {chomp$root;$root =~ s!^\./!!;$root =~ s{^(.+?)/.*$}{$1};if (!length($root)){$root=shift(@others);redo FILE if$root}}system "$ar -dc $tarfile | $tar $x";return$root if -d $root;$self->diag_fail("Bad archive: $tarfile");return undef}}elsif (eval {require Archive::Tar}){$self->chat("Falling back to Archive::Tar $Archive::Tar::VERSION\n");$self->{_backends}{untar}=sub {my$self=shift;my$t=Archive::Tar->new($_[0]);my($root,@others)=$t->list_files;FILE: {$root =~ s!^\./!!;$root =~ s{^(.+?)/.*$}{$1};if (!length($root)){$root=shift(@others);redo FILE if$root}}$t->extract;return -d $root ? $root : undef}}else {$self->{_backends}{untar}=sub {die "Failed to extract $_[1] - You need to have tar or Archive::Tar installed.\n"}}if (my$unzip=$self->which('unzip')){$self->chat("You have $unzip\n");$self->{_backends}{unzip}=sub {my($self,$zipfile)=@_;my$opt=$self->{verbose}? '' : '-q';my(undef,$root,@others)=`$unzip -t $zipfile` or return undef;chomp$root;$root =~ s{^\s+testing:\s+([^/]+)/.*?\s+OK$}{$1};system "$unzip $opt $zipfile";return$root if -d $root;$self->diag_fail("Bad archive: [$root] $zipfile");return undef}}else {$self->{_backends}{unzip}=sub {eval {require Archive::Zip}or die "Failed to extract $_[1] - You need to have unzip or Archive::Zip installed.\n";my($self,$file)=@_;my$zip=Archive::Zip->new();my$status;$status=$zip->read($file);$self->diag_fail("Read of file[$file] failed")if$status!=Archive::Zip::AZ_OK();my@members=$zip->members();for my$member (@members){my$af=$member->fileName();next if ($af =~ m!^(/|\.\./)!);$status=$member->extractToFileNamed($af);$self->diag_fail("Extracting of file[$af] from zipfile[$file failed")if$status!=Archive::Zip::AZ_OK()}my ($root)=$zip->membersMatching(qr<^[^/]+/$>);$root &&= $root->fileName;return -d $root ? $root : undef}}}sub safeexec {my$self=shift;my$rdr=$_[0]||= Symbol::gensym();if (WIN32){my$cmd=$self->shell_quote(@_[1..$#_]);return open($rdr,"$cmd |")}if (my$pid=open($rdr,'-|')){return$pid}elsif (defined$pid){exec(@_[1 .. $#_ ]);exit 1}else {return}}sub mask_uri_passwords {my($self,@strings)=@_;s{ (https?://) ([^:/]+) : [^@/]+ @ }{$1$2:********@}gx for@strings;return@strings}1;
   It appears your cpanm executable was installed via `perlbrew install-cpanm`.
   cpanm --self-upgrade won't upgrade the version of cpanm you're running.
   
@@ -104,7 +104,7 @@ $fatpacked{"App/cpanminus/script.pm"} = '#line '.(1+__LINE__).' "'.__FILE__."\"\
   ! Can't write to $Config{installsitelib} and $Config{installsitebin}: Installing modules to $ENV{HOME}/perl5
   ! To turn off this warning, you have to do one of the following:
   !   - run me as a root or with --sudo option (to install to $Config{installsitelib} and $Config{installsitebin})
-  !   - Configure local::lib your existing local::lib in this shell to set PERL_MM_OPT etc.
+  !   - Configure local::lib in your existing shell to set PERL_MM_OPT etc.
   !   - Install local::lib by running the following commands
   !
   !         cpanm --local-lib=~/perl5 local::lib && eval \$(perl -I ~/perl5/lib/perl5/ -Mlocal::lib)
@@ -465,15 +465,17 @@ no strict 'refs';
 
 if ($] < 5.008) {
   *{"${class}::INC"} = sub {
-     if (my $fat = $_[0]{$_[1]}) {
-       return sub {
-         return 0 unless length $fat;
-         $fat =~ s/^([^\n]*\n?)//;
-         $_ = $1;
-         return 1;
-       };
-     }
-     return;
+    if (my $fat = $_[0]{$_[1]}) {
+      my $pos = 0;
+      my $last = length $fat;
+      return (sub {
+        return 0 if $pos == $last;
+        my $next = (1 + index $fat, "\n", $pos) || $last;
+        $_ .= substr $fat, $pos, $next - $pos;
+        $pos = $next;
+        return 1;
+      });
+    }
   };
 }
 
@@ -816,6 +818,11 @@ Defaults to false for both.
 B<EXPERIMENTAL>: Installs develop phase dependencies in META files or
 C<cpanfile> when used with C<--installdeps>. Defaults to false.
 
+=item --with-configure
+
+B<EXPERIMENTAL>: Installs configure phase dependencies in C<cpanfile>
+when used with C<--installdeps>. Defaults to false.
+
 =item --with-feature, --without-feature, --with-all-features
 
 B<EXPERIMENTAL>: Specifies the feature to enable, if a module supports
@@ -1036,6 +1043,23 @@ Normally with C<--lwp>, C<--wget> and C<--curl> options set to true
 
 =back
 
+=head1 ENVIRONMENT VARIABLES
+
+=over 4
+
+=item PERL_CPANM_HOME
+
+The directory cpanm should use to store downloads and build and test
+modules. Defaults to the C<.cpanm> directory in your user's home
+directory.
+
+=item PERL_CPANM_OPT
+
+If set, adds a set of default options to every cpanm command. These
+options come first, and so are overridden by command-line options.
+
+=back
+
 =head1 SEE ALSO
 
 L<App::cpanminus>
diff --git a/bower.json b/bower.json
deleted file mode 100644
index f0916084d3..0000000000
--- a/bower.json
+++ /dev/null
@@ -1,18 +0,0 @@
-{
-  "name": "jbrowse",
-  "version": "1.12.2-SNAPSHOT",
-  "dependencies": {
-    "dojo":         "1.12.2",
-    "dojox":        "1.12.2",
-    "dijit":        "1.12.2",
-    "util":         "dojo/util#1.12.2",
-    "dgrid":        "1.1.0",
-    "dstore":       "1.1.1",
-    "jDataView":    "rbuels/jDataView",
-    "jszlib":       "rbuels/jszlib",
-    "FileSaver":    "dkasenberg/FileSaver.js",
-    "json-schema":  "kriszyp/json-schema#0.2.1",
-    "lazyload":     "rbuels/lazyload#amd",
-    "dbind":        "rbuels/dbind"
-  }
-}
diff --git a/build/Makefile b/build/Makefile
index b5fd23b8fa..29f3e97fd7 100644
--- a/build/Makefile
+++ b/build/Makefile
@@ -2,9 +2,9 @@ BASEDIR = $(PWD)
 
 JSDIR = $(BASEDIR)/src/JBrowse
 PLUGINDIR = $(BASEDIR)/plugins
-JS_SRCFILES = $(shell find $(JSDIR)/ -type f -and -name '*.js')
+JS_SRCFILES = $(shell find $(JSDIR) -type f -and -name '*.js')
 
-CSS_SRCFILES = $(shell find $(BASEDIR)/ -type f -and -name '*.css')
+CSS_SRCFILES = $(shell find $(BASEDIR) -type f -and -name '*.css')
 
 RELEASE_VERSION = $(shell node -e 'require("fs").readFile("$(JSDIR)/package.json", function(e,d){console.log(JSON.parse(d).version)})')
 RELEASE_NAME = JBrowse-$(RELEASE_VERSION)
@@ -14,31 +14,26 @@ RELEASE_MIN  = $(RELEASE_NAME)
 RELEASE_MIN_DIR  = $(BASEDIR)/$(RELEASE_MIN)/
 RELEASE_DESKTOP_OSX = $(RELEASE_NAME)-desktop-osx
 RELEASE_DESKTOP_WIN = $(RELEASE_NAME)-desktop-win
-#RELEASE_DESKTOP_LINUX = $(RELEASE_NAME)-desktop-linux
+RELEASE_DESKTOP_LINUX = $(RELEASE_NAME)-desktop-linux
 
 ZIP=zip -q --symlinks -r
 UNZIP=unzip -q
 SHASUM=shasum
 
 
-all: docs
+all: clean release-dev release-min
 
-release-version.txt:
-	echo $(RELEASE_VERSION) > release-version.txt
-
-release: release-version.txt release-normal release-min release-notes.html
+release: release-dev release-min release-notes.html
 	ls -lh *.zip
 	$(SHASUM) *.zip
 
-release-notest: release
-
-release-electron-darwin: release-notest
+release-electron-darwin: release
 	cd $(RELEASE_MIN)&&./setup.sh legacy&&cd ..
 	npm install
 	electron-packager $(RELEASE_MIN) JBrowseDesktop --platform=darwin --arch=x64
 	$(ZIP) $(RELEASE_DESKTOP_OSX).zip JBrowseDesktop-darwin-x64
 
-release-electron-all: release-notest
+release-electron-all: release
 	echo "Building desktop packages..."
 	cd $(RELEASE_MIN)&&./setup.sh legacy&&cd ..
 	npm install
@@ -60,60 +55,27 @@ release-notes.html: release-notes.txt
 node_modules:
 	npm install
 
-release-normal: superclean $(JS_SRCFILES) node_modules
+release-dev: $(JS_SRCFILES) node_modules
+	rm -rf dist
 	mkdir $(RELEASE_FULL_DIR);
 	cp -R `ls -1d * | grep -v $(RELEASE_FULL)` $(RELEASE_FULL_DIR);
-	rm -rf $(RELEASE_FULL_DIR)/src/*/.git $(RELEASE_FULL_DIR)/$(RELEASE_FULL) $(RELEASE_FULL_DIR)/src/util $(RELEASE_FULL_DIR)/build $(RELEASE_FULL_DIR)/node_modules;
+	rm -rf $(RELEASE_FULL_DIR)/src/*/.git $(RELEASE_FULL_DIR)/$(RELEASE_FULL) $(RELEASE_FULL_DIR)/src/util $(RELEASE_FULL_DIR)/node_modules $(RELEASE_FULL_DIR)/extlib;
 
 	# zip up the dev release
 	$(ZIP) $(RELEASE_FULL).zip $(RELEASE_FULL)/;
 
-PLUGINS = $(wildcard $(PLUGINDIR)/*)
-
-plugins-min: release-normal
-	for pdir in $(PLUGINS); do  \
-		pname=`basename $$pdir`; \
-		node $(BASEDIR)/src/dojo/dojo.js load=build \
-			--require "$(JSDIR)/init.js" \
-			--profile "$$pdir/js/$$pname" \
-			--releaseDir "$(RELEASE_FULL_DIR)/plugins/$$pname/built" \
-			2>&1 | grep -v '^warn'; \
-		rm -rf "$(RELEASE_FULL_DIR)/plugins/$$pname/js"; \
-		mv "$(RELEASE_FULL_DIR)/plugins/$$pname/built/$$pname" "$(RELEASE_FULL_DIR)/plugins/$$pname/js"; \
-		rm -rf "$(RELEASE_FULL_DIR)/plugins/$$pname/built"; \
-		rm -rf "$(RELEASE_FULL_DIR)/plugins/$$pname/.git"; \
-	done
-
-release-min: release-normal plugins-min
-
-        # run the dojo build in the full dir to minify
-	node src/dojo/dojo.js \
-		load=build \
-		--require "$(JSDIR)/init.js" \
-		--profile "$(JSDIR)/JBrowse.profile.js" \
-		--releaseDir "$(RELEASE_FULL_DIR)/src" \
-		2>&1 | grep -v '^warn';
-
+release-min: $(JS_SRCFILES) node_modules
 	cp -a $(RELEASE_FULL_DIR) $(RELEASE_MIN_DIR);
 
-	for P in src docs/jsdoc tests tests_extended build node_modules; do \
+	for P in src browser css docs/jsdoc tests build node_modules extlib dist; do \
 	    rm -rf $(RELEASE_MIN_DIR)$$P; \
 	done;
-	for P in src/dojo/dojo.js \
-			`find src/ -name nls -and -type d -and -not -wholename '*/tests/*' | grep -v src/dojox/grid` \
-			src/dojo/resources \
-			src/dojox/grid \
-			src/dojox/gfx/vml.js \
-			src/dojox/form/resources \
-			src/dojox/gfx/vml_attach.js \
-			src/dijit/themes/tundra \
-			src/dijit/form/templates \
-			src/dijit/icons \
-			src/dijit/templates \
-			src/JBrowse \
-			src/perl5 \
-			src/dgrid/css \
-			src/jDataView \
+
+	rm -rf dist
+	JBROWSE_BUILD_MIN=1 npm run build
+	cp -r dist $(RELEASE_MIN_DIR)
+
+	for P in src/perl5 \
 	; do \
 	    mkdir -p `dirname $(RELEASE_MIN_DIR)$$P`; \
 	    if [ -d $$P ]; then \
@@ -123,17 +85,10 @@ release-min: release-normal plugins-min
 	    fi;\
 	done
 
-	cp -r $(RELEASE_MIN_DIR)/src/dojo/nls $(RELEASE_MIN_DIR)/src/nls;
-
-	find $(RELEASE_MIN_DIR) -name '*.uncompressed.js' -or -name '*.consoleStripped.js' -exec rm {} ';'
-
-        # zip it up
+	# zip it up
 	$(ZIP) $(RELEASE_MIN).zip $(RELEASE_MIN)/;
 
-superclean: clean
-	git clean -fdxq --exclude=./plugins
-
 clean:
-	rm -rf docs/jsdoc *-min.js release-notes.html;
+	git clean -ffdxq --exclude=/plugins/ --exclude=/node_modules/ --exclude=/extlib/
 
-.PHONY: all clean superclean jbrowse docs doc release release-min release-normal plugins-min
+.PHONY: all clean jbrowse docs doc release release-min release-dev plugins-min
diff --git a/build/dojo-loader-config.js b/build/dojo-loader-config.js
new file mode 100644
index 0000000000..fec32a1116
--- /dev/null
+++ b/build/dojo-loader-config.js
@@ -0,0 +1,65 @@
+const path = require('path')
+const glob = require('glob')
+
+const {getPluginName} = require('./plugin-util')
+
+module.exports = function(env) {
+
+    dojoConfig = {
+		baseUrl: '.',
+		packages: [
+			{
+				name: 'dojo',
+				location: env.dojoRoot + '/dojo',
+			},
+			{
+				name: 'dijit',
+				location: env.dojoRoot + '/dijit',
+			},
+			{
+				name: 'dojox',
+				location: env.dojoRoot + '/dojox',
+			},
+            {
+                name: 'JBrowse',
+                location: 'src/JBrowse',
+                lib: '.'
+            },
+            {
+                name: 'dgrid',
+                location: env.dojoRoot + '/dgrid',
+                lib: '.'
+            },
+            {
+                name: 'dstore',
+                location: env.dojoRoot + '/dojo-dstore',
+                lib: '.'
+            },
+            {
+                name: 'jszlib',
+                location: env.dojoRoot + '/jszlib',
+                lib: '.'
+            },
+            {
+                name: 'FileSaver',
+                location: env.dojoRoot + '/filesaver.js',
+                lib: '.'
+            }
+        ]
+        .concat(
+            glob.sync('plugins/*/')
+            .concat(
+                glob.sync('node_modules/**/*-jbrowse-plugin/')
+            )
+            .map( pluginDir => ({
+                name: getPluginName(pluginDir),
+                pluginDir,
+                location: pluginDir+'js'
+            }))
+        )
+        ,
+
+		async: true
+    };
+	return dojoConfig;
+};
diff --git a/build/dojo-webpack-plugin-loader/dojo/dojo.js b/build/dojo-webpack-plugin-loader/dojo/dojo.js
new file mode 100644
index 0000000000..49cbec4d66
--- /dev/null
+++ b/build/dojo-webpack-plugin-loader/dojo/dojo.js
@@ -0,0 +1,1996 @@
+module.exports = function(userConfig, defaultConfig, global, window) { this.loaderVersion = "1.13.0"; (function(
+	userConfig,
+	defaultConfig
+){
+	// summary:
+	//		This is the "source loader" and is the entry point for Dojo during development. You may also load Dojo with
+	//		any AMD-compliant loader via the package main module dojo/main.
+	// description:
+	//		This is the "source loader" for Dojo. It provides an AMD-compliant loader that can be configured
+	//		to operate in either synchronous or asynchronous modes. After the loader is defined, dojo is loaded
+	//		IAW the package main module dojo/main. In the event you wish to use a foreign loader, you may load dojo as a package
+	//		via the package main module dojo/main and this loader is not required; see dojo/package.json for details.
+	//
+	//		In order to keep compatibility with the v1.x line, this loader includes additional machinery that enables
+	//		the dojo.provide, dojo.require et al API. This machinery is loaded by default, but may be dynamically removed
+	//		via the has.js API and statically removed via the build system.
+	//
+	//		This loader includes sniffing machinery to determine the environment; the following environments are supported:
+	//
+	//		- browser
+	//		- node.js
+	//		- rhino
+	//
+	//		This is the so-called "source loader". As such, it includes many optional features that may be discarded by
+	//		building a customized version with the build system.
+
+	// Design and Implementation Notes
+	//
+	// This is a dojo-specific adaption of bdLoad, donated to the dojo foundation by Altoviso LLC.
+	//
+	// This function defines an AMD-compliant (http://wiki.commonjs.org/wiki/Modules/AsynchronousDefinition)
+	// loader that can be configured to operate in either synchronous or asynchronous modes.
+	//
+	// Since this machinery implements a loader, it does not have the luxury of using a load system and/or
+	// leveraging a utility library. This results in an unpleasantly long file; here is a road map of the contents:
+	//
+	//	 1. Small library for use implementing the loader.
+	//	 2. Define the has.js API; this is used throughout the loader to bracket features.
+	//	 3. Define the node.js and rhino sniffs and sniff.
+	//	 4. Define the loader's data.
+	//	 5. Define the configuration machinery.
+	//	 6. Define the script element sniffing machinery and sniff for configuration data.
+	//	 7. Configure the loader IAW the provided user, default, and sniffing data.
+	//	 8. Define the global require function.
+	//	 9. Define the module resolution machinery.
+	//	10. Define the module and plugin module definition machinery
+	//	11. Define the script injection machinery.
+	//	12. Define the window load detection.
+	//	13. Define the logging API.
+	//	14. Define the tracing API.
+	//	16. Define the AMD define function.
+	//	17. Define the dojo v1.x provide/require machinery--so called "legacy" modes.
+	//	18. Publish global variables.
+	//
+	// Language and Acronyms and Idioms
+	//
+	// moduleId: a CJS module identifier, (used for public APIs)
+	// mid: moduleId (used internally)
+	// packageId: a package identifier (used for public APIs)
+	// pid: packageId (used internally); the implied system or default package has pid===""
+	// pack: package is used internally to reference a package object (since javascript has reserved words including "package")
+	// prid: plugin resource identifier
+	// The integer constant 1 is used in place of true and 0 in place of false.
+
+	// define global
+	var globalObject = (function(){
+		if (typeof global !== 'undefined' && typeof global !== 'function') {
+			// global spec defines a reference to the global object called 'global'
+			// https://github.com/tc39/proposal-global
+			// `global` is also defined in NodeJS
+			return global;
+		}
+		else if (typeof window !== 'undefined') {
+			// window is defined in browsers
+			return window;
+		}
+		else if (typeof self !== 'undefined') {
+			// self is defined in WebWorkers
+			return self;
+		}
+		return this;
+	})();
+
+	// define a minimal library to help build the loader
+	var	noop = function(){
+		},
+
+		isEmpty = function(it){
+			for(var p in it){
+				return 0;
+			}
+			return 1;
+		},
+
+		toString = {}.toString,
+
+		isFunction = function(it){
+			return toString.call(it) == "[object Function]";
+		},
+
+		isString = function(it){
+			return toString.call(it) == "[object String]";
+		},
+
+		isArray = function(it){
+			return toString.call(it) == "[object Array]";
+		},
+
+		forEach = function(vector, callback){
+			if(vector){
+				for(var i = 0; i < vector.length;){
+					callback(vector[i++]);
+				}
+			}
+		},
+
+		mix = function(dest, src){
+			for(var p in src){
+				dest[p] = src[p];
+			}
+			return dest;
+		},
+
+		makeError = function(error, info){
+			return mix(new Error(error), {src:"dojoLoader", info:info});
+		},
+
+		uidSeed = 1,
+
+		uid = function(){
+			// Returns a unique identifier (within the lifetime of the document) of the form /_d+/.
+			return "_" + uidSeed++;
+		},
+
+		// FIXME: how to doc window.require() api
+
+		// this will be the global require function; define it immediately so we can start hanging things off of it
+		req = function(
+			config,		  //(object, optional) hash of configuration properties
+			dependencies, //(array of commonjs.moduleId, optional) list of modules to be loaded before applying callback
+			callback	  //(function, optional) lambda expression to apply to module values implied by dependencies
+		){
+			return contextRequire(config, dependencies, callback, 0, req);
+		},
+
+		// the loader uses the has.js API to control feature inclusion/exclusion; define then use throughout
+		global = globalObject,
+
+		doc = global.document,
+
+		element = doc && doc.createElement("DiV"),
+
+		has = req.has = function(name){
+			return isFunction(hasCache[name]) ? (hasCache[name] = hasCache[name](global, doc, element)) : hasCache[name];
+		},
+
+		hasCache = has.cache = defaultConfig.hasCache;
+
+	if (isFunction(userConfig)) {
+		userConfig = userConfig(globalObject);
+	}
+
+	has.add = function(name, test, now, force){
+		(hasCache[name]===undefined || force) && (hasCache[name] = test);
+		return now && has(name);
+	};
+
+	 0 && has.add("host-node", userConfig.has && "host-node" in userConfig.has ?
+		userConfig.has["host-node"] :
+		(typeof process == "object" && process.versions && process.versions.node && process.versions.v8));
+	if( 0 ){
+		// fixup the default config for node.js environment
+		require("./_base/configNode.js").config(defaultConfig);
+		// remember node's require (with respect to baseUrl==dojo's root)
+		defaultConfig.loaderPatch.nodeRequire = require;
+	}
+
+	 0 && has.add("host-rhino", userConfig.has && "host-rhino" in userConfig.has ?
+		userConfig.has["host-rhino"] :
+		(typeof load == "function" && (typeof Packages == "function" || typeof Packages == "object")));
+	if( 0 ){
+		// owing to rhino's lame feature that hides the source of the script, give the user a way to specify the baseUrl...
+		for(var baseUrl = userConfig.baseUrl || ".", arg, rhinoArgs = this.arguments, i = 0; i < rhinoArgs.length;){
+			arg = (rhinoArgs[i++] + "").split("=");
+			if(arg[0] == "baseUrl"){
+				baseUrl = arg[1];
+				break;
+			}
+		}
+		load(baseUrl + "/_base/configRhino.js");
+		rhinoDojoConfig(defaultConfig, baseUrl, rhinoArgs);
+	}
+
+	 0 && has.add("host-webworker", ((typeof WorkerGlobalScope !== 'undefined') && (self instanceof WorkerGlobalScope)));
+	if( 0 ){
+		mix(defaultConfig.hasCache, {
+			"host-browser": 0,
+			"dom": 0,
+			"dojo-dom-ready-api": 0,
+			"dojo-sniff": 0,
+			"dojo-inject-api": 1,
+			"host-webworker": 1,
+			"dojo-guarantee-console": 0 // console is immutable in FF30+, see https://bugs.dojotoolkit.org/ticket/18100
+		});
+
+		defaultConfig.loaderPatch = {
+			injectUrl: function(url, callback){
+				// TODO:
+				//		This is not async, nor can it be in Webworkers.  It could be made better by passing
+				//		the entire require array into importScripts at.  This way the scripts are loaded in
+				//		async mode; even if the callbacks are ran in sync.  It is not a major issue as webworkers
+				//		tend to be long running where initial startup is not a major factor.
+
+				try{
+					importScripts(url);
+					callback();
+				}catch(e){
+					console.info("failed to load resource (" + url + ")");
+					console.error(e);
+				}
+			}
+		};
+	}
+
+	// userConfig has tests override defaultConfig has tests; do this after the environment detection because
+	// the environment detection usually sets some has feature values in the hasCache.
+	for(var p in userConfig.has){
+		has.add(p, userConfig.has[p], 0, 1);
+	}
+
+	//
+	// define the loader data
+	//
+
+	// the loader will use these like symbols if the loader has the traceApi; otherwise
+	// define magic numbers so that modules can be provided as part of defaultConfig
+	var	requested = 1,
+		arrived = 2,
+		nonmodule = 3,
+		executing = 4,
+		executed = 5;
+
+	if( 0 ){
+		// these make debugging nice; but using strings for symbols is a gross rookie error; don't do it for production code
+		requested = "requested";
+		arrived = "arrived";
+		nonmodule = "not-a-module";
+		executing = "executing";
+		executed = "executed";
+	}
+
+	var legacyMode = 0,
+		sync = "sync",
+		xd = "xd",
+		syncExecStack = [],
+		dojoRequirePlugin = 0,
+		checkDojoRequirePlugin = noop,
+		transformToAmd = noop,
+		getXhr;
+	if( 0 ){
+		req.isXdUrl = noop;
+
+		req.initSyncLoader = function(dojoRequirePlugin_, checkDojoRequirePlugin_, transformToAmd_){
+			// the first dojo/_base/loader loaded gets to define these variables; they are designed to work
+			// in the presence of zero to many mapped dojo/_base/loaders
+			if(!dojoRequirePlugin){
+				dojoRequirePlugin = dojoRequirePlugin_;
+				checkDojoRequirePlugin = checkDojoRequirePlugin_;
+				transformToAmd = transformToAmd_;
+			}
+
+			return {
+				sync:sync,
+				requested:requested,
+				arrived:arrived,
+				nonmodule:nonmodule,
+				executing:executing,
+				executed:executed,
+				syncExecStack:syncExecStack,
+				modules:modules,
+				execQ:execQ,
+				getModule:getModule,
+				injectModule:injectModule,
+				setArrived:setArrived,
+				signal:signal,
+				finishExec:finishExec,
+				execModule:execModule,
+				dojoRequirePlugin:dojoRequirePlugin,
+				getLegacyMode:function(){return legacyMode;},
+				guardCheckComplete:guardCheckComplete
+			};
+		};
+
+		if( 0  ||  0 ){
+			// in legacy sync mode, the loader needs a minimal XHR library
+
+			var locationProtocol = location.protocol,
+				locationHost = location.host;
+			req.isXdUrl = function(url){
+				if(/^\./.test(url)){
+					// begins with a dot is always relative to page URL; therefore not xdomain
+					return false;
+				}
+				if(/^\/\//.test(url)){
+					// for v1.6- backcompat, url starting with // indicates xdomain
+					return true;
+				}
+				// get protocol and host
+				// \/+ takes care of the typical file protocol that looks like file:///drive/path/to/file
+				// locationHost is falsy if file protocol => if locationProtocol matches and is "file:", || will return false
+				var match = url.match(/^([^\/\:]+\:)\/+([^\/]+)/);
+				return match && (match[1] != locationProtocol || (locationHost && match[2] != locationHost));
+			};
+
+
+			// note: to get the file:// protocol to work in FF, you must set security.fileuri.strict_origin_policy to false in about:config
+			 1 || has.add("dojo-xhr-factory", 1);
+			 0 && has.add("dojo-force-activex-xhr",  1  && !doc.addEventListener && window.location.protocol == "file:");
+			has.add("native-xhr", typeof XMLHttpRequest != "undefined");
+			if(has("native-xhr") && ! 0 ){
+				getXhr = function(){
+					return new XMLHttpRequest();
+				};
+			}else{
+				// if in the browser an old IE; find an xhr
+				for(var XMLHTTP_PROGIDS = ['Msxml2.XMLHTTP', 'Microsoft.XMLHTTP', 'Msxml2.XMLHTTP.4.0'], progid, i = 0; i < 3;){
+					try{
+						progid = XMLHTTP_PROGIDS[i++];
+						if(new ActiveXObject(progid)){
+							// this progid works; therefore, use it from now on
+							break;
+						}
+					}catch(e){
+						// squelch; we're just trying to find a good ActiveX progid
+						// if they all fail, then progid ends up as the last attempt and that will signal the error
+						// the first time the client actually tries to exec an xhr
+					}
+				}
+				getXhr = function(){
+					return new ActiveXObject(progid);
+				};
+			}
+			req.getXhr = getXhr;
+
+			has.add("dojo-gettext-api", 1);
+			req.getText = function(url, async, onLoad){
+				var xhr = getXhr();
+				xhr.open('GET', fixupUrl(url), false);
+				xhr.send(null);
+				if(xhr.status == 200 || (!location.host && !xhr.status)){
+					if(onLoad){
+						onLoad(xhr.responseText, async);
+					}
+				}else{
+					throw makeError("xhrFailed", xhr.status);
+				}
+				return xhr.responseText;
+			};
+		}
+	}else{
+		req.async = 1;
+	}
+
+	//
+	// loader eval
+	//
+	var eval_ =   1  ?
+		// noop eval if there are csp restrictions
+		function(){} :
+		// use the function constructor so our eval is scoped close to (but not in) in the global space with minimal pollution
+		new Function('return eval(arguments[0]);');
+
+	req.eval =
+		function(text, hint){
+			return eval_(text + "\r\n//# sourceURL=" + hint);
+		};
+
+	//
+	// loader micro events API
+	//
+	var listenerQueues = {},
+		error = "error",
+		signal = req.signal = function(type, args){
+			var queue = listenerQueues[type];
+			// notice we run a copy of the queue; this allows listeners to add/remove
+			// other listeners without affecting this particular signal
+			forEach(queue && queue.slice(0), function(listener){
+				listener.apply(null, isArray(args) ? args : [args]);
+			});
+		},
+		on = req.on = function(type, listener){
+			// notice a queue is not created until a client actually connects
+			var queue = listenerQueues[type] || (listenerQueues[type] = []);
+			queue.push(listener);
+			return {
+				remove:function(){
+					for(var i = 0; i<queue.length; i++){
+						if(queue[i]===listener){
+							queue.splice(i, 1);
+							return;
+						}
+					}
+				}
+			};
+		};
+
+	// configuration machinery; with an optimized/built defaultConfig, all configuration machinery can be discarded
+	// lexical variables hold key loader data structures to help with minification; these may be completely,
+	// one-time initialized by defaultConfig for optimized/built versions
+	var
+		aliases
+			// a vector of pairs of [regexs or string, replacement] => (alias, actual)
+			= [],
+
+		paths
+			// CommonJS paths
+			= {},
+
+		pathsMapProg
+			// list of (from-path, to-path, regex, length) derived from paths;
+			// a "program" to apply paths; see computeMapProg
+			= [],
+
+		packs
+			// a map from packageId to package configuration object; see fixupPackageInfo
+			= {},
+
+		map = req.map
+			// AMD map config variable; dojo/_base/kernel needs req.map to figure out the scope map
+			= {},
+
+		mapProgs
+			// vector of quads as described by computeMapProg; map-key is AMD map key, map-value is AMD map value
+			= [],
+
+		modules
+			// A hash:(mid) --> (module-object) the module namespace
+			//
+			// pid: the package identifier to which the module belongs (e.g., "dojo"); "" indicates the system or default package
+			// mid: the fully-resolved (i.e., mappings have been applied) module identifier without the package identifier (e.g., "dojo/io/script")
+			// url: the URL from which the module was retrieved
+			// pack: the package object of the package to which the module belongs
+			// executed: 0 => not executed; executing => in the process of traversing deps and running factory; executed => factory has been executed
+			// deps: the dependency vector for this module (vector of modules objects)
+			// def: the factory for this module
+			// result: the result of the running the factory for this module
+			// injected: (0 | requested | arrived) the status of the module; nonmodule means the resource did not call define
+			// load: plugin load function; applicable only for plugins
+			//
+			// Modules go through several phases in creation:
+			//
+			// 1. Requested: some other module's definition or a require application contained the requested module in
+			//	  its dependency vector or executing code explicitly demands a module via req.require.
+			//
+			// 2. Injected: a script element has been appended to the insert-point element demanding the resource implied by the URL
+			//
+			// 3. Loaded: the resource injected in [2] has been evaluated.
+			//
+			// 4. Defined: the resource contained a define statement that advised the loader about the module. Notice that some
+			//	  resources may just contain a bundle of code and never formally define a module via define
+			//
+			// 5. Evaluated: the module was defined via define and the loader has evaluated the factory and computed a result.
+			= {},
+
+		cacheBust
+			// query string to append to module URLs to bust browser cache
+			= "",
+
+		cache
+			// hash:(mid | url)-->(function | string)
+			//
+			// A cache of resources. The resources arrive via a config.cache object, which is a hash from either mid --> function or
+			// url --> string. The url key is distinguished from the mid key by always containing the prefix "url:". url keys as provided
+			// by config.cache always have a string value that represents the contents of the resource at the given url. mid keys as provided
+			// by configl.cache always have a function value that causes the same code to execute as if the module was script injected.
+			//
+			// Both kinds of key-value pairs are entered into cache via the function consumePendingCache, which may relocate keys as given
+			// by any mappings *iff* the config.cache was received as part of a module resource request.
+			//
+			// Further, for mid keys, the implied url is computed and the value is entered into that key as well. This allows mapped modules
+			// to retrieve cached items that may have arrived consequent to another namespace.
+			//
+			 = {},
+
+		urlKeyPrefix
+			// the prefix to prepend to a URL key in the cache.
+			= "url:",
+
+		pendingCacheInsert
+			// hash:(mid)-->(function)
+			//
+			// Gives a set of cache modules pending entry into cache. When cached modules are published to the loader, they are
+			// entered into pendingCacheInsert; modules are then pressed into cache upon (1) AMD define or (2) upon receiving another
+			// independent set of cached modules. (1) is the usual case, and this case allows normalizing mids given in the pending
+			// cache for the local configuration, possibly relocating modules.
+			 = {},
+
+		dojoSniffConfig
+			// map of configuration variables
+			// give the data-dojo-config as sniffed from the document (if any)
+			= {},
+
+		insertPointSibling
+			// the nodes used to locate where scripts are injected into the document
+			= 0;
+
+	if( 1 ){
+		var consumePendingCacheInsert = function(referenceModule, clear){
+				clear = clear !== false;
+				var p, item, match, now, m;
+				for(p in pendingCacheInsert){
+					item = pendingCacheInsert[p];
+					match = p.match(/^url\:(.+)/);
+					if(match){
+						cache[urlKeyPrefix + toUrl(match[1], referenceModule)] =  item;
+					}else if(p=="*now"){
+						now = item;
+					}else if(p!="*noref"){
+						m = getModuleInfo(p, referenceModule, true);
+						cache[m.mid] = cache[urlKeyPrefix + m.url] = item;
+					}
+				}
+				if(now){
+					now(createRequire(referenceModule));
+				}
+				if(clear){
+					pendingCacheInsert = {};
+				}
+			},
+
+			escapeString = function(s){
+				return s.replace(/([\.$?*|{}\(\)\[\]\\\/\+^])/g, function(c){ return "\\" + c; });
+			},
+
+			computeMapProg = function(map, dest){
+				// This routine takes a map as represented by a JavaScript object and initializes dest, a vector of
+				// quads of (map-key, map-value, refex-for-map-key, length-of-map-key), sorted decreasing by length-
+				// of-map-key. The regex looks for the map-key followed by either "/" or end-of-string at the beginning
+				// of a the search source. Notice the map-value is irrelevant to the algorithm
+				dest.splice(0, dest.length);
+				for(var p in map){
+					dest.push([
+						p,
+						map[p],
+						new RegExp("^" + escapeString(p) + "(\/|$)"),
+						p.length]);
+				}
+				dest.sort(function(lhs, rhs){ return rhs[3] - lhs[3]; });
+				return dest;
+			},
+
+			computeAliases = function(config, dest){
+				forEach(config, function(pair){
+					// take a fixed-up copy...
+					dest.push([isString(pair[0]) ? new RegExp("^" + escapeString(pair[0]) + "$") : pair[0], pair[1]]);
+				});
+			},
+
+
+			fixupPackageInfo = function(packageInfo){
+				// calculate the precise (name, location, main, mappings) for a package
+				var name = packageInfo.name;
+				if(!name){
+					// packageInfo must be a string that gives the name
+					name = packageInfo;
+					packageInfo = {name:name};
+				}
+				packageInfo = mix({main:"main"}, packageInfo);
+				packageInfo.location = packageInfo.location ? packageInfo.location : name;
+
+				// packageMap is deprecated in favor of AMD map
+				if(packageInfo.packageMap){
+					map[name] = packageInfo.packageMap;
+				}
+
+				if(!packageInfo.main.indexOf("./")){
+					packageInfo.main = packageInfo.main.substring(2);
+				}
+
+				// now that we've got a fully-resolved package object, push it into the configuration
+				packs[name] = packageInfo;
+			},
+
+			delayedModuleConfig
+				// module config cannot be consumed until the loader is completely initialized; therefore, all
+				// module config detected during booting is memorized and applied at the end of loader initialization
+				// TODO: this is a bit of a kludge; all config should be moved to end of loader initialization, but
+				// we'll delay this chore and do it with a final loader 1.x cleanup after the 2.x loader prototyping is complete
+				= [],
+
+
+			config = function(config, booting, referenceModule){
+				for(var p in config){
+					if(p=="waitSeconds"){
+						req.waitms = (config[p] || 0) * 1000;
+					}
+					if(p=="cacheBust"){
+						cacheBust = config[p] ? (isString(config[p]) ? config[p] : (new Date()).getTime() + "") : "";
+					}
+					if(p=="baseUrl" || p=="combo"){
+						req[p] = config[p];
+					}
+					if( 0  && p=="async"){
+						// falsy or "sync" => legacy sync loader
+						// "xd" => sync but loading xdomain tree and therefore loading asynchronously (not configurable, set automatically by the loader)
+						// "legacyAsync" => permanently in "xd" by choice
+						// "debugAtAllCosts" => trying to load everything via script injection (not implemented)
+						// otherwise, must be truthy => AMD
+						// legacyMode: sync | legacyAsync | xd | false
+						var mode = config[p];
+						req.legacyMode = legacyMode = (isString(mode) && /sync|legacyAsync/.test(mode) ? mode : (!mode ? sync : false));
+						req.async = !legacyMode;
+					}
+					if(config[p]!==hasCache){
+						// accumulate raw config info for client apps which can use this to pass their own config
+						req.rawConfig[p] = config[p];
+						p!="has" && has.add("config-"+p, config[p], 0, booting);
+					}
+				}
+
+				// make sure baseUrl exists
+				if(!req.baseUrl){
+					req.baseUrl = "./";
+				}
+				// make sure baseUrl ends with a slash
+				if(!/\/$/.test(req.baseUrl)){
+					req.baseUrl += "/";
+				}
+
+				// now do the special work for has, packages, packagePaths, paths, aliases, and cache
+
+				for(p in config.has){
+					has.add(p, config.has[p], 0, booting);
+				}
+
+				// for each package found in any packages config item, augment the packs map owned by the loader
+				forEach(config.packages, fixupPackageInfo);
+
+				// for each packagePath found in any packagePaths config item, augment the packageConfig
+				// packagePaths is deprecated; remove in 2.0
+				for(var baseUrl in config.packagePaths){
+					forEach(config.packagePaths[baseUrl], function(packageInfo){
+						var location = baseUrl + "/" + packageInfo;
+						if(isString(packageInfo)){
+							packageInfo = {name:packageInfo};
+						}
+						packageInfo.location = location;
+						fixupPackageInfo(packageInfo);
+					});
+				}
+
+				// notice that computeMapProg treats the dest as a reference; therefore, if/when that variable
+				// is published (see dojo-publish-privates), the published variable will always hold a valid value.
+
+				// this must come after all package processing since package processing may mutate map
+				computeMapProg(mix(map, config.map), mapProgs);
+				forEach(mapProgs, function(item){
+					item[1] = computeMapProg(item[1], []);
+					if(item[0]=="*"){
+						mapProgs.star = item;
+					}
+				});
+
+				// push in any paths and recompute the internal pathmap
+				computeMapProg(mix(paths, config.paths), pathsMapProg);
+
+				// aliases
+				computeAliases(config.aliases, aliases);
+
+				if(booting){
+					delayedModuleConfig.push({config:config.config});
+				}else{
+					for(p in config.config){
+						var module = getModule(p, referenceModule);
+						module.config = mix(module.config || {}, config.config[p]);
+					}
+				}
+
+				// push in any new cache values
+				if(config.cache){
+					consumePendingCacheInsert();
+					pendingCacheInsert = config.cache;
+					//inject now all depencies so cache is available for mapped module
+					consumePendingCacheInsert(0, !!config.cache["*noref"]);
+				}
+
+				signal("config", [config, req.rawConfig]);
+			};
+
+		//
+		// execute the various sniffs; userConfig can override and value
+		//
+
+		if( 0  ||  0 ){
+			// the sniff regex looks for a src attribute ending in dojo.js, optionally preceded with a path.
+			// match[3] returns the path to dojo.js (if any) without the trailing slash. This is used for the
+			// dojo location on CDN deployments and baseUrl when either/both of these are not provided
+			// explicitly in the config data; this is the 1.6- behavior.
+
+			var scripts = doc.getElementsByTagName("script"),
+				i = 0,
+				script, dojoDir, src, match;
+			while(i < scripts.length){
+				script = scripts[i++];
+				if((src = script.getAttribute("src")) && (match = src.match(/(((.*)\/)|^)dojo\.js(\W|$)/i))){
+					// sniff dojoDir and baseUrl
+					dojoDir = match[3] || "";
+					defaultConfig.baseUrl = defaultConfig.baseUrl || dojoDir;
+
+					// remember an insertPointSibling
+					insertPointSibling = script;
+				}
+
+				// sniff configuration on attribute in script element
+				if((src = (script.getAttribute("data-dojo-config") || script.getAttribute("djConfig")))){
+					dojoSniffConfig = req.eval("({ " + src + " })", "data-dojo-config");
+
+					// remember an insertPointSibling
+					insertPointSibling = script;
+				}
+
+				// sniff requirejs attribute
+				if( 0 ){
+					if((src = script.getAttribute("data-main"))){
+						dojoSniffConfig.deps = dojoSniffConfig.deps || [src];
+					}
+				}
+			}
+		}
+
+		if( 0 ){
+			// pass down doh.testConfig from parent as if it were a data-dojo-config
+			try{
+				if(window.parent != window && window.parent.require){
+					var doh = window.parent.require("doh");
+					doh && mix(dojoSniffConfig, doh.testConfig);
+				}
+			}catch(e){}
+		}
+
+		// configure the loader; let the user override defaults
+		req.rawConfig = {};
+		config(defaultConfig, 1);
+
+		// do this before setting userConfig/sniffConfig to allow userConfig/sniff overrides
+		if( 0 ){
+			packs.dojo.location = dojoDir;
+			if(dojoDir){
+				dojoDir += "/";
+			}
+			packs.dijit.location = dojoDir + "../dijit/";
+			packs.dojox.location = dojoDir + "../dojox/";
+		}
+
+		config(userConfig, 1);
+		config(dojoSniffConfig, 1);
+
+	}else{
+		// no config API, assume defaultConfig has everything the loader needs...for the entire lifetime of the application
+		paths = defaultConfig.paths;
+		pathsMapProg = defaultConfig.pathsMapProg;
+		packs = defaultConfig.packs;
+		aliases = defaultConfig.aliases;
+		mapProgs = defaultConfig.mapProgs;
+		modules = defaultConfig.modules;
+		cache = defaultConfig.cache;
+		cacheBust = defaultConfig.cacheBust;
+
+		// remember the default config for other processes (e.g., dojo/config)
+		req.rawConfig = defaultConfig;
+	}
+
+
+	if( 0 ){
+		req.combo = req.combo || {add:noop};
+		var	comboPending = 0,
+			combosPending = [],
+			comboPendingTimer = null;
+	}
+
+
+	// build the loader machinery iaw configuration, including has feature tests
+	var	injectDependencies = function(module){
+			// checkComplete!=0 holds the idle signal; we're not idle if we're injecting dependencies
+			guardCheckComplete(function(){
+				forEach(module.deps, injectModule);
+				if( 0  && comboPending && !comboPendingTimer){
+					comboPendingTimer = setTimeout(function() {
+						comboPending = 0;
+						comboPendingTimer = null;
+						req.combo.done(function(mids, url) {
+							var onLoadCallback= function(){
+								// defQ is a vector of module definitions 1-to-1, onto mids
+								runDefQ(0, mids);
+								checkComplete();
+							};
+							combosPending.push(mids);
+							injectingModule = mids;
+							req.injectUrl(url, onLoadCallback, mids);
+							injectingModule = 0;
+						}, req);
+					}, 0);
+				}
+			});
+		},
+
+		contextRequire = function(a1, a2, a3, referenceModule, contextRequire){
+			var module, syntheticMid;
+			if(isString(a1)){
+				// signature is (moduleId)
+				module = getModule(a1, referenceModule, true);
+				if(module && module.executed){
+					return module.result;
+				}
+				throw makeError("undefinedModule", a1);
+			}
+			if(!isArray(a1)){
+				// a1 is a configuration
+				config(a1, 0, referenceModule);
+
+				// juggle args; (a2, a3) may be (dependencies, callback)
+				a1 = a2;
+				a2 = a3;
+			}
+			if(isArray(a1)){
+				// signature is (requestList [,callback])
+				if(!a1.length){
+					a2 && a2();
+				}else{
+					syntheticMid = "require*" + uid();
+
+					// resolve the request list with respect to the reference module
+					for(var mid, deps = [], i = 0; i < a1.length;){
+						mid = a1[i++];
+						deps.push(getModule(mid, referenceModule));
+					}
+
+					// construct a synthetic module to control execution of the requestList, and, optionally, callback
+					module = mix(makeModuleInfo("", syntheticMid, 0, ""), {
+						injected: arrived,
+						deps: deps,
+						def: a2 || noop,
+						require: referenceModule ? referenceModule.require : req,
+						gc: 1 //garbage collect
+					});
+					modules[module.mid] = module;
+
+					// checkComplete!=0 holds the idle signal; we're not idle if we're injecting dependencies
+					injectDependencies(module);
+
+					// try to immediately execute
+					// if already traversing a factory tree, then strict causes circular dependency to abort the execution; maybe
+					// it's possible to execute this require later after the current traversal completes and avoid the circular dependency.
+					// ...but *always* insist on immediate in synch mode
+					var strict = checkCompleteGuard && legacyMode!=sync;
+					guardCheckComplete(function(){
+						execModule(module, strict);
+					});
+					if(!module.executed){
+						// some deps weren't on board or circular dependency detected and strict; therefore, push into the execQ
+						execQ.push(module);
+					}
+					checkComplete();
+				}
+			}
+			return contextRequire;
+		},
+
+		createRequire = function(module){
+			if(!module){
+				return req;
+			}
+			var result = module.require;
+			if(!result){
+				result = function(a1, a2, a3){
+					return contextRequire(a1, a2, a3, module, result);
+				};
+				module.require = mix(result, req);
+				result.module = module;
+				result.toUrl = function(name){
+					return toUrl(name, module);
+				};
+				result.toAbsMid = function(mid){
+					return toAbsMid(mid, module);
+				};
+				if( 0 ){
+					result.undef = function(mid){
+						req.undef(mid, module);
+					};
+				}
+				if( 0 ){
+					result.syncLoadNls = function(mid){
+						var nlsModuleInfo = getModuleInfo(mid, module),
+							nlsModule = modules[nlsModuleInfo.mid];
+						if(!nlsModule || !nlsModule.executed){
+							cached = cache[nlsModuleInfo.mid] || cache[urlKeyPrefix + nlsModuleInfo.url];
+							if(cached){
+								evalModuleText(cached);
+								nlsModule = modules[nlsModuleInfo.mid];
+							}
+						}
+						return nlsModule && nlsModule.executed && nlsModule.result;
+					};
+				}
+
+			}
+			return result;
+		},
+
+		execQ =
+			// The list of modules that need to be evaluated.
+			[],
+
+		defQ =
+			// The queue of define arguments sent to loader.
+			[],
+
+		waiting =
+			// The set of modules upon which the loader is waiting for definition to arrive
+			{},
+
+		setRequested = function(module){
+			module.injected = requested;
+			waiting[module.mid] = 1;
+			if(module.url){
+				waiting[module.url] = module.pack || 1;
+			}
+			startTimer();
+		},
+
+		setArrived = function(module){
+			module.injected = arrived;
+			delete waiting[module.mid];
+			if(module.url){
+				delete waiting[module.url];
+			}
+			if(isEmpty(waiting)){
+				clearTimer();
+				 0  && legacyMode==xd && (legacyMode = sync);
+			}
+		},
+
+		execComplete = req.idle =
+			// says the loader has completed (or not) its work
+			function(){
+				return !defQ.length && isEmpty(waiting) && !execQ.length && !checkCompleteGuard;
+			},
+
+		runMapProg = function(targetMid, map){
+			// search for targetMid in map; return the map item if found; falsy otherwise
+			if(map){
+			for(var i = 0; i < map.length; i++){
+				if(map[i][2].test(targetMid)){
+					return map[i];
+				}
+			}
+			}
+			return 0;
+		},
+
+		compactPath = function(path){
+			var result = [],
+				segment, lastSegment;
+			path = path.replace(/\\/g, '/').split('/');
+			while(path.length){
+				segment = path.shift();
+				if(segment==".." && result.length && lastSegment!=".."){
+					result.pop();
+					lastSegment = result[result.length - 1];
+				}else if(segment!="."){
+					result.push(lastSegment= segment);
+				} // else ignore "."
+			}
+			return result.join("/");
+		},
+
+		makeModuleInfo = function(pid, mid, pack, url){
+			if( 0 ){
+				var xd= req.isXdUrl(url);
+				return {pid:pid, mid:mid, pack:pack, url:url, executed:0, def:0, isXd:xd, isAmd:!!(xd || (packs[pid] && packs[pid].isAmd))};
+			}else{
+				return {pid:pid, mid:mid, pack:pack, url:url, executed:0, def:0};
+			}
+		},
+
+		getModuleInfo_ = function(mid, referenceModule, packs, modules, baseUrl, mapProgs, pathsMapProg, aliases, alwaysCreate, fromPendingCache){
+			// arguments are passed instead of using lexical variables so that this function my be used independent of the loader (e.g., the builder)
+			// alwaysCreate is useful in this case so that getModuleInfo never returns references to real modules owned by the loader
+			var pid, pack, midInPackage, mapItem, url, result, isRelative, requestedMid;
+			requestedMid = mid;
+			isRelative = /^\./.test(mid);
+			if(/(^\/)|(\:)|(\.js$)/.test(mid) || (isRelative && !referenceModule)){
+				// absolute path or protocol of .js filetype, or relative path but no reference module and therefore relative to page
+				// whatever it is, it's not a module but just a URL of some sort
+				// note: pid===0 indicates the routine is returning an unmodified mid
+
+				return makeModuleInfo(0, mid, 0, mid);
+			}else{
+				// relative module ids are relative to the referenceModule; get rid of any dots
+				mid = compactPath(isRelative ? (referenceModule.mid + "/../" + mid) : mid);
+				if(/^\./.test(mid)){
+					throw makeError("irrationalPath", mid);
+				}
+				// at this point, mid is an absolute mid
+
+				// map the mid
+				if(!fromPendingCache && !isRelative && mapProgs.star){
+					mapItem = runMapProg(mid, mapProgs.star[1]);
+				}
+				if(!mapItem && referenceModule){
+					mapItem = runMapProg(referenceModule.mid, mapProgs);
+					mapItem = mapItem && runMapProg(mid, mapItem[1]);
+				}
+
+				if(mapItem){
+					mid = mapItem[1] + mid.substring(mapItem[3]);
+					}
+
+				match = mid.match(/^([^\/]+)(\/(.+))?$/);
+				pid = match ? match[1] : "";
+				if((pack = packs[pid])){
+					mid = pid + "/" + (midInPackage = (match[3] || pack.main));
+				}else{
+					pid = "";
+				}
+
+				// search aliases
+				var candidateLength = 0,
+					candidate = 0;
+				forEach(aliases, function(pair){
+					var match = mid.match(pair[0]);
+					if(match && match.length>candidateLength){
+						candidate = isFunction(pair[1]) ? mid.replace(pair[0], pair[1]) : pair[1];
+					}
+				});
+				if(candidate){
+					return getModuleInfo_(candidate, 0, packs, modules, baseUrl, mapProgs, pathsMapProg, aliases, alwaysCreate);
+				}
+
+				result = modules[mid];
+				if(result){
+					return alwaysCreate ? makeModuleInfo(result.pid, result.mid, result.pack, result.url) : modules[mid];
+				}
+			}
+			// get here iff the sought-after module does not yet exist; therefore, we need to compute the URL given the
+			// fully resolved (i.e., all relative indicators and package mapping resolved) module id
+
+			// note: pid!==0 indicates the routine is returning a url that has .js appended unmodified mid
+			mapItem = runMapProg(mid, pathsMapProg);
+			if(mapItem){
+				url = mapItem[1] + mid.substring(mapItem[3]);
+			}else if(pid){
+				url = pack.location + "/" + midInPackage;
+			}else if( 0 ){
+				url = "../" + mid;
+			}else{
+				url = mid;
+			}
+			// if result is not absolute, add baseUrl
+			if(!(/(^\/)|(\:)/.test(url))){
+				url = baseUrl + url;
+			}
+			url += ".js";
+			return makeModuleInfo(pid, mid, pack, compactPath(url));
+		},
+
+		getModuleInfo = function(mid, referenceModule, fromPendingCache){
+			return getModuleInfo_(mid, referenceModule, packs, modules, req.baseUrl, mapProgs, pathsMapProg, aliases, undefined, fromPendingCache);
+		},
+
+		resolvePluginResourceId = function(plugin, prid, referenceModule){
+			return plugin.normalize ? plugin.normalize(prid, function(mid){return toAbsMid(mid, referenceModule);}) : toAbsMid(prid, referenceModule);
+		},
+
+		dynamicPluginUidGenerator = 0,
+
+		getModule = function(mid, referenceModule, immediate){
+			// compute and optionally construct (if necessary) the module implied by the mid with respect to referenceModule
+			var match, plugin, prid, result;
+			match = mid.match(/^(.+?)\!(.*)$/);
+			if(match){
+				// name was <plugin-module>!<plugin-resource-id>
+				plugin = getModule(match[1], referenceModule, immediate);
+
+				if( 0  && legacyMode == sync && !plugin.executed){
+					injectModule(plugin);
+					if(plugin.injected===arrived && !plugin.executed){
+						guardCheckComplete(function(){
+							execModule(plugin);
+						});
+					}
+					if(plugin.executed){
+						promoteModuleToPlugin(plugin);
+					}else{
+						// we are in xdomain mode for some reason
+						execQ.unshift(plugin);
+					}
+				}
+
+
+
+				if(plugin.executed === executed && !plugin.load){
+					// executed the module not knowing it was a plugin
+					promoteModuleToPlugin(plugin);
+				}
+
+				// if the plugin has not been loaded, then can't resolve the prid and  must assume this plugin is dynamic until we find out otherwise
+				if(plugin.load){
+					prid = resolvePluginResourceId(plugin, match[2], referenceModule);
+					mid = (plugin.mid + "!" + (plugin.dynamic ? ++dynamicPluginUidGenerator + "!" : "") + prid);
+				}else{
+					prid = match[2];
+					mid = plugin.mid + "!" + (++dynamicPluginUidGenerator) + "!waitingForPlugin";
+				}
+				result = {plugin:plugin, mid:mid, req:createRequire(referenceModule), prid:prid};
+			}else{
+				result = getModuleInfo(mid, referenceModule);
+			}
+			return modules[result.mid] || (!immediate && (modules[result.mid] = result));
+		},
+
+		toAbsMid = req.toAbsMid = function(mid, referenceModule){
+			return getModuleInfo(mid, referenceModule).mid;
+		},
+
+		toUrl = req.toUrl = function(name, referenceModule){
+			var moduleInfo = getModuleInfo(name+"/x", referenceModule),
+				url= moduleInfo.url;
+			return fixupUrl(moduleInfo.pid===0 ?
+				// if pid===0, then name had a protocol or absolute path; either way, toUrl is the identify function in such cases
+				name :
+				// "/x.js" since getModuleInfo automatically appends ".js" and we appended "/x" to make name look like a module id
+				url.substring(0, url.length-5)
+			);
+		},
+
+		nonModuleProps = {
+			injected: arrived,
+			executed: executed,
+			def: nonmodule,
+			result: nonmodule
+		},
+
+		makeCjs = function(mid){
+			return modules[mid] = mix({mid:mid}, nonModuleProps);
+		},
+
+		cjsRequireModule = makeCjs("require"),
+		cjsExportsModule = makeCjs("exports"),
+		cjsModuleModule = makeCjs("module"),
+
+		runFactory = function(module, args){
+			req.trace("loader-run-factory", [module.mid]);
+			var factory = module.def,
+				result;
+			 0  && syncExecStack.unshift(module);
+			if( 0 ){
+				try{
+					result= isFunction(factory) ? factory.apply(null, args) : factory;
+				}catch(e){
+					signal(error, module.result = makeError("factoryThrew", [module, e]));
+				}
+			}else{
+				result= isFunction(factory) ? factory.apply(null, args) : factory;
+			}
+			module.result = result===undefined && module.cjs ? module.cjs.exports : result;
+			 0  && syncExecStack.shift(module);
+		},
+
+		abortExec = {},
+
+		defOrder = 0,
+
+		promoteModuleToPlugin = function(pluginModule){
+			var plugin = pluginModule.result;
+			pluginModule.dynamic = plugin.dynamic;
+			pluginModule.normalize = plugin.normalize;
+			pluginModule.load = plugin.load;
+			return pluginModule;
+		},
+
+		resolvePluginLoadQ = function(plugin){
+			// plugins is a newly executed module that has a loadQ waiting to run
+
+			// step 1: traverse the loadQ and fixup the mid and prid; remember the map from original mid to new mid
+			// recall the original mid was created before the plugin was on board and therefore it was impossible to
+			// compute the final mid; accordingly, prid may or may not change, but the mid will definitely change
+			var map = {};
+			forEach(plugin.loadQ, function(pseudoPluginResource){
+				// manufacture and insert the real module in modules
+				var prid = resolvePluginResourceId(plugin, pseudoPluginResource.prid, pseudoPluginResource.req.module),
+					mid = plugin.dynamic ? pseudoPluginResource.mid.replace(/waitingForPlugin$/, prid) : (plugin.mid + "!" + prid),
+					pluginResource = mix(mix({}, pseudoPluginResource), {mid:mid, prid:prid, injected:0});
+				if(!modules[mid] || !modules[mid].injected /*for require.undef*/){
+					// create a new (the real) plugin resource and inject it normally now that the plugin is on board
+					injectPlugin(modules[mid] = pluginResource);
+				} // else this was a duplicate request for the same (plugin, rid) for a nondynamic plugin
+
+				// pluginResource is really just a placeholder with the wrong mid (because we couldn't calculate it until the plugin was on board)
+				// mark is as arrived and delete it from modules; the real module was requested above
+				map[pseudoPluginResource.mid] = modules[mid];
+				setArrived(pseudoPluginResource);
+				delete modules[pseudoPluginResource.mid];
+			});
+			plugin.loadQ = 0;
+
+			// step2: replace all references to any placeholder modules with real modules
+			var substituteModules = function(module){
+				for(var replacement, deps = module.deps || [], i = 0; i<deps.length; i++){
+					replacement = map[deps[i].mid];
+					if(replacement){
+						deps[i] = replacement;
+					}
+				}
+			};
+			for(var p in modules){
+				substituteModules(modules[p]);
+			}
+			forEach(execQ, substituteModules);
+		},
+
+		finishExec = function(module){
+			req.trace("loader-finish-exec", [module.mid]);
+			module.executed = executed;
+			module.defOrder = defOrder++;
+			 0  && forEach(module.provides, function(cb){ cb(); });
+			if(module.loadQ){
+				// the module was a plugin
+				promoteModuleToPlugin(module);
+				resolvePluginLoadQ(module);
+			}
+			// remove all occurrences of this module from the execQ
+			for(i = 0; i < execQ.length;){
+				if(execQ[i] === module){
+					execQ.splice(i, 1);
+				}else{
+					i++;
+				}
+			}
+			// delete references to synthetic modules
+			if (/^require\*/.test(module.mid)) {
+				delete modules[module.mid];
+			}
+		},
+
+		circleTrace = [],
+
+		execModule = function(module, strict){
+			// run the dependency vector, then run the factory for module
+			if(module.executed === executing){
+				req.trace("loader-circular-dependency", [circleTrace.concat(module.mid).join("->")]);
+				return (!module.def || strict) ? abortExec :  (module.cjs && module.cjs.exports);
+			}
+			// at this point the module is either not executed or fully executed
+
+
+			if(!module.executed){
+				if(!module.def){
+					return abortExec;
+				}
+				var mid = module.mid,
+					deps = module.deps || [],
+					arg, argResult,
+					args = [],
+					i = 0;
+
+				if( 0 ){
+					circleTrace.push(mid);
+					req.trace("loader-exec-module", ["exec", circleTrace.length, mid]);
+				}
+
+				// for circular dependencies, assume the first module encountered was executed OK
+				// modules that circularly depend on a module that has not run its factory will get
+				// the pre-made cjs.exports===module.result. They can take a reference to this object and/or
+				// add properties to it. When the module finally runs its factory, the factory can
+				// read/write/replace this object. Notice that so long as the object isn't replaced, any
+				// reference taken earlier while walking the deps list is still valid.
+				module.executed = executing;
+				while((arg = deps[i++])){
+					argResult = ((arg === cjsRequireModule) ? createRequire(module) :
+									((arg === cjsExportsModule) ? module.cjs.exports :
+										((arg === cjsModuleModule) ? module.cjs :
+											execModule(arg, strict))));
+					if(argResult === abortExec){
+						module.executed = 0;
+						req.trace("loader-exec-module", ["abort", mid]);
+						 0  && circleTrace.pop();
+						return abortExec;
+					}
+					args.push(argResult);
+				}
+				runFactory(module, args);
+				finishExec(module);
+				 0  && circleTrace.pop();
+			}
+			// at this point the module is guaranteed fully executed
+
+			return module.result;
+		},
+
+
+		checkCompleteGuard = 0,
+
+		guardCheckComplete = function(proc){
+			try{
+				checkCompleteGuard++;
+				proc();
+			}catch(e){
+				// https://bugs.dojotoolkit.org/ticket/16617
+				throw e;
+			}finally{
+				checkCompleteGuard--;
+			}
+			if(execComplete()){
+				signal("idle", []);
+			}
+		},
+
+		checkComplete = function(){
+			// keep going through the execQ as long as at least one factory is executed
+			// plugins, recursion, cached modules all make for many execution path possibilities
+			if(checkCompleteGuard){
+				return;
+			}
+			guardCheckComplete(function(){
+				checkDojoRequirePlugin();
+				for(var currentDefOrder, module, i = 0; i < execQ.length;){
+					currentDefOrder = defOrder;
+					module = execQ[i];
+					execModule(module);
+					if(currentDefOrder!=defOrder){
+						// defOrder was bumped one or more times indicating something was executed (note, this indicates
+						// the execQ was modified, maybe a lot (for example a later module causes an earlier module to execute)
+						checkDojoRequirePlugin();
+						i = 0;
+					}else{
+						// nothing happened; check the next module in the exec queue
+						i++;
+					}
+				}
+			});
+		},
+
+		fixupUrl= typeof userConfig.fixupUrl == "function" ? userConfig.fixupUrl : function(url){
+			url += ""; // make sure url is a Javascript string (some paths may be a Java string)
+			return url + (cacheBust ? ((/\?/.test(url) ? "&" : "?") + cacheBust) : "");
+		};
+
+
+
+	if( 0 ){
+		req.undef = function(moduleId, referenceModule){
+			// In order to reload a module, it must be undefined (this routine) and then re-requested.
+			// This is useful for testing frameworks (at least).
+			var module = getModule(moduleId, referenceModule);
+			setArrived(module);
+			mix(module, {def:0, executed:0, injected:0, node:0, load:0});
+		};
+	}
+
+	if( false ){
+		if( 0 ===undefined){
+			 0 && has.add("dojo-loader-eval-hint-url", 1);
+		}
+
+		var	injectPlugin = function(
+				module
+			){
+				// injects the plugin module given by module; may have to inject the plugin itself
+				var plugin = module.plugin;
+
+				if(plugin.executed === executed && !plugin.load){
+					// executed the module not knowing it was a plugin
+					promoteModuleToPlugin(plugin);
+				}
+
+				var onLoad = function(def){
+						module.result = def;
+						setArrived(module);
+						finishExec(module);
+						checkComplete();
+					};
+
+				if(plugin.load){
+					plugin.load(module.prid, module.req, onLoad);
+				}else if(plugin.loadQ){
+					plugin.loadQ.push(module);
+				}else{
+					// the unshift instead of push is important: we don't want plugins to execute as
+					// dependencies of some other module because this may cause circles when the plugin
+					// loadQ is run; also, generally, we want plugins to run early since they may load
+					// several other modules and therefore can potentially unblock many modules
+					plugin.loadQ = [module];
+					execQ.unshift(plugin);
+					injectModule(plugin);
+				}
+			},
+
+			// for IE, injecting a module may result in a recursive execution if the module is in the cache
+
+			cached = 0,
+
+			injectingModule = 0,
+
+			injectingCachedModule = 0,
+
+			evalModuleText = function(text, module){
+				// see def() for the injectingCachedModule bracket; it simply causes a short, safe circuit
+				if( 0 ){
+					text = text.replace(/(["'])use strict\1/g, '');
+				}
+				injectingCachedModule = 1;
+				if( 0 ){
+					try{
+						if(text===cached){
+							cached.call(null);
+						}else{
+							req.eval(text,  0  ? module.url : module.mid);
+						}
+					}catch(e){
+						signal(error, makeError("evalModuleThrew", module));
+					}
+				}else{
+					if(text===cached){
+						cached.call(null);
+					}else{
+						req.eval(text,  0  ? module.url : module.mid);
+					}
+				}
+				injectingCachedModule = 0;
+			},
+
+			injectModule = function(module){
+				// Inject the module. In the browser environment, this means appending a script element into
+				// the document; in other environments, it means loading a file.
+				//
+				// If in synchronous mode, then get the module synchronously if it's not xdomainLoading.
+
+				var mid = module.mid,
+					url = module.url;
+				if(module.executed || module.injected || waiting[mid] || (module.url && ((module.pack && waiting[module.url]===module.pack) || waiting[module.url]==1))){
+					return;
+				}
+				setRequested(module);
+
+				if( 0 ){
+					var viaCombo = 0;
+					if(module.plugin && module.plugin.isCombo){
+						// a combo plugin; therefore, must be handled by combo service
+						// the prid should have already been converted to a URL (if required by the plugin) during
+						// the normalize process; in any event, there is no way for the loader to know how to
+						// to the conversion; therefore the third argument is zero
+						req.combo.add(module.plugin.mid, module.prid, 0, req);
+						viaCombo = 1;
+					}else if(!module.plugin){
+						viaCombo = req.combo.add(0, module.mid, module.url, req);
+					}
+					if(viaCombo){
+						comboPending= 1;
+						return;
+					}
+				}
+
+				if(module.plugin){
+					injectPlugin(module);
+					return;
+				} // else a normal module (not a plugin)
+
+
+				var onLoadCallback = function(){
+					runDefQ(module);
+					if(module.injected !== arrived){
+						// the script that contained the module arrived and has been executed yet
+						// nothing was added to the defQ (so it wasn't an AMD module) and the module
+						// wasn't marked as arrived by dojo.provide (so it wasn't a v1.6- module);
+						// therefore, it must not have been a module; adjust state accordingly
+						if( 0 ){
+							signal(error, makeError("noDefine", module));
+							return;
+						}
+						setArrived(module);
+						mix(module, nonModuleProps);
+						req.trace("loader-define-nonmodule", [module.url]);
+					}
+
+					if( 0  && legacyMode){
+						// must call checkComplete even in for sync loader because we may be in xdomainLoading mode;
+						// but, if xd loading, then don't call checkComplete until out of the current sync traversal
+						// in order to preserve order of execution of the dojo.required modules
+						!syncExecStack.length && checkComplete();
+					}else{
+						checkComplete();
+					}
+				};
+				cached = cache[mid] || cache[urlKeyPrefix + module.url];
+				if(cached){
+					req.trace("loader-inject", ["cache", module.mid, url]);
+					evalModuleText(cached, module);
+					onLoadCallback();
+					return;
+				}
+				if( 0  && legacyMode){
+					if(module.isXd){
+						// switch to async mode temporarily; if current legacyMode!=sync, then is must be one of {legacyAsync, xd, false}
+						legacyMode==sync && (legacyMode = xd);
+						// fall through and load via script injection
+					}else if(module.isAmd && legacyMode!=sync){
+						// fall through and load via script injection
+					}else{
+						// mode may be sync, xd/legacyAsync, or async; module may be AMD or legacy; but module is always located on the same domain
+						var xhrCallback = function(text){
+							if(legacyMode==sync){
+								// the top of syncExecStack gives the current synchronously executing module; the loader needs
+								// to know this if it has to switch to async loading in the middle of evaluating a legacy module
+								// this happens when a modules dojo.require's a module that must be loaded async because it's xdomain
+								// (using unshift/shift because there is no back() methods for Javascript arrays)
+								syncExecStack.unshift(module);
+								evalModuleText(text, module);
+								syncExecStack.shift();
+
+								// maybe the module was an AMD module
+								runDefQ(module);
+
+								// legacy modules never get to defineModule() => cjs and injected never set; also evaluation implies executing
+								if(!module.cjs){
+									setArrived(module);
+									finishExec(module);
+								}
+
+								if(module.finish){
+									// while synchronously evaluating this module, dojo.require was applied referencing a module
+									// that had to be loaded async; therefore, the loader stopped answering all dojo.require
+									// requests so they could be answered completely in the correct sequence; module.finish gives
+									// the list of dojo.requires that must be re-applied once all target modules are available;
+									// make a synthetic module to execute the dojo.require's in the correct order
+
+									// compute a guaranteed-unique mid for the synthetic finish module; remember the finish vector; remove it from the reference module
+									// TODO: can we just leave the module.finish...what's it hurting?
+									var finishMid = mid + "*finish",
+										finish = module.finish;
+									delete module.finish;
+
+									def(finishMid, ["dojo", ("dojo/require!" + finish.join(",")).replace(/\./g, "/")], function(dojo){
+										forEach(finish, function(mid){ dojo.require(mid); });
+									});
+									// unshift, not push, which causes the current traversal to be reattempted from the top
+									execQ.unshift(getModule(finishMid));
+								}
+								onLoadCallback();
+							}else{
+								text = transformToAmd(module, text);
+								if(text){
+									evalModuleText(text, module);
+									onLoadCallback();
+								}else{
+									// if transformToAmd returned falsy, then the module was already AMD and it can be script-injected
+									// do so to improve debugability(even though it means another download...which probably won't happen with a good browser cache)
+									injectingModule = module;
+									req.injectUrl(fixupUrl(url), onLoadCallback, module);
+									injectingModule = 0;
+								}
+							}
+						};
+
+						req.trace("loader-inject", ["xhr", module.mid, url, legacyMode!=sync]);
+						if( 0 ){
+							try{
+								req.getText(url, legacyMode!=sync, xhrCallback);
+							}catch(e){
+								signal(error, makeError("xhrInjectFailed", [module, e]));
+							}
+						}else{
+							req.getText(url, legacyMode!=sync, xhrCallback);
+						}
+						return;
+					}
+				} // else async mode or fell through in xdomain loading mode; either way, load by script injection
+				req.trace("loader-inject", ["script", module.mid, url]);
+				injectingModule = module;
+				req.injectUrl(fixupUrl(url), onLoadCallback, module);
+				injectingModule = 0;
+			},
+
+			defineModule = function(module, deps, def){
+				req.trace("loader-define-module", [module.mid, deps]);
+
+				if( 0  && module.plugin && module.plugin.isCombo){
+					// the module is a plugin resource loaded by the combo service
+					// note: check for module.plugin should be enough since normal plugin resources should
+					// not follow this path; module.plugin.isCombo is future-proofing belt and suspenders
+					module.result = isFunction(def) ? def() : def;
+					setArrived(module);
+					finishExec(module);
+					return module;
+				}
+
+				var mid = module.mid;
+				if(module.injected === arrived){
+					signal(error, makeError("multipleDefine", module));
+					return module;
+				}
+				mix(module, {
+					deps: deps,
+					def: def,
+					cjs: {
+						id: module.mid,
+						uri: module.url,
+						exports: (module.result = {}),
+						setExports: function(exports){
+							module.cjs.exports = exports;
+						},
+						config:function(){
+							return module.config;
+						}
+					}
+				});
+
+				// resolve deps with respect to this module
+				for(var i = 0; deps[i]; i++){
+					deps[i] = getModule(deps[i], module);
+				}
+
+				if( 0  && legacyMode && !waiting[mid]){
+					// the module showed up without being asked for; it was probably in a <script> element
+					injectDependencies(module);
+					execQ.push(module);
+					checkComplete();
+				}
+				setArrived(module);
+
+				if(!isFunction(def) && !deps.length){
+					module.result = def;
+					finishExec(module);
+				}
+
+				return module;
+			},
+
+			runDefQ = function(referenceModule, mids){
+				// defQ is an array of [id, dependencies, factory]
+				// mids (if any) is a vector of mids given by a combo service
+				var definedModules = [],
+					module, args;
+				while(defQ.length){
+					args = defQ.shift();
+					mids && (args[0]= mids.shift());
+					// explicit define indicates possible multiple modules in a single file; delay injecting dependencies until defQ fully
+					// processed since modules earlier in the queue depend on already-arrived modules that are later in the queue
+					// TODO: what if no args[0] and no referenceModule
+					module = (args[0] && getModule(args[0])) || referenceModule;
+					definedModules.push([module, args[1], args[2]]);
+				}
+				consumePendingCacheInsert(referenceModule);
+				forEach(definedModules, function(args){
+					injectDependencies(defineModule.apply(null, args));
+				});
+			};
+	}
+
+	var timerId = 0,
+		clearTimer = noop,
+		startTimer = noop;
+	if( 0 ){
+		// Timer machinery that monitors how long the loader is waiting and signals an error when the timer runs out.
+		clearTimer = function(){
+			timerId && clearTimeout(timerId);
+			timerId = 0;
+		};
+
+		startTimer = function(){
+			clearTimer();
+			if(req.waitms){
+				timerId = global.setTimeout(function(){
+					clearTimer();
+					signal(error, makeError("timeout", waiting));
+				}, req.waitms);
+			}
+		};
+	}
+
+	if ( 0 ) {
+		// Test for IE's different way of signaling when scripts finish loading.  Note that according to
+		// http://bugs.dojotoolkit.org/ticket/15096#comment:14, IE9 also needs to follow the
+		// IE specific code path even though it has an addEventListener() method.
+		// Unknown if special path needed on IE10+, which also has a document.attachEvent() method.
+		// Should evaluate to false for Opera and Windows 8 apps, even though they document.attachEvent()
+		//  is defined in both those environments.
+		 0 && has.add("ie-event-behavior", doc.attachEvent && typeof Windows === "undefined" &&
+			(typeof opera === "undefined" || opera.toString() != "[object Opera]"));
+	}
+
+	if( 0  && ( false  ||  1 )){
+		var domOn = function(node, eventName, ieEventName, handler){
+				// Add an event listener to a DOM node using the API appropriate for the current browser;
+				// return a function that will disconnect the listener.
+				if(! 0 ){
+					node.addEventListener(eventName, handler, false);
+					return function(){
+						node.removeEventListener(eventName, handler, false);
+					};
+				}else{
+					node.attachEvent(ieEventName, handler);
+					return function(){
+						node.detachEvent(ieEventName, handler);
+					};
+				}
+			},
+			windowOnLoadListener = domOn(window, "load", "onload", function(){
+				req.pageLoaded = 1;
+				// https://bugs.dojotoolkit.org/ticket/16248
+				try{
+					doc.readyState!="complete" && (doc.readyState = "complete");
+				}catch(e){
+				}
+				windowOnLoadListener();
+			});
+
+		if( false ){
+			// if the loader is on the page, there must be at least one script element
+			// getting its parent and then doing insertBefore solves the "Operation Aborted"
+			// error in IE from appending to a node that isn't properly closed; see
+			// dojo/tests/_base/loader/requirejs/simple-badbase.html for an example
+			// don't use scripts with type dojo/... since these may be removed; see #15809
+			// prefer to use the insertPoint computed during the config sniff in case a script is removed; see #16958
+			var scripts = doc.getElementsByTagName("script"),
+				i = 0,
+				script;
+			while(!insertPointSibling){
+				if(!/^dojo/.test((script = scripts[i++]) && script.type)){
+					insertPointSibling= script;
+				}
+			}
+
+			req.injectUrl = function(url, callback, owner){
+				// insert a script element to the insert-point element with src=url;
+				// apply callback upon detecting the script has loaded.
+
+				var node = owner.node = doc.createElement("script"),
+					onLoad = function(e){
+						e = e || window.event;
+						var node = e.target || e.srcElement;
+						if(e.type === "load" || /complete|loaded/.test(node.readyState)){
+							loadDisconnector();
+							errorDisconnector();
+							callback && callback();
+						}
+					},
+					loadDisconnector = domOn(node, "load", "onreadystatechange", onLoad),
+					errorDisconnector = domOn(node, "error", "onerror", function(e){
+						loadDisconnector();
+						errorDisconnector();
+						signal(error, makeError("scriptError", [url, e]));
+					});
+
+				node.type = "text/javascript";
+				node.charset = "utf-8";
+				node.src = url;
+				insertPointSibling.parentNode.insertBefore(node, insertPointSibling);
+				return node;
+			};
+		}
+	}
+
+	if( 0 ){
+		req.log = function(){
+			try{
+				for(var i = 0; i < arguments.length; i++){
+					console.log(arguments[i]);
+				}
+			}catch(e){}
+		};
+	}else{
+		req.log = noop;
+	}
+
+	if( 0 ){
+		var trace = req.trace = function(
+			group,	// the trace group to which this application belongs
+			args	// the contents of the trace
+		){
+			///
+			// Tracing interface by group.
+			//
+			// Sends the contents of args to the console iff (req.trace.on && req.trace[group])
+
+			if(trace.on && trace.group[group]){
+				signal("trace", [group, args]);
+				for(var arg, dump = [], text= "trace:" + group + (args.length ? (":" + args[0]) : ""), i= 1; i<args.length;){
+					arg = args[i++];
+					if(isString(arg)){
+						text += ", " + arg;
+					}else{
+						dump.push(arg);
+					}
+				}
+				req.log(text);
+				dump.length && dump.push(".");
+				req.log.apply(req, dump);
+			}
+		};
+		mix(trace, {
+			on:1,
+			group:{},
+			set:function(group, value){
+				if(isString(group)){
+					trace.group[group]= value;
+				}else{
+					mix(trace.group, group);
+				}
+			}
+		});
+		trace.set(mix(mix(mix({}, defaultConfig.trace), userConfig.trace), dojoSniffConfig.trace));
+		on("config", function(config){
+			config.trace && trace.set(config.trace);
+		});
+	}else{
+		req.trace = noop;
+	}
+
+	var def = function(
+		mid,		  //(commonjs.moduleId, optional)
+		dependencies, //(array of commonjs.moduleId, optional) list of modules to be loaded before running factory
+		factory		  //(any)
+	){
+		///
+		// Advises the loader of a module factory. //Implements http://wiki.commonjs.org/wiki/Modules/AsynchronousDefinition.
+		///
+		//note
+		// CommonJS factory scan courtesy of http://requirejs.org
+
+		var arity = arguments.length,
+			defaultDeps = ["require", "exports", "module"],
+			// the predominate signature...
+			args = [0, mid, dependencies];
+		if(arity==1){
+			args = [0, (isFunction(mid) ? defaultDeps : []), mid];
+		}else if(arity==2 && isString(mid)){
+			args = [mid, (isFunction(dependencies) ? defaultDeps : []), dependencies];
+		}else if(arity==3){
+			args = [mid, dependencies, factory];
+		}
+
+		if( 0  && args[1]===defaultDeps){
+			args[2].toString()
+				.replace(/(\/\*([\s\S]*?)\*\/|\/\/(.*)$)/mg, "")
+				.replace(/require\(["']([\w\!\-_\.\/]+)["']\)/g, function(match, dep){
+				args[1].push(dep);
+			});
+		}
+
+		req.trace("loader-define", args.slice(0, 2));
+		var targetModule = args[0] && getModule(args[0]),
+			module;
+		if(targetModule && !waiting[targetModule.mid]){
+			// given a mid that hasn't been requested; therefore, defined through means other than injecting
+			// consequent to a require() or define() application; examples include defining modules on-the-fly
+			// due to some code path or including a module in a script element. In any case,
+			// there is no callback waiting to finish processing and nothing to trigger the defQ and the
+			// dependencies are never requested; therefore, do it here.
+			injectDependencies(defineModule(targetModule, args[1], args[2]));
+		}else if(! 0  || ! 1  || injectingCachedModule){
+			// not IE path: anonymous module and therefore must have been injected; therefore, onLoad will fire immediately
+			// after script finishes being evaluated and the defQ can be run from that callback to detect the module id
+			defQ.push(args);
+		}else{
+			// IE path: possibly anonymous module and therefore injected; therefore, cannot depend on 1-to-1,
+			// in-order exec of onLoad with script eval (since it's IE) and must manually detect here
+			targetModule = targetModule || injectingModule;
+			if(!targetModule){
+				for(mid in waiting){
+					module = modules[mid];
+					if(module && module.node && module.node.readyState === 'interactive'){
+						targetModule = module;
+						break;
+					}
+				}
+				if( 0  && !targetModule){
+					for(var i = 0; i<combosPending.length; i++){
+						targetModule = combosPending[i];
+						if(targetModule.node && targetModule.node.readyState === 'interactive'){
+							break;
+						}
+						targetModule= 0;
+					}
+				}
+			}
+			if( 0  && isArray(targetModule)){
+				injectDependencies(defineModule(getModule(targetModule.shift()), args[1], args[2]));
+				if(!targetModule.length){
+					combosPending.splice(i, 1);
+				}
+			}else if(targetModule){
+				consumePendingCacheInsert(targetModule);
+				injectDependencies(defineModule(targetModule, args[1], args[2]));
+			}else{
+				signal(error, makeError("ieDefineFailed", args[0]));
+			}
+			checkComplete();
+		}
+	};
+	def.amd = {
+		vendor:"dojotoolkit.org"
+	};
+
+	if( 0 ){
+		req.def = def;
+	}
+
+	// allow config to override default implementation of named functions; this is useful for
+	// non-browser environments, e.g., overriding injectUrl, getText, log, etc. in node.js, Rhino, etc.
+	// also useful for testing and monkey patching loader
+	mix(mix(req, defaultConfig.loaderPatch), userConfig.loaderPatch);
+
+	// now that req is fully initialized and won't change, we can hook it up to the error signal
+	on(error, function(arg){
+		try{
+			console.error(arg);
+			if(arg instanceof Error){
+				for(var p in arg){
+					console.log(p + ":", arg[p]);
+				}
+				console.log(".");
+			}
+		}catch(e){}
+	});
+
+	// always publish these
+	mix(req, {
+		uid:uid,
+		cache:cache,
+		packs:packs
+	});
+
+
+	if( 0 ){
+		mix(req, {
+			// these may be interesting to look at when debugging
+			paths:paths,
+			aliases:aliases,
+			modules:modules,
+			legacyMode:legacyMode,
+			execQ:execQ,
+			defQ:defQ,
+			waiting:waiting,
+
+			// these are used for testing
+			// TODO: move testing infrastructure to a different has feature
+			packs:packs,
+			mapProgs:mapProgs,
+			pathsMapProg:pathsMapProg,
+			listenerQueues:listenerQueues,
+
+			// these are used by the builder (at least)
+			computeMapProg:computeMapProg,
+			computeAliases:computeAliases,
+			runMapProg:runMapProg,
+			compactPath:compactPath,
+			getModuleInfo:getModuleInfo_
+		});
+	}
+
+	// the loader can be defined exactly once; look for global define which is the symbol AMD loaders are
+	// *required* to define (as opposed to require, which is optional)
+	if(global.define){
+		if( 0 ){
+			signal(error, makeError("defineAlreadyDefined", 0));
+		}
+		return;
+	}else{
+		global.define = def;
+		global.require = req;
+		if( 0 ){
+			require = req;
+		}
+	}
+
+	if( 0  && req.combo && req.combo.plugins){
+		var plugins = req.combo.plugins,
+			pluginName;
+		for(pluginName in plugins){
+			mix(mix(getModule(pluginName), plugins[pluginName]), {isCombo:1, executed:"executed", load:1});
+		}
+	}
+
+	if( 1 ){
+		forEach(delayedModuleConfig, function(c){ config(c); });
+		var bootDeps = dojoSniffConfig.deps ||	userConfig.deps || defaultConfig.deps,
+			bootCallback = dojoSniffConfig.callback || userConfig.callback || defaultConfig.callback;
+		req.boot = (bootDeps || bootCallback) ? [bootDeps || [], bootCallback] : 0;
+	}
+	if(! 1 ){
+		!req.async && req(["dojo"]);
+		req.boot && req.apply(null, req.boot);
+	}
+})
+.call(this, userConfig, defaultConfig);};
\ No newline at end of file
diff --git a/build/glob-loader.js b/build/glob-loader.js
new file mode 100644
index 0000000000..aff8fc6c9a
--- /dev/null
+++ b/build/glob-loader.js
@@ -0,0 +1,68 @@
+const glob = require('glob')
+const path = require('path')
+
+const {getPluginName} = require('./plugin-util')
+
+const blacklist = {};
+`
+JBrowse/main
+`
+.trim().split(/\s+/).forEach(mid => blacklist[mid] = 1)
+
+const format = 'AMD';
+
+function log(msg) {
+    console.log(`jbrowse-glob-loader: ${msg}`)
+}
+
+const JBrowseModuleIds =
+    glob.sync('src/JBrowse/**/*.js')
+    .map(f=>f.replace('src/','').replace('.js',''))
+    .filter( mid => ! /\.profile$/.test(mid) )
+    .reverse()
+
+log(`building ${JBrowseModuleIds.length} JBrowse modules`)
+
+const pluginModuleIds =
+    glob.sync('plugins/*/') // local plugins
+    .concat(glob.sync('node_modules/*-jbrowse-plugin/')) // unscoped modules
+    .concat(glob.sync('node_modules/@*/*-jbrowse-plugin/')) // scoped modules
+    .map( pluginDir => {
+        let pluginName = getPluginName(pluginDir)
+        return glob.sync(pluginDir+'/js/**/*.js')
+        .map( f => {
+            let mid = f.replace(pluginDir,pluginName+'/')
+                .replace('.js','')
+                .replace('/js/','/')
+            return mid
+        })
+    })
+    .reduce((a,b) => a.concat(b), [])
+    .reverse()
+    .filter( mid => ! /\.profile$/.test(mid) )
+
+// log out all the module IDs from plugins
+pluginModuleIds.forEach( mid => log(`adding plugin module ${mid}`) )
+
+const mids = JBrowseModuleIds.concat(pluginModuleIds)
+
+// tiny Webpack Loader that replaces "//! webpackRequireGlob" expressions with a big bunch of requires
+module.exports = function(content,map,meta) {
+    return content.replace(
+        '//!! glob-loader, please include every JBrowse and plugin module here',
+        function (match) {
+            return mids.map( (mid,i) => {
+                let blacklisted = '';
+                if (blacklist[mid]) {
+                    blacklisted = '//SKIPPED '
+                    log(`skipping entry point module ${mid}`)
+                }
+                let code =
+                    format === 'CommonJS' ? `${blacklisted}var __webpackRequireGlob${i} = require('./${mid}') // ${mid}` :
+                                            `${blacklisted} '${mid}',`
+                //console.log(code)
+                return code
+            }).join('\n')
+        }
+    )
+}
diff --git a/build/plugin-util.js b/build/plugin-util.js
new file mode 100644
index 0000000000..b334db54c0
--- /dev/null
+++ b/build/plugin-util.js
@@ -0,0 +1,25 @@
+const path = require('path')
+const fs = require('fs')
+
+// given a plugin directory path, fetch or infer the plugin's name
+module.exports = {
+
+    getPluginName(pluginDir) {
+
+        // if it has a package.json file, try to read that and
+        // take the plugin name from that
+        let packageDefFile = path.resolve(pluginDir,'package.json')
+        if (fs.existsSync(packageDefFile)) {
+            let packageDef = require(packageDefFile)
+            if (packageDef.jbrowse && packageDef.jbrowse.pluginName) {
+                return packageDef.jbrowse.pluginName
+            }
+        }
+
+        // otherwise, it's the basename of the plugin directory,
+        // minus any '-jbrowse-plugin' suffix
+        return path.basename(pluginDir)
+            .replace(/-jbrowse-plugin\/?/,'')
+    }
+
+}
diff --git a/compat_121.html b/compat_121.html
deleted file mode 100644
index 96c794907f..0000000000
--- a/compat_121.html
+++ /dev/null
@@ -1,50 +0,0 @@
-<!DOCTYPE html>
-<html>
-  <head>
-    <meta http-equiv="Content-Type" content = "text/html; charset=utf-8">
-    <title>JBrowse</title>
-    <link rel="stylesheet" type="text/css" href="css/genome.css"></link>
-    <script type="text/javascript" src="src/dojo/dojo.js" data-dojo-config="async: 1, baseUrl: './src'"></script>
-    <script type="text/javascript" src="src/JBrowse/init.js"></script>
-
-    <script type="text/javascript">
-        window.onerror=function(msg){
-            document.body.setAttribute("JSError",msg);
-        }
-
-        var JBrowse;
-        require( [ 'JBrowse/Browser', 'dojo/io-query' ],
-            function (Browser,ioQuery) {
-                   var queryParams = ioQuery.queryToObject( window.location.search.slice(1) );
-                   var dataRoot = queryParams.data || 'data';
-                   JBrowse = new Browser({
-                                           containerID: "GenomeBrowser",
-                                           refSeqs: dataRoot + "/refSeqs.js",
-                                           include: [
-                                             { url: dataRoot + "/trackInfo.js", version: 0 }
-                                           ],
-                                           plugins: [
-                                                   "NeatHTMLFeatures",
-                                                   "NeatCanvasFeatures",
-                                                   "HideTrackLabels"
-                                           ],
-                                           nameUrl: dataRoot + "/names/root.json",
-                                           defaultTracks: "DNA,gene,mRNA,noncodingRNA",
-                                           queryParams: queryParams,
-                                           location: queryParams.loc,
-                                           forceTracks: queryParams.tracks,
-                                           show_nav: queryParams.nav,
-                                           show_tracklist: queryParams.tracklist,
-                                           show_overview: queryParams.overview,
-                                           config_list: queryParams.config
-                                       });
-        });
-    </script>
-
-  </head>
-
-  <body>
-    <div id="GenomeBrowser" style="height: 100%; width: 100%; padding: 0; border: 0;"></div>
-    <div style="display: none">JBrowseDefaultMainPage</div>
-  </body>
-</html>
diff --git a/css/faceted_track_selector.css b/css/faceted_track_selector.css
index c89130afc9..1366a7d8f6 100644
--- a/css/faceted_track_selector.css
+++ b/css/faceted_track_selector.css
@@ -1,6 +1,6 @@
 /* Dojo and Dijit stuff */
 
-@import url("../src/dojox/grid/resources/tundraGrid.css");
+@import url("../node_modules/dojox/grid/resources/tundraGrid.css");
 
 .dojoxGrid table {
   margin: 0;
@@ -142,7 +142,7 @@
     padding: 0 6px;
 }
 .tundra #faceted_tracksel .faceted_tracksel_on_off.tab {
-    background: #e9e9e9 url("../src/dijit/themes/tundra/images/titleBar.png") top repeat-x;
+    background: #e9e9e9 url("../node_modules/dijit/themes/tundra/images/titleBar.png") top repeat-x;
     border: 2px solid #666;
 
     border-top-right-radius: 5px;
@@ -256,7 +256,7 @@
 
 /* styling specifically for the title of the first facet title, which is 'My Tracks' */
 .tundra #faceted_tracksel .myTracks .facetTitle:after {
-    content: url("../src/dijit/themes/tundra/images/circleIcon.png");
+    content: url("../node_modules/dijit/themes/tundra/images/circleIcon.png");
     margin-left: 7px;
 }
 #faceted_tracksel .myTracks .facetTitle {
diff --git a/css/file_dialog.css b/css/file_dialog.css
index 3eca723b11..d9ce9c883c 100644
--- a/css/file_dialog.css
+++ b/css/file_dialog.css
@@ -1,4 +1,4 @@
-@import url("../src/dojox/form/resources/UploaderFileList.css");
+@import url("../node_modules/dojox/form/resources/UploaderFileList.css");
 .fileDialog {
     color: #333;
 }
diff --git a/css/genome.css b/css/genome.css
index 2c9d520708..a322914865 100644
--- a/css/genome.css
+++ b/css/genome.css
@@ -1,8 +1,8 @@
 /* main application CSS styles */
 
-@import url("../src/dijit/themes/tundra/tundra.css");
-@import url("../src/dojo/resources/dojo.css");
-@import url("../src/dgrid/css/dgrid.css");
+@import url("../node_modules/dijit/themes/tundra/tundra.css");
+@import url("../node_modules/dojo/resources/dojo.css");
+@import url("../node_modules/dgrid/css/dgrid.css");
 
 @import url("main.css");
 @import url("sequence.css");
diff --git a/css/main.css b/css/main.css
index 932880eb9d..ccba0bdb6f 100644
--- a/css/main.css
+++ b/css/main.css
@@ -291,7 +291,7 @@ div.overview {
     display: block;
     height: 23px;
 
-    background: #FAFAFA url(../src/dijit/themes/tundra/images/titleBar.png) repeat-x top left;
+    background: #FAFAFA url(../node_modules/dijit/themes/tundra/images/titleBar.png) repeat-x top left;
 
     border-style: solid;
     border-width: 1px 0px 1px 0px;
@@ -381,7 +381,7 @@ div.track.pinned {
 div#static_track {
     top: 0px;
     position: absolute;
-    background: #FAFAFA url(../src/dijit/themes/tundra/images/titleBar.png) repeat-x top left;
+    background: #FAFAFA url(../node_modules/dijit/themes/tundra/images/titleBar.png) repeat-x top left;
     border-top: 1px solid #999;
     border-bottom: 1px solid #444;
     z-index: 20;
@@ -568,16 +568,16 @@ div.track-label .feature-density {
     border-left-color: #ccc;
 }
 .tundra div.track-label .track-close-button {
-    background: url("../src/dijit/themes/tundra/images/tabClose.png") no-repeat 40% 50%;
+    background: url("../node_modules/dijit/themes/tundra/images/tabClose.png") no-repeat 40% 50%;
 }
 .tundra div.track-label .track-close-button:hover {
-    background-image: url("../src/dijit/themes/tundra/images/tabCloseHover.png");
+    background-image: url("../node_modules/dijit/themes/tundra/images/tabCloseHover.png");
 }
 .tundra div.track-label:hover .track-menu-button:hover div {
     background-position-x: 0px;
 }
 div.track-label:hover {
-    background: #FAFAFA url(../src/dijit/themes/tundra/images/titleBar.png) repeat-x top left;
+    background: #FAFAFA url(../node_modules/dijit/themes/tundra/images/titleBar.png) repeat-x top left;
 
     border-width: 1px;
     border-color: #666;
diff --git a/css/track_styles.css b/css/track_styles.css
index 04ec245183..4ea0225e63 100644
--- a/css/track_styles.css
+++ b/css/track_styles.css
@@ -256,7 +256,7 @@ div.helix-hist {
 
     position:absolute;
     height: 13px;
-    background-image: url('img/glyph-diamond.png');
+    background-image: url('../img/glyph-diamond.png');
     background-repeat: repeat-x;
     cursor: pointer;
 }
diff --git a/index.html b/index.html
index 5b667c4097..347a0661f8 100644
--- a/index.html
+++ b/index.html
@@ -3,121 +3,14 @@
   <head>
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8">
     <title>JBrowse</title>
-    <link rel="stylesheet" type="text/css" href="css/genome.css">
-    <script type="text/javascript">
-            // jshint unused: false
-            var dojoConfig = {
-                async: true,
-                baseUrl: './src',
-                has: {
-                    'host-node': false // Prevent dojo from being fooled by Electron
-                }
-            };
-            // Move Electron's require out before loading Dojo
-            if(window.process&&process.versions&&process.versions.electron) {
-                window.electronRequire = require;
-                delete window.require;
-            }
-    </script>
-    <script type="text/javascript" src="src/dojo/dojo.js"></script>
-    <script type="text/javascript" src="src/JBrowse/init.js"></script>
+
+    <script type="text/javascript" src="dist/main.bundle.js" charset="utf-8"></script>
     <script type="text/javascript">
         window.onerror=function(msg){
             if( document.body )
                 document.body.setAttribute("JSError",msg);
         }
-
-        // puts the main Browser object in this for convenience.  feel
-        // free to move it into function scope if you want to keep it
-        // out of the global namespace
-        var JBrowse;
-        require(['JBrowse/Browser','JBrowse/QueryParamConfigMapper', 'dojo/io-query', 'dojo/json' ],
-             function (Browser,QueryParamConfigMapper,ioQuery,JSON) {
-                   // the initial configuration of this JBrowse
-                   // instance
-
-                   // NOTE: this initial config is the same as any
-                   // other JBrowse config in any other file.  this
-                   // one just sets defaults from URL query params.
-                   // If you are embedding JBrowse in some other app,
-                   // you might as well just set this initial config
-                   // to something like { include: '../my/dynamic/conf.json' },
-                   // or you could put the entire
-                   // dynamically-generated JBrowse config here.
-
-                   // parse the query vars in the page URL
-                   var queryParams = ioQuery.queryToObject( window.location.search.slice(1) );
-
-                   var config = {
-                       containerID: "GenomeBrowser",
-
-                       dataRoot: queryParams.data,
-                       queryParams: queryParams,
-                       location: queryParams.loc,
-                       forceTracks: queryParams.tracks,
-                       initialHighlight: queryParams.highlight,
-                       show_nav: queryParams.nav,
-                       show_tracklist: queryParams.tracklist,
-                       show_overview: queryParams.overview,
-                       show_menu: queryParams.menu,
-                       show_fullviewlink: queryParams.fullviewlink,
-                       show_tracklabels: queryParams.tracklabels,
-                       update_browser_title: queryParams.browsertitle,
-                       highResolutionMode: queryParams.highres,
-                       stores: { url: { type: "JBrowse/Store/SeqFeature/FromConfig", features: [] } },
-                       bookmarks: { },
-                       makeFullViewURL: function( browser ) {
-
-                           // the URL for the 'Full view' link
-                           // in embedded mode should be the current
-                           // view URL, except with 'nav', 'tracklist',
-                           // and 'overview' parameters forced to 1.
-
-                           return browser.makeCurrentViewURL({ nav: 1, tracklist: 1, overview: 1 });
-                       },
-                       updateBrowserURL: true
-                   };
-
-                   //if there is ?addFeatures in the query params,
-                   //define a store for data from the URL
-                   if( queryParams.addFeatures ) {
-                       config.stores.url.features = JSON.parse( queryParams.addFeatures );
-                   }
-
-                   // if there is ?addTracks in the query params, add
-                   // those track configurations to our initial
-                   // configuration
-                   if( queryParams.addTracks ) {
-                       config.tracks = JSON.parse( queryParams.addTracks );
-                   }
-
-                   // if there is ?addBookmarks, add those to configuration
-                   if( queryParams.addBookmarks ) {
-                       config.bookmarks.features = JSON.parse( queryParams.addBookmarks );
-                   }
-
-                   // if there is ?addStores in the query params, add
-                   // those store configurations to our initial
-                   // configuration
-                   if( queryParams.addStores ) {
-                       config.stores = JSON.parse( queryParams.addStores );
-                   }
-
-				   // this handles dot notation versions of addTracks, addBookmarks, and addStores
-				   // see config doc for details
-                   QueryParamConfigMapper().handleQueryParams(config,queryParams);
-
-                   // create a JBrowse global variable holding the JBrowse instance
-                   JBrowse = new Browser( config );
-
-                   require.on('error', function(error) {
-                       JBrowse.fatalError('Failed to load resource: '+error.info[0]);
-                   });
-
-                   JBrowse.afterMilestone('loadRefSeqs', function() { dojo.destroy(dojo.byId('LoadingScreen')); });
-        });
     </script>
-
   </head>
 
   <body>
diff --git a/package-lock.json b/package-lock.json
new file mode 100644
index 0000000000..64d433d955
--- /dev/null
+++ b/package-lock.json
@@ -0,0 +1,10016 @@
+{
+  "name": "@gmod/jbrowse",
+  "version": "1.12.6-alpha.0",
+  "lockfileVersion": 1,
+  "requires": true,
+  "dependencies": {
+    "@babel/code-frame": {
+      "version": "7.0.0-beta.40",
+      "resolved": "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.0.0-beta.40.tgz",
+      "integrity": "sha512-eVXQSbu/RimU6OKcK2/gDJVTFcxXJI4sHbIqw2mhwMZeQ2as/8AhS9DGkEDoHMBBNJZ5B0US63lF56x+KDcxiA==",
+      "dev": true,
+      "requires": {
+        "@babel/highlight": "7.0.0-beta.40"
+      }
+    },
+    "@babel/core": {
+      "version": "7.0.0-beta.40",
+      "resolved": "https://registry.npmjs.org/@babel/core/-/core-7.0.0-beta.40.tgz",
+      "integrity": "sha512-jJMjn/EMg89xDGv7uq4BoFg+fHEchSeqNc9YUMnGuAi/FWKBkSsDbhh2y5euw4qaGOFD2jw1le0rvCu5gPUc6Q==",
+      "dev": true,
+      "requires": {
+        "@babel/code-frame": "7.0.0-beta.40",
+        "@babel/generator": "7.0.0-beta.40",
+        "@babel/helpers": "7.0.0-beta.40",
+        "@babel/template": "7.0.0-beta.40",
+        "@babel/traverse": "7.0.0-beta.40",
+        "@babel/types": "7.0.0-beta.40",
+        "babylon": "7.0.0-beta.40",
+        "convert-source-map": "1.5.1",
+        "debug": "3.1.0",
+        "json5": "0.5.1",
+        "lodash": "4.17.5",
+        "micromatch": "2.3.11",
+        "resolve": "1.5.0",
+        "source-map": "0.5.7"
+      },
+      "dependencies": {
+        "debug": {
+          "version": "3.1.0",
+          "resolved": "https://registry.npmjs.org/debug/-/debug-3.1.0.tgz",
+          "integrity": "sha512-OX8XqP7/1a9cqkxYw2yXss15f26NKWBpDXQd0/uK/KPqdQhxbPa994hnzjcE2VqQpDslf55723cKPUOGSmMY3g==",
+          "dev": true,
+          "requires": {
+            "ms": "2.0.0"
+          }
+        }
+      }
+    },
+    "@babel/generator": {
+      "version": "7.0.0-beta.40",
+      "resolved": "https://registry.npmjs.org/@babel/generator/-/generator-7.0.0-beta.40.tgz",
+      "integrity": "sha512-c91BQcXyTq/5aFV4afgOionxZS1dxWt8OghEx5Q52SKssdGRFSiMKnk9tGkev1pYULPJBqjSDZU2Pcuc58ffZw==",
+      "dev": true,
+      "requires": {
+        "@babel/types": "7.0.0-beta.40",
+        "jsesc": "2.5.1",
+        "lodash": "4.17.5",
+        "source-map": "0.5.7",
+        "trim-right": "1.0.1"
+      },
+      "dependencies": {
+        "jsesc": {
+          "version": "2.5.1",
+          "resolved": "https://registry.npmjs.org/jsesc/-/jsesc-2.5.1.tgz",
+          "integrity": "sha1-5CGiqOINawgZ3yiQj3glJrlt0f4=",
+          "dev": true
+        }
+      }
+    },
+    "@babel/helper-annotate-as-pure": {
+      "version": "7.0.0-beta.40",
+      "resolved": "https://registry.npmjs.org/@babel/helper-annotate-as-pure/-/helper-annotate-as-pure-7.0.0-beta.40.tgz",
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+      "dev": true,
+      "requires": {
+        "@babel/types": "7.0.0-beta.40"
+      }
+    },
+    "@babel/helper-builder-binary-assignment-operator-visitor": {
+      "version": "7.0.0-beta.40",
+      "resolved": "https://registry.npmjs.org/@babel/helper-builder-binary-assignment-operator-visitor/-/helper-builder-binary-assignment-operator-visitor-7.0.0-beta.40.tgz",
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+      "dev": true,
+      "requires": {
+        "@babel/helper-explode-assignable-expression": "7.0.0-beta.40",
+        "@babel/types": "7.0.0-beta.40"
+      }
+    },
+    "@babel/helper-call-delegate": {
+      "version": "7.0.0-beta.40",
+      "resolved": "https://registry.npmjs.org/@babel/helper-call-delegate/-/helper-call-delegate-7.0.0-beta.40.tgz",
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+      "dev": true,
+      "requires": {
+        "@babel/helper-hoist-variables": "7.0.0-beta.40",
+        "@babel/traverse": "7.0.0-beta.40",
+        "@babel/types": "7.0.0-beta.40"
+      }
+    },
+    "@babel/helper-define-map": {
+      "version": "7.0.0-beta.40",
+      "resolved": "https://registry.npmjs.org/@babel/helper-define-map/-/helper-define-map-7.0.0-beta.40.tgz",
+      "integrity": "sha512-hDg3sFSAxYQ/CSXzIBzGeNRD4yp89MkC3wkwvGBH80LXobL6csEdQpzCPhwpL0K8RNB07awRnck1OtPqjeCpgA==",
+      "dev": true,
+      "requires": {
+        "@babel/helper-function-name": "7.0.0-beta.40",
+        "@babel/types": "7.0.0-beta.40",
+        "lodash": "4.17.5"
+      }
+    },
+    "@babel/helper-explode-assignable-expression": {
+      "version": "7.0.0-beta.40",
+      "resolved": "https://registry.npmjs.org/@babel/helper-explode-assignable-expression/-/helper-explode-assignable-expression-7.0.0-beta.40.tgz",
+      "integrity": "sha512-EUbu+uVNtHVp9emICjYO5wYodqWnSTx/s4Hfk++7IdnPTQi7UA9F/tPXf1GS8BLazlWc9tDwQ2aHFQLheHEXHw==",
+      "dev": true,
+      "requires": {
+        "@babel/traverse": "7.0.0-beta.40",
+        "@babel/types": "7.0.0-beta.40"
+      }
+    },
+    "@babel/helper-function-name": {
+      "version": "7.0.0-beta.40",
+      "resolved": "https://registry.npmjs.org/@babel/helper-function-name/-/helper-function-name-7.0.0-beta.40.tgz",
+      "integrity": "sha512-cK9BVLtOfisSISTTHXKGvBc2OBh65tjEk4PgXhsSnnH0i8RP2v+5RCxoSlh2y/i+l2fxQqKqv++Qo5RMiwmRCA==",
+      "dev": true,
+      "requires": {
+        "@babel/helper-get-function-arity": "7.0.0-beta.40",
+        "@babel/template": "7.0.0-beta.40",
+        "@babel/types": "7.0.0-beta.40"
+      }
+    },
+    "@babel/helper-get-function-arity": {
+      "version": "7.0.0-beta.40",
+      "resolved": "https://registry.npmjs.org/@babel/helper-get-function-arity/-/helper-get-function-arity-7.0.0-beta.40.tgz",
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+      "dev": true,
+      "requires": {
+        "@babel/types": "7.0.0-beta.40"
+      }
+    },
+    "@babel/helper-hoist-variables": {
+      "version": "7.0.0-beta.40",
+      "resolved": "https://registry.npmjs.org/@babel/helper-hoist-variables/-/helper-hoist-variables-7.0.0-beta.40.tgz",
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+      "dev": true,
+      "requires": {
+        "@babel/types": "7.0.0-beta.40"
+      }
+    },
+    "@babel/helper-module-imports": {
+      "version": "7.0.0-beta.40",
+      "resolved": "https://registry.npmjs.org/@babel/helper-module-imports/-/helper-module-imports-7.0.0-beta.40.tgz",
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+      "dev": true,
+      "requires": {
+        "@babel/types": "7.0.0-beta.40",
+        "lodash": "4.17.5"
+      }
+    },
+    "@babel/helper-module-transforms": {
+      "version": "7.0.0-beta.40",
+      "resolved": "https://registry.npmjs.org/@babel/helper-module-transforms/-/helper-module-transforms-7.0.0-beta.40.tgz",
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+      "dev": true,
+      "requires": {
+        "@babel/helper-module-imports": "7.0.0-beta.40",
+        "@babel/helper-simple-access": "7.0.0-beta.40",
+        "@babel/template": "7.0.0-beta.40",
+        "@babel/types": "7.0.0-beta.40",
+        "lodash": "4.17.5"
+      }
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+      "resolved": "https://registry.npmjs.org/yargs/-/yargs-7.1.0.tgz",
+      "integrity": "sha1-a6MY6xaWFyf10oT46gA+jWFU0Mg=",
+      "dev": true,
+      "requires": {
+        "camelcase": "3.0.0",
+        "cliui": "3.2.0",
+        "decamelize": "1.2.0",
+        "get-caller-file": "1.0.2",
+        "os-locale": "1.4.0",
+        "read-pkg-up": "1.0.1",
+        "require-directory": "2.1.1",
+        "require-main-filename": "1.0.1",
+        "set-blocking": "2.0.0",
+        "string-width": "1.0.2",
+        "which-module": "1.0.0",
+        "y18n": "3.2.1",
+        "yargs-parser": "5.0.0"
+      },
+      "dependencies": {
+        "camelcase": {
+          "version": "3.0.0",
+          "resolved": "https://registry.npmjs.org/camelcase/-/camelcase-3.0.0.tgz",
+          "integrity": "sha1-MvxLn82vhF/N9+c7uXysImHwqwo=",
+          "dev": true
+        }
+      }
+    },
+    "yargs-parser": {
+      "version": "5.0.0",
+      "resolved": "https://registry.npmjs.org/yargs-parser/-/yargs-parser-5.0.0.tgz",
+      "integrity": "sha1-J17PDX/+Bcd+ZOfIbkzZS/DhIoo=",
+      "dev": true,
+      "requires": {
+        "camelcase": "3.0.0"
+      },
+      "dependencies": {
+        "camelcase": {
+          "version": "3.0.0",
+          "resolved": "https://registry.npmjs.org/camelcase/-/camelcase-3.0.0.tgz",
+          "integrity": "sha1-MvxLn82vhF/N9+c7uXysImHwqwo=",
+          "dev": true
+        }
+      }
+    },
+    "yauzl": {
+      "version": "2.4.1",
+      "resolved": "https://registry.npmjs.org/yauzl/-/yauzl-2.4.1.tgz",
+      "integrity": "sha1-lSj0QtqxsihOWLQ3m7GU4i4MQAU=",
+      "dev": true,
+      "requires": {
+        "fd-slicer": "1.0.1"
+      }
+    }
+  }
+}
diff --git a/package.json b/package.json
index 99e2ccffe8..0bb66a4721 100644
--- a/package.json
+++ b/package.json
@@ -5,9 +5,9 @@
   "description": "JBrowse - client-side genome browser",
   "repository": "https://github.com/GMOD/jbrowse.git",
   "scripts": {
-    "postinstall": "node utils/postinstall.js",
     "test": "phantomjs tests/js_tests/run-jasmine.js http://localhost/jbrowse/tests/js_tests/index.html",
-    "start": "./jb_run.js -p 8082"
+    "start": "./jb_run.js -p 8082",
+    "build": "node node_modules/webpack/bin/webpack.js --config webpack.config.js"
   },
   "publishConfig": {
     "access": "public"
@@ -19,24 +19,47 @@
   },
   "license": "(LGPL-2.1 OR Artistic-2.0)",
   "dependencies": {
-    "app-root-path": "^2.0.1",
-    "async": "^2.5.0",
+    "express": "^4.15.4",
+    "fs-extra": "^4.0.1",
+    "node-getopt": "^0.2.3",
+    "shelljs": "^0.7.8"
+  },
+  "devDependencies": {
+    "@babel/core": "^7.0.0-beta.40",
+    "@babel/preset-env": "^7.0.0-beta.40",
+    "ajv": "^6.2.1",
+    "babel-loader": "^8.0.0-beta.0",
+    "babel-polyfill": "^6.26.0",
+    "clean-webpack-plugin": "^0.1.18",
+    "copy-webpack-plugin": "4.1.1",
+    "css-loader": "^0.28.10",
     "dgrid": "^1.1.0",
     "dijit": "^1.12.2",
     "dojo": "^1.12.2",
     "dojo-dstore": "^1.1.1",
     "dojo-util": "^1.12.2",
+    "dojo-webpack-plugin": "^2.6.0",
     "dojox": "^1.12.2",
     "electron-screenshot": "^1.0.2",
-    "express": "^4.15.4",
+    "extract-text-webpack-plugin": "^3.0.2",
     "filesaver.js": "^0.2.0",
-    "fs-extra": "^4.0.1",
-    "jDataView": "git+https://github.com/rbuels/jdataview.git",
+    "imports-loader": "^0.8.0",
     "jasmine-node": "^1.14.5",
-    "json-schema": "git+https://github.com/kriszyp/json-schema.git",
-    "jszlib": "git+https://github.com/cmdcolin/jszlib.git",
-    "lazyload": "git+https://github.com/cmdcolin/lazyload.git#amd",
-    "node-getopt": "^0.2.3",
-    "shelljs": "^0.7.8"
-  }
+    "jszlib": "git+https://github.com/cmdcolin/jszlib.git#c966ceac3b283d2248764c09e07a4b268edd5032",
+    "node-sass": "^4.7.2",
+    "phantomjs-prebuilt": "^2.1.16",
+    "regexp-replace-loader": "^1.0.1",
+    "sass-loader": "^6.0.7",
+    "style-loader": "^0.20.2",
+    "uglifyjs-webpack-plugin": "^1.2.2",
+    "url-loader": "0.5.7",
+    "util-deprecate": "^1.0.2",
+    "webpack": "^3.10.0"
+  },
+  "browserslist": [
+    "> 0.3%",
+    "last 2 versions",
+    "Firefox ESR",
+    "not dead"
+  ]
 }
diff --git a/plugins/SVGLollipopTrack/js/SVGFeatures.js b/plugins/SVGLollipopTrack/js/SVGFeatures.js
deleted file mode 100644
index 7b3e2c09fd..0000000000
--- a/plugins/SVGLollipopTrack/js/SVGFeatures.js
+++ /dev/null
@@ -1,1313 +0,0 @@
-/**
- * SVGFeatures - derrived from CanvasFeatures
- */
-
-define( [
-            'dojo/_base/declare',
-            'dojo/_base/array',
-            'dojo/_base/lang',
-            'dojo/_base/event',
-            'dojo/mouse',
-            'dojo/dom-construct',
-            'dojo/Deferred',
-            'dojo/on',
-            'JBrowse/has',
-            'JBrowse/Util',
-            'JBrowse/View/GranularRectLayout',
-            'JBrowse/View/Track/BlockBased',
-            'JBrowse/View/Track/_ExportMixin',
-            'JBrowse/Errors',
-            'JBrowse/View/Track/_FeatureDetailMixin',
-            'JBrowse/View/Track/_FeatureContextMenusMixin',
-            'JBrowse/View/Track/_YScaleMixin',
-            'JBrowse/Model/Location',
-            'JBrowse/Model/SimpleFeature'
-        ],
-        function(
-            declare,
-            array,
-            lang,
-            domEvent,
-            mouse,
-            domConstruct,
-            Deferred,
-            on,
-            has,
-            Util,
-            Layout,
-            BlockBasedTrack,
-            ExportMixin,
-            Errors,
-            FeatureDetailMixin,
-            FeatureContextMenuMixin,
-            YScaleMixin,
-            Location,
-            SimpleFeature
-        ) {
-
-/**
- *  inner class that indexes feature layout rectangles (fRects) (which
- *  include features) by unique ID.
- *
- *  We have one of these indexes in each block.
- */
-var FRectIndex = declare( null,  {
-    constructor: function( args ) {
-        var height = args.h;
-        var width  = args.w;
-
-        this.dims = { h: height, w: width };
-
-        this.byID = {};
-    },
-
-    getByID: function( id ) {
-        return this.byID[id];
-    },
-
-    addAll: function( fRects ) {
-        var byID = this.byID;
-        var cW = this.dims.w;
-        var cH = this.dims.h;
-        array.forEach( fRects, function( fRect ) {
-            if( ! fRect )
-                return;
-
-            // by ID
-            byID[ fRect.f.id() ] = fRect;
-        }, this );
-    },
-
-    getAll: function( ) {
-        var fRects = [];
-        for( var id in this.byID ) {
-            fRects.push( this.byID[id] );
-        }
-        return fRects;
-    }
-});
-
-return declare(
-    [ BlockBasedTrack,
-      FeatureDetailMixin,
-      ExportMixin,
-      FeatureContextMenuMixin,
-      YScaleMixin
-    ], {
-
-    constructor: function( args ) {
-        this.glyphsLoaded = {};
-        this.glyphsBeingLoaded = {};
-        this.regionStats = {};
-        this.showLabels = this.config.style.showLabels;
-        this.showTooltips = this.config.style.showTooltips;
-        this.displayMode = this.config.displayMode;
-
-        //setup displayMode style cookie
-        var cookie = this.browser.cookie("track-" + this.name);
-        if (cookie) {
-            this.displayMode = cookie;
-        }
-
-        this._setupEventHandlers();
-    },
-
-    _defaultConfig: function() {
-        return Util.deepUpdate(
-            lang.clone( this.inherited(arguments) ),
-            {
-            maxFeatureScreenDensity: 0.5,
-
-            // default glyph class to use
-            glyph: lang.hitch( this, 'guessGlyphType' ),
-
-            // maximum number of pixels on each side of a
-            // feature's bounding coordinates that a glyph is
-            // allowed to use
-            maxFeatureGlyphExpansion: 500,
-
-            // maximum height of the track, in pixels
-            maxHeight: 600,
-
-            histograms: {
-                description: 'feature density',
-                min: 0,
-                height: 100,
-                color: 'goldenrod',
-                clip_marker_color: 'red'
-            },
-
-            style: {
-                // not configured by users
-                _defaultHistScale: 4,
-                _defaultLabelScale: 30,
-                _defaultDescriptionScale: 120,
-
-                showLabels: true,
-                showTooltips: true,
-                label: 'name,id',
-                description: 'note, description'
-            },
-
-            displayMode: 'normal',
-
-            events: {
-                contextmenu: function( feature, fRect, block, track, evt ) {
-                    evt = domEvent.fix( evt );
-                    if( fRect && fRect.contextMenu )
-                        fRect.contextMenu._openMyself({ target: block.featureCanvas, coords: { x: evt.pageX, y: evt.pageY }} );
-                    domEvent.stop( evt );
-                }
-            },
-
-            menuTemplate: [
-                { label: 'View details',
-                  title: '{type} {name}',
-                  action: 'contentDialog',
-                  iconClass: 'dijitIconTask',
-                  content: dojo.hitch( this, 'defaultFeatureDetail' )
-                },
-                {
-                    "label" : function() {
-                        return 'Zoom to this '+( this.feature.get('type') || 'feature' );
-                    },
-                    "action" : function(){
-                        var ref   = this.track.refSeq;
-                        var paddingBp = Math.round( 10 /*pixels*/ / this.viewInfo.scale /* px/bp */ );
-                        var start = Math.max( ref.start, this.feature.get('start') - paddingBp );
-                        var end   = Math.min( ref.end, this.feature.get('end') + paddingBp );
-                        this.track.genomeView.setLocation( ref, start, end );
-                    },
-                    "iconClass" : "dijitIconConnector"
-                },
-                {
-                  label : function() {
-                      return 'Highlight this '+( this.feature.get('type') || 'feature' );
-                  },
-                  action: function() {
-                     var loc = new Location({ feature: this.feature, tracks: [this.track] });
-                     this.track.browser.setHighlightAndRedraw(loc);
-                  },
-                  iconClass: 'dijitIconFilter'
-                }
-            ]
-        });
-    },
-
-    setViewInfo: function( genomeView, heightUpdate, numBlocks, trackDiv, widthPct, widthPx, scale ) {
-        console.log("SVGFeatures::setViewInfo");
-
-        this.inherited( arguments );
-        
-        // make svg canvas
-        this.svgCanvas = document.createElementNS('http://www.w3.org/2000/svg','svg');
-        this.svgCanvas.setAttribute('class', 'svg-overlay');
-        this.svgCanvas.setAttribute('style', 'width:100%;height:100%;cursor:default;position:absolute;z-index:15');
-        domConstruct.place(this.svgCanvas,trackDiv);
-
-        // container for coord elements (this is just to test the coordinate space)
-        this.coordGroup = document.createElementNS('http://www.w3.org/2000/svg','g');
-        this.svgCanvas.appendChild(this.coordGroup);
-        this.svgCanvas.fCoord = new Array();
-
-        // container for feature elements
-        this.svgCanvas.featureGroup = document.createElementNS('http://www.w3.org/2000/svg','g');
-        this.svgCanvas.featureGroup.fItem = new Array();
-        this.svgCanvas.appendChild(this.svgCanvas.featureGroup);
-        
-        
-        //this.svgCanvas.height = this.svgCanvas.offsetHeight;
-        
-        this.svgHeight = 100;
-        this.svgScale = 1;
-
-        this._makeLabelTooltip( );
-        
-    },
-
-    showRange: function(first, last, startBase, bpPerBlock, scale, containerStart, containerEnd) {
-        console.log("SVGFeatures::showRange");
-        console.log(first+" "+last+" "+startBase+" "+bpPerBlock+" "+scale+" "+containerStart+" "+containerEnd);
-
-        this.displayContext = {
-            first: first,
-            last: last,
-            startBase: startBase,
-            bpPerBlock: bpPerBlock,
-            scale: scale,
-            containerStart: containerStart,
-            containerEnd: containerEnd
-        }
-        
-        this.inherited(arguments);      // call the superclass's showRange
-        
-        this.showSVGRange(first, last, startBase, bpPerBlock, scale, containerStart, containerEnd);
-        
-    },
-    showSVGRange: function(first, last, startBase, bpPerBlock, scale, containerStart, containerEnd) {
-    
-        var lf = this.blocks[first].domNode.left;
-    
-        // adjust svg size
-        var left = first * this.widthPct;
-        var width = (last - first) * this.widthPct;
-        
-        // setup viewbox values for svgCanvas
-        var vbMinX = -left;
-        var vbMinY = 0; 
-        var vbHeight = this.svgHeight;
-        var vbWidth = width;
-        var vbValues = bMinX + ' ' + vbMinY + ' ' + vbWidth + ' ' + vbHeight;
-
-        this.svgCanvas.setAttribute('style', 'left:'+left+'%;width:'+width+'%;height:100%;cursor:default;position:absolute;z-index:15');
-        this.coordGroup.setAttribute('style', 'width:100%;height:100%;position:absolute;');
-        this.corodGroup.setAttribute('viewBox', vbValues);
-        this.svgCanvas.featureGroup.setAttribute('style', 'width:100%;height:100%;position:absolute;');
-        
-        var maxLen = this.svgHeight;
-	var len = 0;
-        
-        // lot of this can go away when the viewbox stuff is working properly.
-        // traverse features.
-        for (var id in this.svgCanvas.featureGroup.fItem) {
-            var bpCoord = this.svgCanvas.featureGroup.fItem[id].bpCoord;
-            if (bpCoord < this.blocks[first].startBase && bpCoord > this.blocks[last].endBase) {
-                // hide features out of range
-                this.svgCanvas.featureGroup.fItem[id].setAttribute("display","none");
-            }
-            else {
-                // adjust positions of features
-                var feature = this.svgCanvas.featureGroup.fItem[id].feature;
-                var bpCoord = feature.get("start");
-                var cx = this.bp2px(bpCoord);
-                len = feature.get("end") - feature.get("start") ;
-                if (len > maxLen)  maxLen = len;
-                len = this.svgHeight - (len / 5);
-                if (id.charAt(0) === "C")
-                    this.svgCanvas.featureGroup.fItem[id].setAttribute('style', 'cx:'+cx+';cy:'+len+';r:10;fill:rgba(0,0,255,.5)');
-                else {
-                    svgItem = this.svgCanvas.featureGroup.fItem[id];
-                    svgItem.feature = feature;
-                    svgItem.setAttribute('x1',cx);
-                    svgItem.setAttribute('y1',len);
-                    svgItem.setAttribute('x2',cx);
-                    svgItem.setAttribute('y2',this.svgHeight);
-                    svgItem.setAttribute('stroke','grey');
-                    svgItem.setAttribute('stroke-width',1);
-                    //svgItem.setAttribute('style', 'x1:'+cx+';y1:'+len+';x2:'+cx+';y2:'+this.svgHeight+';stroke:grey;stroke-width:1');
-                }
-		//console.log("len="+len);
-            }
-        }  
-        console.log("maxLen="+maxLen);
-
-        // adjust vertical height of features if necessary
-        if (0) { //maxLen > this.svgHeight) {
-            this.svgScale = this.svgHeight / maxLen;
-            console.log("Adjusting vertical...scale="+scale);
-            
-            // traverse features with vertical height adjust.
-            for (var id in this.svgCanvas.featureGroup.fItem) {
-                var bpCoord = this.svgCanvas.featureGroup.fItem[id].bpCoord;
-                if (bpCoord < this.blocks[first].startBase && bpCoord > this.blocks[last].endBase) {
-                    // hide features out of range
-                    this.svgCanvas.featureGroup.fItem[id].setAttribute("display","none");
-                }
-                else {
-                    // adjust positions of features
-                    var feature = this.svgCanvas.featureGroup.fItem[id].feature;
-                    var bpCoord = feature.get("start");
-                    var cx = this.bp2px(bpCoord);
-                    len = this.svgScale * (feature.get("end") - feature.get("start") ) / 5;
-                    len = this.svgHeight - len;
-                    if (id.charAt(0) === "C")
-                        this.svgCanvas.featureGroup.fItem[id].setAttribute('style', 'cx:'+cx+';cy:'+len+';r:10;fill:rgba(0,0,255,.5)');
-                    else {
-                        svgItem = this.svgCanvas.featureGroup.fItem[id];
-                        svgItem.feature = feature;
-                        svgItem.setAttribute('x1',cx);
-                        svgItem.setAttribute('y1',len);
-                        svgItem.setAttribute('x2',cx);
-                        svgItem.setAttribute('y2',this.svgHeight);
-                        svgItem.setAttribute('stroke','grey');
-                        svgItem.setAttribute('stroke-width',1);
-                        //svgItem.setAttribute('style', 'x1:'+cx+';y1:'+len+';x2:'+cx+';y2:'+this.svgHeight+';stroke:grey;stroke-width:1');
-                    }
-                }
-            }  
-        }
-        // erase test coordinates
-        for (var bpCoord in this.svgCanvas.fCoord) {
-            this.svgCanvas.fCoord[bpCoord].setAttribute("display","none");
-        }        
-        
-        // draw test coordinates
-        for(var i=first;i < last;i++) {
-            var bpCoord = this.blocks[i].startBase;
-            var x = this.bp2px(bpCoord);
-            var svgCoord;
-            if (bpCoord in this.svgCanvas.fCoord ) { 
-                svgCoord = this.svgCanvas.fCoord[bpCoord]; 
-            }
-            else {
-                svgCoord = document.createElementNS('http://www.w3.org/2000/svg','text');
-                this.svgCanvas.fCoord[bpCoord] = svgCoord;
-            }
-            svgCoord.setAttribute('x',x);
-            svgCoord.setAttribute('y','20');
-            svgCoord.setAttribute('fill','red');
-            svgCoord.setAttribute('transform','rotate(90 '+x+' 20)');
-            svgCoord.setAttribute('display','block');
-            svgCoord.innerHTML = bpCoord + 1;            
-            this.coordGroup.appendChild(svgCoord);
-        }
-    },
-    /*
-     * given BP coordinate, compute px coordinate within SVG canvas.
-     */ 
-    bp2px: function(val) {
-        return (val - this.displayContext.startBase) * this.displayContext.scale;
-        //return (val - (this.blocks[this.displayContext.first].startBase)) * this.displayContext.scale;
-    },
-    fixId: function(val) {
-        return val.replace(",", "-");
-    },
-    computeHeight: function() {
-        return this.svgHeight;
-    },
-    guessGlyphType: function(feature) {
-        return 'JBrowse/View/FeatureGlyph/'+( {'gene': 'Gene', 'mRNA': 'ProcessedTranscript', 'transcript': 'ProcessedTranscript' }[feature.get('type')] || 'Box' );
-    },
-
-    fillBlock: function( args ) {
-        var blockIndex = args.blockIndex;
-        var block = args.block;
-        var leftBase = args.leftBase;
-        var rightBase = args.rightBase;
-        var scale = args.scale;
-
-        if( ! has('canvas') ) {
-            this.fatalError = 'This browser does not support HTML canvas elements.';
-            this.fillBlockError( blockIndex, block, this.fatalError );
-            return;
-        }
-
-        var fill = lang.hitch( this, function( stats ) {
-
-                // calculate some additional view parameters that
-                // might depend on the feature stats and add them to
-                // the view args we pass down
-                var renderArgs = lang.mixin(
-                    {
-                        stats: stats,
-                        displayMode: this.displayMode,
-                        showFeatures: scale >= ( this.config.style.featureScale
-                                                 || (stats.featureDensity||0) / this.config.maxFeatureScreenDensity ),
-                        showLabels: this.showLabels && this.displayMode == "normal"
-                            && scale >= ( this.config.style.labelScale
-                                          || (stats.featureDensity||0) * this.config.style._defaultLabelScale ),
-                        showDescriptions: this.showLabels && this.displayMode == "normal"
-                            && scale >= ( this.config.style.descriptionScale
-                                          || (stats.featureDensity||0) * this.config.style._defaultDescriptionScale)
-                    },
-                    args
-                );
-
-                if( renderArgs.showFeatures ) {
-                    this.setLabel( this.key );
-                    this.removeYScale();
-                    this.fillFeatures( renderArgs );
-                }
-                else if( this.config.histograms.store || this.store.getRegionFeatureDensities ) {
-                    this.fillHistograms( renderArgs );
-                }
-                else {
-                    this.setLabel( this.key );
-                    this.fillTooManyFeaturesMessage(
-                        blockIndex,
-                        block,
-                        scale
-                    );
-                    args.finishCallback();
-                }
-            });
-
-        this.store.getGlobalStats(
-            fill,
-            dojo.hitch( this, function(e) {
-                            this._handleError( e, args );
-                            args.finishCallback(e);
-                        })
-        );
-    },
-
-    // override the base error handler to try to draw histograms if
-    // it's a data overflow error and we know how to draw histograms
-    _handleError: function( error, viewArgs ) {
-
-        if( typeof error == 'object'
-            && error instanceof Errors.DataOverflow
-            && ( this.config.histograms.store || this.store.getRegionFeatureDensities )
-          ) {
-              this.fillHistograms( viewArgs );
-        }
-        else
-            this.inherited(arguments);
-    },
-
-    // create the layout if we need to, and if we can
-    _getLayout: function( scale ) {
-        if( ! this.layout || this._layoutpitchX != 4/scale ) {
-            // if no layoutPitchY configured, calculate it from the
-            // height and marginBottom (parseInt in case one or both are functions), or default to 3 if the
-            // calculation didn't result in anything sensible.
-            var pitchY = this.getConf('layoutPitchY') || 4;
-            this.layout = new Layout({ pitchX: 4/scale, pitchY: pitchY, maxHeight: this.getConf('maxHeight'), displayMode: this.displayMode });
-            this._layoutpitchX = 4/scale;
-        }
-
-        return this.layout;
-    },
-
-    _clearLayout: function() {
-        delete this.layout;
-    },
-
-    hideAll: function() {
-        this._clearLayout();
-        return this.inherited( arguments );
-    },
-
-    /**
-     * Returns a promise for the appropriate glyph for the given
-     * feature and args.
-     */
-    getGlyph: function( viewArgs, feature, callback, errorCallback ) {
-        var glyphClassName = this.getConfForFeature( 'glyph', feature );
-        var glyph, interestedParties;
-        if(( glyph = this.glyphsLoaded[glyphClassName] )) {
-            callback( glyph );
-        }
-        else if(( interestedParties = this.glyphsBeingLoaded[glyphClassName] )) {
-            interestedParties.push( callback );
-        }
-        else {
-            var thisB = this;
-            this.glyphsBeingLoaded[glyphClassName] = [callback];
-            require( [glyphClassName], function( GlyphClass ) {
-
-                         // if this require came back after we are already destroyed, just ignore it
-                         if( thisB.destroyed )
-                             return;
-
-                         glyph = thisB.glyphsLoaded[glyphClassName] =
-                             new GlyphClass({ track: thisB, config: thisB.config, browser: thisB.browser });
-
-                         array.forEach( thisB.glyphsBeingLoaded[glyphClassName], function( cb ) {
-                                            cb( glyph );
-                                        });
-
-                         delete thisB.glyphsBeingLoaded[glyphClassName];
-
-                     });
-        }
-    },
-
-    fillHistograms: function( args ) {
-        // set the track label if we have a description
-        if( this.config.histograms.description ) {
-            this.setLabel(
-                this.key + ' <span class="feature-density">('
-                    + this.config.histograms.description
-                    + ')</span>'
-            );
-        }
-        else {
-            this.setLabel( this.key );
-        }
-
-        var numBins = this.config.histograms.binsPerBlock || 25;
-        var blockSizeBp = Math.abs( args.rightBase - args.leftBase );
-        var basesPerBin = blockSizeBp / numBins;
-        var query = {
-            ref:   this.refSeq.name,
-            start: args.leftBase,
-            end:   args.rightBase,
-            basesPerSpan: basesPerBin,
-            basesPerBin: basesPerBin
-        };
-
-        if( !this.config.histograms.store&&this.store.getRegionFeatureDensities ) {
-            this.store.getRegionFeatureDensities(
-                query,
-                lang.hitch( this, '_drawHistograms', args )
-            );
-        } else {
-            var thisB = this;
-            var histData = { features: [], stats: {} };
-            var handleError = lang.hitch( this, '_handleError' );
-            this.browser.getStore(
-                this.config.histograms.store,
-                function( histStore ) {
-                    histStore.getGlobalStats(
-                        function( stats ) {
-                            histData.stats.max = stats.scoreMax;
-                            histStore.getFeatures(
-                                query,
-                                function( feature ) {
-                                    histData.features.push( feature );
-                                },
-                                function() {
-                                    thisB._drawHistograms( args, histData );
-                                    args.finishCallback();
-                                },
-                                handleError
-                            );
-                        },
-                        handleError
-                    );
-                });
-        }
-    },
-
-    _drawHistograms: function( viewArgs, histData ) {
-
-        var maxScore = 'max' in this.config.histograms ? this.config.histograms.max : histData.stats.max;
-
-        // don't do anything if we don't know the score max
-        if( maxScore === undefined ) {
-            console.warn( 'no stats.max in hist data, not drawing histogram for block '+viewArgs.blockIndex );
-            return;
-        }
-
-        // don't do anything if we have no hist features
-        var features;
-        if(!( ( features = histData.features )
-              || histData.bins && ( features = this._histBinsToFeatures( viewArgs, histData ) )
-            ))
-            return;
-
-        var block = viewArgs.block;
-        var height = this.config.histograms.height;
-        var scale = viewArgs.scale;
-        var leftBase = viewArgs.leftBase;
-        var minVal = this.config.histograms.min;
-
-        domConstruct.empty( block.domNode );
-        var c = block.featureCanvas =
-            domConstruct.create(
-                'canvas',
-                { height: height,
-                  width:  block.domNode.offsetWidth+1,
-                  style: {
-                      cursor: 'default',
-                      height: height+'px',
-                      position: 'absolute'
-                  },
-                  innerHTML: 'Your web browser cannot display this type of track.',
-                  className: 'canvas-track canvas-track-histograms'
-                },
-                block.domNode
-            );
-        this.heightUpdate( height, viewArgs.blockIndex );
-        var ctx = c.getContext('2d');
-
-        // finally query the various pixel ratios
-        var ratio = Util.getResolution( ctx, this.browser.config.highResolutionMode );
-        // upscale canvas if the two ratios don't match
-        if ( this.browser.config.highResolutionMode != 'disabled' && ratio >= 1 )
-        {
-            var oldWidth = c.width;
-            var oldHeight = c.height;
-
-            c.width = oldWidth * ratio;
-            c.height = oldHeight * ratio;
-
-            c.style.width = oldWidth + 'px';
-            c.style.height = oldHeight + 'px';
-
-            // now scale the context to counter
-            // the fact that we've manually scaled
-            // our canvas element
-            ctx.scale(ratio, ratio);
-        }
-
-        ctx.fillStyle = this.config.histograms.color;
-        for( var i = 0; i<features.length; i++ ) {
-            var feature = features[i];
-            var barHeight = feature.get('score')/maxScore * height;
-            var barWidth = Math.ceil( ( feature.get('end')-feature.get('start') )*scale );
-            var barLeft = Math.round(( feature.get('start') - leftBase )*scale );
-            ctx.fillRect(
-                barLeft,
-                height-barHeight,
-                barWidth,
-                barHeight
-            );
-            if( barHeight > height ) {
-                ctx.fillStyle = this.config.histograms.clip_marker_color;
-                ctx.fillRect( barLeft, 0, barWidth, 3 );
-                ctx.fillStyle = this.config.histograms.color;
-            }
-        }
-
-        // make the y-axis scale for our histograms
-        this.makeHistogramYScale( height, minVal, maxScore );
-    },
-
-    _histBinsToFeatures: function( viewArgs, histData ) {
-        var bpPerBin = parseFloat( histData.stats.basesPerBin );
-        var leftBase = viewArgs.leftBase;
-
-        return array.map(
-            histData.bins,
-            function( bin, i ) {
-                return new SimpleFeature(
-                    { data: {
-                          start: leftBase + i*bpPerBin,
-                          end: leftBase + (i+1)*bpPerBin,
-                          score: bin
-                      }});
-            });
-    },
-
-
-    makeHistogramYScale: function( height, minVal, maxVal ) {
-        if( this.yscale_params
-            && this.yscale_params.height == height
-            && this.yscale_params.max == maxVal
-            && this.yscale_params.min == minVal
-          )
-            return;
-
-        this.yscale_params = { height: height, min: minVal, max: maxVal };
-        this.makeYScale({ min: minVal, max: maxVal });
-    },
-
-    fillFeatures: function( args ) {
-        //console.log("SVGFeatures::fillFeatures");
-        //console.dir(args);
-        
-        var thisB = this;
-
-        var blockIndex = args.blockIndex;
-        var block = args.block;
-        var blockWidthPx = block.domNode.offsetWidth;
-        var scale = args.scale;
-        var leftBase = args.leftBase;
-        var rightBase = args.rightBase;
-        var finishCallback = args.finishCallback;
-
-        var fRects = [];
-
-        // count of how many features are queued up to be laid out
-        var featuresInProgress = 0;
-        // promise that resolved when all the features have gotten laid out by their glyphs
-        var featuresLaidOut = new Deferred();
-        // flag that tells when all features have been read from the
-        // store (not necessarily laid out yet)
-        var allFeaturesRead = false;
-
-        var errorCallback = dojo.hitch( thisB, function( e ) {
-            this._handleError( e, args );
-            finishCallback(e);
-        });
-
-        var layout = this._getLayout( scale );
-
-        // query for a slightly larger region than the block, so that
-        // we can draw any pieces of glyphs that overlap this block,
-        // but the feature of which does not actually lie in the block
-        // (long labels that extend outside the feature's bounds, for
-        // example)
-        var bpExpansion = Math.round( this.config.maxFeatureGlyphExpansion / scale );
-
-        var region = { ref: this.refSeq.name,
-                       start: Math.max( 0, leftBase - bpExpansion ),
-                       end: rightBase + bpExpansion
-                     };
-        this.store.getFeatures( region,
-                                function( feature ) {
-                                    if( thisB.destroyed || ! thisB.filterFeature( feature ) )
-                                        return;
-                                    
-                                    fRects.push( null ); // put a placeholder in the fRects array
-                                    featuresInProgress++;
-                                    var rectNumber = fRects.length-1;
-
-                                    // get the appropriate glyph object to render this feature
-                                    thisB.getGlyph(
-                                        args,
-                                        feature,
-                                        function( glyph ) {
-                                            // have the glyph attempt
-                                            // to add a rendering of
-                                            // this feature to the
-                                            // layout
-                                            var fRect = glyph.layoutFeature(
-                                                args,
-                                                layout,
-                                                feature
-                                            );
-                                            if( fRect === null ) {
-                                                // could not lay out, would exceed our configured maxHeight
-                                                // mark the block as exceeding the max height
-                                                block.maxHeightExceeded = true;
-                                            }
-                                            else {
-                                                // laid out successfully
-                                                if( !( fRect.l >= blockWidthPx || fRect.l+fRect.w < 0 ) )
-                                                    fRects[rectNumber] = fRect;
-                                            }
-
-                                            // this might happen after all the features have been sent from the store
-                                            if( ! --featuresInProgress && allFeaturesRead ) {
-                                                featuresLaidOut.resolve();
-                                            }
-                                        },
-                                        errorCallback
-                                    );
-                                },
-
-                                // callback when all features sent
-                                function () {
-                                    if( thisB.destroyed )
-                                        return;
-
-                                    allFeaturesRead = true;
-                                    if( ! featuresInProgress && ! featuresLaidOut.isFulfilled() ) {
-                                        featuresLaidOut.resolve();
-                                    }
-
-                                    featuresLaidOut.then( function() {
-
-                                        var totalHeight = layout.getTotalHeight();
-                                        var c = block.featureCanvas =
-                                            domConstruct.create(
-                                                'canvas',
-                                                { height: totalHeight,
-                                                  width:  block.domNode.offsetWidth+1,
-                                                  style: {
-                                                      cursor: 'default',
-                                                      height: totalHeight+'px',
-                                                      position: 'absolute'
-                                                  },
-                                                  innerHTML: 'Your web browser cannot display this type of track.',
-                                                  className: 'canvas-track'
-                                                },
-                                                block.domNode
-                                            );
-                                        var ctx = c.getContext('2d');
-
-                                        // finally query the various pixel ratios
-                                        var ratio = Util.getResolution( ctx, thisB.browser.config.highResolutionMode );
-                                        // upscale canvas if the two ratios don't match
-                                        if ( thisB.browser.config.highResolutionMode != 'disabled' && ratio >= 1 ) {
-
-                                            var oldWidth = c.width;
-                                            var oldHeight = c.height;
-
-                                            c.width = oldWidth * ratio;
-                                            c.height = oldHeight * ratio;
-
-                                            c.style.width = oldWidth + 'px';
-                                            c.style.height = oldHeight + 'px';
-
-                                            // now scale the context to counter
-                                            // the fact that we've manually scaled
-                                            // our canvas element
-                                            ctx.scale(ratio, ratio);
-                                        }
-
-
-
-                                        if( block.maxHeightExceeded )
-                                            thisB.markBlockHeightOverflow( block );
-
-/* test
-                                        thisB.heightUpdate( totalHeight,
-                                                            blockIndex );
-*/
-                                        thisB.heightUpdate( thisB.computeHeight(),blockIndex);
-
-                                        thisB.renderFeatures( args, fRects );
-
-                                        thisB.renderClickMap( args, fRects );
-
-                                        finishCallback();
-                                    });
-                                },
-                                errorCallback
-                              );
-    },
-
-    startZoom: function() {
-        this.inherited( arguments );
-
-        array.forEach( this.blocks, function(b) {
-            try {
-                b.featureCanvas.style.width = '100%';
-            } catch(e) {};
-        });
-    },
-
-    endZoom: function() {
-        array.forEach( this.blocks, function(b) {
-            try {
-                delete b.featureCanvas.style.width;
-            } catch(e) {};
-        });
-
-        this.clear();
-        this.inherited( arguments );
-    },
-
-    renderClickMap: function( args, fRects ) {
-        return;// disable - eyao
-        
-        var block = args.block;
-
-        // make an index of the fRects by ID, and by coordinate, and
-        // store it in the block
-        var index = new FRectIndex({ h: block.featureCanvas.height, w: block.featureCanvas.width });
-        block.fRectIndex = index;
-        index.addAll( fRects );
-
-        if( ! block.featureCanvas || ! block.featureCanvas.getContext('2d') ) {
-            console.warn( "No 2d context available from canvas" );
-            return;
-        }
-
-        this._attachMouseOverEvents( );
-
-        // connect up the event handlers
-        this._connectEventHandlers( block );
-
-        this.updateStaticElements( { x: this.browser.view.getX() } );
-    },
-
-    _attachMouseOverEvents: function( ) {
-        var gv = this.browser.view;
-        var thisB = this;
-
-        if( this.displayMode == 'collapsed' ) {
-            if( this._mouseoverEvent ) {
-                this._mouseoverEvent.remove();
-                delete this._mouseoverEvent;
-            }
-
-            if( this._mouseoutEvent ) {
-                this._mouseoutEvent.remove();
-                delete this._mouseoutEvent;
-            }
-        } else {
-            if( !this._mouseoverEvent ) {
-                this._mouseoverEvent = this.own( on( this.svgCanvas, 'mousemove', function( evt ) {
-                    evt = domEvent.fix( evt );
-                    var bpX = gv.absXtoBp( evt.clientX );
-                    var feature = thisB.layout.getByCoord( bpX, ( evt.offsetY === undefined ? evt.layerY : evt.offsetY ) );
-                    thisB.mouseoverFeature( feature, evt );
-                }))[0];
-            }
-
-            if( !this._mouseoutEvent ) {
-                this._mouseoutEvent = this.own( on( this.svgCanvas, 'mouseout', function( evt) {
-                    thisB.mouseoverFeature( undefined );
-                }))[0];
-            }
-        }
-    },
-
-    _makeLabelTooltip: function( ) {
-
-        if( !this.showTooltips || this.labelTooltip )
-            return;
-
-        var labelTooltip = this.labelTooltip = domConstruct.create(
-            'div', {
-                className: 'featureTooltip',
-                style: {
-                    position: 'fixed',
-                    display: 'none',
-                    zIndex: 19
-                }
-            }, document.body );
-        domConstruct.create(
-            'span', {
-                className: 'tooltipLabel',
-                style: {
-                    display: 'block'
-                }
-            }, labelTooltip);
-        domConstruct.create(
-            'span', {
-                className: 'tooltipDescription',
-                style: {
-                    display: 'block'
-                }
-            }, labelTooltip);
-    },
-
-    _connectEventHandlers: function( block ) {
-        for( var event in this.eventHandlers ) {
-            var handler = this.eventHandlers[event];
-            (function( event, handler ) {
-                 var thisB = this;
-                 block.own(
-                     on( this.svgCanvas, event, function( evt ) {
-                             evt = domEvent.fix( evt );
-                             var bpX = thisB.browser.view.absXtoBp( evt.clientX );
-                             if( block.containsBp( bpX ) ) {
-                                 var feature = thisB.layout.getByCoord( bpX, ( evt.offsetY === undefined ? evt.layerY : evt.offsetY ) );
-                                 if( feature ) {
-                                     var fRect = block.fRectIndex.getByID( feature.id() );
-                                     handler.call({
-                                                      track: thisB,
-                                                      feature: feature,
-                                                      fRect: fRect,
-                                                      block: block,
-                                                      callbackArgs: [ thisB, feature, fRect ]
-                                                  },
-                                                  feature,
-                                                  fRect,
-                                                  block,
-                                                  thisB,
-                                                  evt
-                                                 );
-                                 }
-                             }
-                         })
-                 );
-             }).call( this, event, handler );
-        }
-    },
-
-    getRenderingContext: function( viewArgs ) {
-        if( ! viewArgs.block || ! viewArgs.block.featureCanvas )
-            return null;
-        try {
-            var ctx = viewArgs.block.featureCanvas.getContext('2d');
-            // ctx.translate( viewArgs.block.offsetLeft - this.featureCanvas.offsetLeft, 0 );
-            // console.log( viewArgs.blockIndex, 'block offset', viewArgs.block.offsetLeft - this.featureCanvas.offsetLeft );
-            return ctx;
-        } catch(e) {
-            console.error(e, e.stack);
-            return null;
-        }
-    },
-
-    // draw the features on the canvas
-    renderFeatures: function( args, fRects ) {
-        console.log("SVGFeatures::renderFeatures");
-        
-        var context = this.getRenderingContext( args );
-        if( context ) {
-            var thisB = this;
-            var count = 0;
-            
-            array.forEach( fRects, function( fRect ) {
-                if( fRect ) {
-                   
-                    thisB.renderFeature( context, fRect );
-                    count++;
-                }
-            });
-        }
-    },
-
-    // given viewargs and a feature object, highlight that feature in
-    // all blocks.  if feature is undefined or null, unhighlight any currently
-    // highlighted feature
-    mouseoverFeature: function( feature, evt ) {
-
-        if( this.lastMouseover == feature )
-            return;
-
-        if( evt )
-            var bpX = this.browser.view.absXtoBp( evt.clientX );
-
-        if( this.labelTooltip)
-            this.labelTooltip.style.display = 'none';
-
-        array.forEach( this.blocks, function( block, i ) {
-            if( ! block )
-                return;
-            var context = this.getRenderingContext({ block: block, leftBase: block.startBase, scale: block.scale });
-            if( ! context )
-                return;
-
-            if( this.lastMouseover && block.fRectIndex ) {
-                var r = block.fRectIndex.getByID( this.lastMouseover.id() );
-                if( r )
-                    this.renderFeature( context, r );
-            }
-
-            if( block.tooltipTimeout )
-                window.clearTimeout( block.tooltipTimeout );
-
-            if( feature ) {
-                var fRect = block.fRectIndex && block.fRectIndex.getByID( feature.id() );
-                if( ! fRect )
-                    return;
-
-                if( block.containsBp( bpX ) ) {
-                    var renderTooltip = dojo.hitch( this, function() {
-                        if( !this.labelTooltip )
-                            return;
-                        var label = fRect.label || fRect.glyph.makeFeatureLabel( feature );
-                        var description = fRect.description || fRect.glyph.makeFeatureDescriptionLabel( feature );
-
-                        if( ( !label && !description ) )
-                            return;
-
-                        if( !this.ignoreTooltipTimeout ) {
-                            this.labelTooltip.style.left = evt.clientX + "px";
-                            this.labelTooltip.style.top = (evt.clientY + 15) + "px";
-                        }
-                        this.ignoreTooltipTimeout = true;
-                        this.labelTooltip.style.display = 'block';
-                        var labelSpan = this.labelTooltip.childNodes[0],
-                            descriptionSpan = this.labelTooltip.childNodes[1];
-
-                        if( this.config.onClick&&this.config.onClick.label ) {
-                            var context = lang.mixin( { track: this, feature: feature, callbackArgs: [ this, feature ] } );
-                            labelSpan.style.display = 'block';
-                            labelSpan.style.font = label.font;
-                            labelSpan.style.color = label.fill;
-                            labelSpan.innerHTML = this.template( feature, this._evalConf( context, this.config.onClick.label, "label" ) );
-                            return;
-                        }
-                        if( label ) {
-                            labelSpan.style.display = 'block';
-                            labelSpan.style.font = label.font;
-                            labelSpan.style.color = label.fill;
-                            labelSpan.innerHTML = label.text;
-                        } else {
-                            labelSpan.style.display = 'none';
-                            labelSpan.innerHTML = '(no label)';
-                        }
-                        if( description ) {
-                            descriptionSpan.style.display = 'block';
-                            descriptionSpan.style.font = description.font;
-                            descriptionSpan.style.color = description.fill;
-                            descriptionSpan.innerHTML = description.text;
-                        }
-                        else {
-                            descriptionSpan.style.display = 'none';
-                            descriptionSpan.innerHTML = '(no description)';
-                        }
-                    });
-                    if( this.ignoreTooltipTimeout )
-                        renderTooltip();
-                    else
-                        block.tooltipTimeout = window.setTimeout( renderTooltip, 600);
-                }
-
-                fRect.glyph.mouseoverFeature( context, fRect );
-                this._refreshContextMenu( fRect );
-            } else {
-                block.tooltipTimeout = window.setTimeout( dojo.hitch(this, function() { this.ignoreTooltipTimeout = false; }), 200);
-            }
-        }, this );
-
-        this.lastMouseover = feature;
-    },
-
-    cleanupBlock: function(block) {
-        this.inherited( arguments );
-
-        // garbage collect the layout
-        if ( block && this.layout )
-            this.layout.discardRange( block.startBase, block.endBase );
-    },
-
-    // draw each feature
-    renderFeature: function( context, fRect ) {
-	console.log("SVGFeatures::renderFeature");
-        
-        //fRect.glyph.renderFeature( context, fRect );  // -- bypass actually drawing anything.
-        
-        this.renderSVGFeature(context ,fRect);
-
-    },
-    
-    renderSVGFeature: function( context, fRect ) {
-        var id = "L-"+this.fixId(fRect.f.id());
-        var feature = fRect.f;
-        
-        // given the bp coordinate of the feature, get the x position in the SVG coord space.
-        var bpCoord = feature.get("start");
-        var cx = this.bp2px(bpCoord);
-        var len = this.svgScale * (feature.get("end") - feature.get("start") ) / 5;
-        len = this.svgHeight - len;
-        //console.log("cx="+cx+" len="+len);
-        
-        // create svg element
-        
-        if (id in this.svgCanvas.featureGroup.fItem ) { 
-            var svgItem = this.svgCanvas.featureGroup.fItem[id];        // element already exists 
-        }
-        else {
-            var svgItem = document.createElementNS('http://www.w3.org/2000/svg','line');
-            svgItem.setAttribute('id',id);
-            svgItem.setAttribute('bpCoord', bpCoord);
-            svgItem.bpCoord = bpCoord;
-            this.svgCanvas.featureGroup.fItem[id] = svgItem;
-            this.svgCanvas.featureGroup.appendChild(svgItem);
-        }
-
-        svgItem.feature = feature;
-        svgItem.setAttribute('x1',cx);
-        svgItem.setAttribute('y1',len);
-        svgItem.setAttribute('x2',cx);
-        svgItem.setAttribute('y2',this.svgHeight);
-        svgItem.setAttribute('stroke','grey');
-        svgItem.setAttribute('stroke-width',1);
-        //svgItem.setAttribute('style', 'x1:'+cx+';y1:'+len+';x2:'+cx+';y2:'+this.svgHeight+';stroke:grey;stroke-width:1');
-        svgItem.setAttribute('display', 'block');
-        
-        var id = "C-"+this.fixId(fRect.f.id());
-        //var feature = fRect.f;
-        
-        // given the bp coordinate of the feature, get the x position in the SVG coord space.
-        //var bpCoord = feature.get("start");
-        //var cx = this.bp2px(bpCoord);
-        //var len = this.svgScale * (feature.get("end") - feature.get("start") ) / 5;
-        //len = this.svgHeight - len;
-        //console.log("cx="+cx+" len="+len);
-        
-        // create svg element
-        
-        if (id in this.svgCanvas.featureGroup.fItem ) { 
-            var svgItem = this.svgCanvas.featureGroup.fItem[id];        // element already exists 
-        }
-        else {
-            var svgItem = document.createElementNS('http://www.w3.org/2000/svg','circle');
-            svgItem.setAttribute('id',id);
-            svgItem.setAttribute('bpCoord', bpCoord);
-            svgItem.bpCoord = bpCoord;
-            this.svgCanvas.featureGroup.fItem[id] = svgItem;
-            this.svgCanvas.featureGroup.appendChild(svgItem);
-        }
-
-        svgItem.feature = feature;
-        svgItem.setAttribute('style', 'cx:'+cx+';cy:'+len+';r:10;fill:rgba(0,0,255,.5)');
-        svgItem.setAttribute('display', 'block');
-       
-    },
-    
-    _trackMenuOptions: function () {
-        var opts = this.inherited(arguments);
-        var thisB = this;
-
-        var displayModeList = ["normal", "compact", "collapsed"];
-        this.displayModeMenuItems = displayModeList.map(function(displayMode) {
-            return {
-                label: displayMode,
-                type: 'dijit/CheckedMenuItem',
-                title: "Render this track in " + displayMode + " mode",
-                checked: thisB.displayMode == displayMode,
-                onClick: function() {
-                    thisB.displayMode = displayMode;
-                    thisB._clearLayout();
-                    thisB.hideAll();
-                    thisB.genomeView.showVisibleBlocks(true);
-                    thisB.makeTrackMenu();
-
-                    // set cookie for displayMode
-                    thisB.browser.cookie('track-' + thisB.name, thisB.displayMode);
-                }
-            };
-        });
-
-        var updateMenuItems = dojo.hitch(this, function() {
-            for(var index in this.displayModeMenuItems) {
-                this.displayModeMenuItems[index].checked = (this.displayMode == this.displayModeMenuItems[index].label);
-            }
-        });
-
-        opts.push.apply(
-            opts,
-            [
-                { type: 'dijit/MenuSeparator' },
-                {
-                    label: "Display mode",
-                    iconClass: "dijitIconPackage",
-                    title: "Make features take up more or less space",
-                    children: this.displayModeMenuItems
-                },
-                { label: 'Show labels',
-                  type: 'dijit/CheckedMenuItem',
-                  checked: !!( 'showLabels' in this ? this.showLabels : this.config.style.showLabels ),
-                  onClick: function(event) {
-                      thisB.showLabels = this.checked;
-                      thisB.changed();
-                  }
-                }
-            ]
-        );
-
-        return opts;
-    },
-
-    _exportFormats: function() {
-        return [ {name: 'GFF3', label: 'GFF3', fileExt: 'gff3'}, {name: 'BED', label: 'BED', fileExt: 'bed'}, { name: 'SequinTable', label: 'Sequin Table', fileExt: 'sqn' } ];
-    },
-
-    updateStaticElements: function( coords ) {
-        this.inherited( arguments );
-
-        this.updateYScaleFromViewDimensions( coords );
-
-        if( coords.hasOwnProperty("x") ) {
-            //var context = this.svgCanvas.getContext('2d'); //eyao
-// eyao test
-//            this.svgCanvas.width = this.browser.view.elem.clientWidth;
-//            this.svgCanvas.style.left = coords.x + "px";
-            //context.clearRect(0, 0, this.svgCanvas.width, this.svgCanvas.height); // eyao
-
-            var minVisible = this.browser.view.minVisible();
-            var maxVisible = this.browser.view.maxVisible();
-            var viewArgs = {
-                minVisible: minVisible,
-                maxVisible: maxVisible,
-                bpToPx: dojo.hitch(this.browser.view, "bpToPx"),
-                lWidth: this.label.offsetWidth
-            };
-
-            array.forEach( this.blocks, function(block) {
-                if( !block || !block.fRectIndex )
-                    return;
-
-                var idx = block.fRectIndex.byID;
-                for( var id in idx ) {
-                     var fRect = idx[id];
-                      //fRect.glyph.updateStaticElements( context, fRect, viewArgs ); //eyao
-                }
-            }, this );
-        }
-    },
-
-    heightUpdate: function( height, blockIndex ) {
-        //console.log("SVGFeatures::heightUpdate("+height+")");
-        //console.dir(arguments);
-        //var err = new Error();
-        //console.log(err.stack);
-        
-        this.inherited( arguments );
-        if( this.svgCanvas )
-            this.svgCanvas.height = this.svgCanvas.offsetHeight;
-    },
-
-    destroy: function() {
-        this.destroyed = true;
-
-        domConstruct.destroy( this.svgCanvas );
-        delete this.svgCanvas;
-
-        delete this.layout;
-        delete this.glyphsLoaded;
-        this.inherited( arguments );
-    }
-});
-});
diff --git a/plugins/SVGLollipopTrack/js/SVGLollipopTrack.profile.js b/plugins/SVGLollipopTrack/js/SVGLollipopTrack.profile.js
deleted file mode 100644
index 503caf7fd8..0000000000
--- a/plugins/SVGLollipopTrack/js/SVGLollipopTrack.profile.js
+++ /dev/null
@@ -1,62 +0,0 @@
-function copyOnly(mid) {
-    return mid in {
-        // There are no modules right now that are copy-only. If you have some, though, just add
-        // them here like this:
-        // 'app/module': 1
-    };
-}
-
-var profile = {
-    action: 'release',
-    cssOptimize: 'comments',
-    mini: true,
-
-    basePath: '../../../src',
-    packages: [
-        {name: 'SVGLollipopTrack', location: '../plugins/SVGLollipopTrack/js' }
-    ],
-
-    layerOptimize: 'closure',
-    stripConsole: 'normal',
-    selectorEngine: 'acme',
-
-    layers: {
-        'SVGLollipopTrack/main': {
-            include: [
-                'SVGLollipopTrack',
-            ],
-            exclude: [ 'JBrowse' ]
-        }
-    },
-
-    staticHasFeatures: {
-        'dojo-trace-api':0,
-        'dojo-log-api':0,
-        'dojo-publish-privates':0,
-        'dojo-sync-loader':0,
-        'dojo-xhr-factory':0,
-        'dojo-test-sniff':0
-    },
-
-    resourceTags: {
-        // Files that contain test code.
-        test: function (filename, mid) {
-            return false;
-        },
-
-        // Files that should be copied as-is without being modified by the build system.
-        copyOnly: function (filename, mid) {
-            return copyOnly(mid);
-        },
-
-        // Files that are AMD modules.
-        amd: function (filename, mid) {
-            return !copyOnly(mid) && /.js$/.test(filename);
-        },
-
-        // Files that should not be copied when the “mini” compiler flag is set to true.
-        miniExclude: function (filename, mid) {
-            return ! ( /^SVGLollipopTrack/.test(mid) );
-        }
-    }
-};
diff --git a/release-notes.txt b/release-notes.txt
index 38085515d1..4a19393a4d 100644
--- a/release-notes.txt
+++ b/release-notes.txt
@@ -1,10 +1,18 @@
 {{$NEXT}}
 
- * Add `disableCollapsedClick` and `enableCollapsedMouseover` options. The
+## Major improvements
+
+
+
+## Minor Improvements
+
+  * Add `disableCollapsedClick` and `enableCollapsedMouseover` options. The
     `enableCollapsedMouseover` option is useful when features do not overlap e.g. chromosome
     segmentation and `disableCollapsedClick` is useful when the collapsed features are very
     dense. Thanks to @rdhayes for tips (issue #544, pull #870, @cmdcolin)
 
+  * Removed JBrowse 1.2.1 compatibility support. Please use JBrowse 1.12.5 or earlier
+    if you still have old data formatted with JBrowse 1.2.1. (@rbuels)
 
 # Release 1.12.5     2018-02-28 20:08:35 UTC
 
diff --git a/setup.sh b/setup.sh
index e010d398a1..619d106ca7 100755
--- a/setup.sh
+++ b/setup.sh
@@ -32,27 +32,9 @@ function check_node(){
         echo "npm version 2 or later must be installed.  Please install an updated version of node.js by following the instructions appropriate for your system https://nodejs.org/en/download/package-manager/";
         exit 1
     fi
-    echo "Node installed";
+    echo "Node installed at $node_executable with npm $NPM_VERSION";
 }
 
-echo > setup.log;
-
-echo "NOTE: Legacy scripts wig-to-json.pl and bam-to-json.pl have removed from setup. Their functionality has been superseded by add-bam-track.pl and add-bw-track.pl. If you require the old versions, please use JBrowse 1.12.3 or earlier."
-
-# if src/dojo/dojo.js exists, but that is the only file in that directory (or other directories don't exist)
-# OR
-# if dev we don't care
-echo  -n "Installing javascript dependencies ..."
-if [ -f "src/dojo/dojo.js" ] && ! [ -f "src/dojo/_firebug/firebug.js" ]; then
-    echo "Detected precompiled version." ;
-elif ! [ -f "src/dojo/dojo.js" ]; then
-    echo "Dojo does not exist, installing" ;
-    check_node;
-    npm install;
-fi
-echo "done"
-
-
 # log information about this system
 echo -n "Gathering system information ..."
 (
@@ -95,6 +77,22 @@ if [ $? -eq 0 ]; then
     fi
 fi
 
+echo "NOTE: Legacy scripts wig-to-json.pl and bam-to-json.pl have removed from setup. Their functionality has been superseded by add-bam-track.pl and add-bw-track.pl. If you require the old versions, please use JBrowse 1.12.3 or earlier."
+
+# if we are running in a development build, then run npm install and run the webpack build.
+if [ -f "src/JBrowse/Browser.js" ]; then
+    echo "Installing javascript dependencies and building with Webpack ..."
+    (
+        check_node
+        set -e
+        npm install
+        npm run build
+    ) 2>&1 | tee setup.log;
+    echo "done with node install and build"
+else
+    echo "Minimal release detected, skipping node and Webpack build"
+fi
+
 echo  -n "Installing Perl prerequisites ..."
 if ! ( perl -MExtUtils::MakeMaker -e 1 >/dev/null 2>&1); then
     echo;
diff --git a/src/JBrowse/Browser.js b/src/JBrowse/Browser.js
index 6dc8285b7b..f2461c1057 100644
--- a/src/JBrowse/Browser.js
+++ b/src/JBrowse/Browser.js
@@ -51,9 +51,13 @@ define( [
             'JBrowse/View/Dialog/QuickHelp',
             'JBrowse/View/StandaloneDatasetList',
             'dijit/focus',
-            'lazyload', // for dynamic CSS loading
+            '../lazyload.js', // for dynamic CSS loading
             'dojo/text!./package.json',
-            'dojo/domReady!'
+
+
+            // extras for webpack
+            'dojox/data/CsvStore',
+            'dojox/data/JsonRestStore'
         ],
         function(
             declare,
@@ -115,6 +119,11 @@ define( [
 
 var dojof = Util.dojof;
 
+require.on('error', function(error) {
+    let errString = error.info && error.info[0] && error.info[0].mid ? error.info.map(({mid})=>mid).join(', ') : error;
+    window.JBrowse.fatalError('Failed to load resource: '+errString);
+});
+
 /**
  * Construct a new Browser object.
  * @class This class is the main interface between JBrowse and embedders
@@ -293,28 +302,22 @@ initPlugins: function() {
             return typeof p == 'object' ? p : { 'name': p };
         });
 
-        if( ! plugins ) {
+        if( ! plugins.length ) {
             deferred.resolve({success: true});
             return;
         }
 
         // set default locations for each plugin
-        array.forEach( plugins, function(p) {
-            if( !( 'location' in p ))
-                p.location = 'plugins/'+p.name;
-
-            var resolved = this.resolveUrl( p.location );
-
-            // figure out js path
-            if( !( 'js' in p ))
-                p.js = p.location+"/js"; //URL resolution for this is taken care of by the JS loader
-            if( p.js.charAt(0) != '/' && ! /^https?:/i.test( p.js ) )
-                p.js = '../'+p.js;
-
-            // figure out css path
-            if( !( 'css' in p ))
-                p.css = resolved+"/css";
-        },this);
+        plugins.forEach( p => {
+            // find the entry in the dojoConfig for this plugin
+            let configEntry = dojoConfig.packages.find(c => c.name === p.name)
+            if( ! configEntry )
+                this.fatalError(`plugin ${p.name} not found, please ensure the plugin was included in this JBrowse build`)
+
+            p.location = configEntry.location
+            p.css = configEntry.pluginDir+'css'
+            p.js = configEntry.location
+        });
 
         var pluginDeferreds = array.map( plugins, function(p) {
             return new Deferred();
@@ -324,15 +327,8 @@ initPlugins: function() {
         (new DeferredList( pluginDeferreds ))
             .then( function() { deferred.resolve({success: true}); });
 
-        require( {
-                     packages: array.map( plugins, function(p) {
-                                              return {
-                                                  name: p.name,
-                                                  location: p.js
-                                              };
-                                          }, this )
-                 },
-                 array.map( plugins, function(p) { return p.name; } ),
+        dojo.global.require(
+                 array.map( plugins, function(p) { return p.name+'/main' } ),
                  dojo.hitch( this, function() {
                      array.forEach( arguments, function( pluginClass, i ) {
                              var plugin = plugins[i];
@@ -609,7 +605,7 @@ loadNames: function() {
             var thisB = this;
             if( type.indexOf('/') == -1 )
                 type = 'JBrowse/Store/Names/'+type;
-            require ([type], function (CLASS){
+            dojo.global.require ([type], function (CLASS){
                 thisB.nameStore = new CLASS( dojo.mixin({ browser: thisB }, conf) );
                 deferred.resolve({success: true});
             });
@@ -1787,7 +1783,7 @@ getStore: function( storeName, callback ) {
         return;
     }
 
-    require( [ storeClassName ], dojo.hitch( this, function( storeClass ) {
+    dojo.global.require( [ storeClassName ], dojo.hitch( this, function( storeClass ) {
                  var storeArgs = {};
                  dojo.mixin( storeArgs, conf );
                  dojo.mixin( storeArgs,
@@ -2307,7 +2303,7 @@ initTrackMetadata: function( callback ) {
                                     });
 
 
-        require( Array.prototype.concat.apply( ['JBrowse/Store/TrackMetaData'],
+        dojo.global.require( Array.prototype.concat.apply( ['JBrowse/Store/TrackMetaData'],
                                                dojo.map( metaDataSourceClasses, function(c) { return c.class_; } ) ),
                  dojo.hitch(this,function( MetaDataStore ) {
                      var mdStores = [];
@@ -2342,7 +2338,7 @@ createTrackList: function() {
             tl_class = 'JBrowse/View/TrackList/'+tl_class;
 
         // load all the classes we need
-        require( [ tl_class ],
+        dojo.global.require( [ tl_class ],
                  dojo.hitch( this, function( trackListClass ) {
                      // instantiate the tracklist and the track metadata object
                      this.trackListView = new trackListClass(
diff --git a/src/JBrowse/GenomeView.js b/src/JBrowse/GenomeView.js
index c97336b74d..9803bfa1ad 100755
--- a/src/JBrowse/GenomeView.js
+++ b/src/JBrowse/GenomeView.js
@@ -2311,7 +2311,7 @@ renderTrack: function( /**Object*/ trackConfig ) {
         });
 
     // get the track class
-    require( [ trackConfig.type ], function( class_ ) {
+    dojo.global.require( [ trackConfig.type ], function( class_ ) {
         if(typeof class_ === "string") {
             console.error("Failed to load module: "+trackConfig.type);
             return;
@@ -2324,14 +2324,14 @@ renderTrack: function( /**Object*/ trackConfig ) {
     return trackDiv;
 },
 /**
- * 
+ *
  * @param {type} track
  * @param {type} state
  * @returns {undefined}
  */
 setTrackFocus: function(track,state) {
     var thisB = this;
-    
+
     if (state === 1) {
         if (this.focusTrack !== null) {
 
diff --git a/src/JBrowse/JBrowse.profile.js b/src/JBrowse/JBrowse.profile.js
deleted file mode 100644
index 3084c6fa1b..0000000000
--- a/src/JBrowse/JBrowse.profile.js
+++ /dev/null
@@ -1,155 +0,0 @@
-// This function is used to determine whether or not a resource should be tagged as copy-only. See the resourceTags
-// property below for more information.
-function copyOnly(mid) {
-    return mid in {
-        // There are no modules right now that are copy-only. If you have some, though, just add
-        // them here like this:
-        // 'app/module': 1
-    };
-}
-
-var profile = {
-    // basePath is relative to the directory containing this profile file; in this case, it is being set to the
-    // src/ directory, which is the same place as the baseUrl directory in the loader configuration. (If you change
-    // this, you will also need to update run.js).
-    basePath: '..',
-
-    // This is the directory within the release directory where built packages will be placed. The release directory
-    // itself is defined by build.sh. You really probably should not use this; it is a legacy option from very old
-    // versions of Dojo (like, version 0.1). If you do use it, you will need to update build.sh, too.
-    // releaseName: '',
-
-    // Builds a new release.
-    action: 'release',
-
-    // Strips all comments from CSS files.
-    cssOptimize: 'comments',
-
-    // Excludes tests, demos, and original template files from being included in the built version.
-    mini: true,
-
-    // Uses Closure Compiler as the JavaScript minifier. This can also be set to "shrinksafe" to use ShrinkSafe.
-    // Note that you will probably get some “errors” with CC; these are generally safe to ignore, and will be
-    // fixed in a later version of Dojo. This defaults to "" (no compression) if not provided.
-    //optimize: 'closure',
-
-    // We’re building layers, so we need to set the minifier to use for those, too. This defaults to "shrinksafe" if
-    // it is not provided.
-    layerOptimize: 'closure',
-
-    // Strips all calls to console functions within the code. You can also set this to "warn" to strip everything
-    // but console.error, and any other truthy value to strip everything but console.warn and console.error.
-    stripConsole: 'normal',
-
-    // The default selector engine is not included by default in a dojo.js build in order to make mobile builds
-    // smaller. We add it back here to avoid that extra HTTP request. There is also a "lite" selector available; if
-    // you use that, you’ll need to set selectorEngine in app/run.js too. (The "lite" engine is only suitable if you
-    // are not supporting IE7 and earlier.)
-    selectorEngine: 'lite',
-
-    // Builds can be split into multiple different JavaScript files called “layers”. This allows applications to
-    // defer loading large sections of code until they are actually required while still allowing multiple modules to
-    // be compiled into a single file.
-    layers: {
-        // This is the main loader module. It is a little special because it is treated like an AMD module even though
-        // it is actually just plain JavaScript. There is some extra magic in the build system specifically for this
-        // module ID.
-        'dojo/dojo': {
-            include: [ 'dojo/dojo', 'JBrowse', 'dojox/data/CsvStore', 'jszlib' ],
-            boot: true,
-            customBase: true
-        },
-
-        'JBrowse/View/TrackList/Faceted': {
-            include: [ 'JBrowse/View/TrackList/Faceted' ],
-            exclude: ['JBrowse']
-        },
-
-        'JBrowse/View/TrackList/Simple': {
-            include: [ 'JBrowse/View/TrackList/Simple' ],
-            exclude: ['JBrowse']
-        },
-
-        'JBrowse/Store/SeqFeature/BigWig': {
-            include: [ 'JBrowse/Store/SeqFeature/BigWig' ],
-            exclude: ['JBrowse']
-        },
-
-        'JBrowse/Store/SeqFeature/VCFTabix': {
-            include: [ 'JBrowse/Store/SeqFeature/VCFTabix' ],
-            exclude: ['JBrowse']
-        },
-        'JBrowse/Store/SeqFeature/GFF3Tabix': {
-            include: [ 'JBrowse/Store/SeqFeature/GFF3Tabix' ],
-            exclude: ['JBrowse']
-        },
-        'JBrowse/Store/SeqFeature/BEDTabix': {
-            include: [ 'JBrowse/Store/SeqFeature/BEDTabix' ],
-            exclude: ['JBrowse']
-        },
-        'JBrowse/Store/SeqFeature/BAM': {
-            include: [ 'JBrowse/Store/SeqFeature/BAM' ],
-            exclude: ['JBrowse']
-        },
-
-        'JBrowse/View/Track/CanvasFeatures': {
-            include: [
-                'JBrowse/View/Track/CanvasFeatures',
-                'JBrowse/View/FeatureGlyph',
-                'JBrowse/View/FeatureGlyph/Box',
-                'JBrowse/View/FeatureGlyph/Segments',
-                'JBrowse/View/FeatureGlyph/Gene',
-                'JBrowse/View/FeatureGlyph/Alignment'
-            ],
-            exclude: ['JBrowse']
-        }
-    },
-
-    // Providing hints to the build system allows code to be conditionally removed on a more granular level than
-    // simple module dependencies can allow. This is especially useful for creating tiny mobile builds.
-    // Keep in mind that dead code removal only happens in minifiers that support it! Currently, ShrinkSafe does not
-    // support dead code removal; Closure Compiler and UglifyJS do.
-    staticHasFeatures: {
-        // The trace & log APIs are used for debugging the loader, so we don’t need them in the build
-        'dojo-trace-api':0,
-        'dojo-log-api':0,
-
-        // This causes normally private loader data to be exposed for debugging, so we don’t need that either
-        'dojo-publish-privates':0,
-
-        // We’re fully async, so get rid of the legacy loader
-        'dojo-sync-loader':0,
-
-        // dojo-xhr-factory relies on dojo-sync-loader
-        'dojo-xhr-factory':0,
-
-        // We aren’t loading tests in production
-        'dojo-test-sniff':0
-    },
-
-    // Resource tags are functions that provide hints to the compiler about a given file. The first argument is the
-    // filename of the file, and the second argument is the module ID for the file.
-    resourceTags: {
-        // Files that contain test code.
-        test: function (filename, mid) {
-            return false;
-        },
-
-        // Files that should be copied as-is without being modified by the build system.
-        copyOnly: function (filename, mid) {
-            return copyOnly(mid);
-        },
-
-        // Files that are AMD modules.
-        amd: function (filename, mid) {
-            return !copyOnly(mid) && /\.js$/.test(filename);
-        },
-
-        // Files that should not be copied when the “mini” compiler flag is set to true.
-        miniExclude: function (filename, mid) {
-            return mid in {
-                'JBrowse/profile': 1
-            };
-        }
-    }
-};
diff --git a/src/JBrowse/Model/DataView.js b/src/JBrowse/Model/DataView.js
index efddd06802..74e2a8af6f 100644
--- a/src/JBrowse/Model/DataView.js
+++ b/src/JBrowse/Model/DataView.js
@@ -1,17 +1,25 @@
+const jDataViewOld = cjsRequire('../../jdataview-1.1-patch.X')
+const deprecate = cjsRequire('util-deprecate')
+
 /**
  * Subclass of jDataView with a getUint64 method.
  */
 define([
-           'jDataView'
-       ],
-       function( jDataView ) {
+
+], function(
+
+) {
 
 var DataView = function() {
-    jDataView.apply( this, arguments );
-};
+    jDataViewOld.apply( this, arguments );
+}
+
+// jDataView, in the version that JBrowse is using it, does not conform to the DataView API as
+// it was eventually settled. We need to move away from using it.
+DataView = deprecate(DataView,'JBrowse/Model/DataView is deprecated, please migrate to something else');
 
 try {
-    DataView.prototype = new jDataView( new ArrayBuffer([1]), 0, 1 );
+    DataView.prototype = new jDataViewOld( new ArrayBuffer([1]), 0, 1 );
 } catch(e) {
     console.error(e);
 }
diff --git a/src/JBrowse/Model/TabixIndex.js b/src/JBrowse/Model/TabixIndex.js
index 430d3ba6fd..c443ebac10 100644
--- a/src/JBrowse/Model/TabixIndex.js
+++ b/src/JBrowse/Model/TabixIndex.js
@@ -3,7 +3,7 @@ define([
            'dojo/_base/array',
            'dojo/_base/Deferred',
            'JBrowse/has',
-           'jDataView',
+           'JBrowse/Model/DataView',
            'JBrowse/Util',
            'JBrowse/Model/BGZip/VirtualOffset'
        ],
diff --git a/src/JBrowse/Util.js b/src/JBrowse/Util.js
index d075e3c544..ff597cf4f0 100644
--- a/src/JBrowse/Util.js
+++ b/src/JBrowse/Util.js
@@ -248,7 +248,7 @@ Util = {
 
     loadJS: function( paths ) {
         var d = new Deferred();
-        require( paths, function() {
+        dojo.global.require( paths, function() {
             var modules = Array.prototype.slice.call( arguments );
 
             // check the loaded modules for success
diff --git a/src/JBrowse/View/Track/CanvasFeatures.js b/src/JBrowse/View/Track/CanvasFeatures.js
index 64dcf15f78..f32cb936e6 100644
--- a/src/JBrowse/View/Track/CanvasFeatures.js
+++ b/src/JBrowse/View/Track/CanvasFeatures.js
@@ -326,7 +326,7 @@ return declare(
             this.glyphsBeingLoaded[glyphClassName] = [callback];
 
 
-            require( [glyphClassName], function( GlyphClass ) {
+            dojo.global.require( [glyphClassName], function( GlyphClass ) {
                          if( typeof GlyphClass == 'string' ) {
                              thisB.fatalError = "could not load glyph "+glyphClassName;
                              thisB.redraw();
diff --git a/src/JBrowse/View/Track/Combination.js b/src/JBrowse/View/Track/Combination.js
index 2e0ad1e64e..cf44c199a5 100644
--- a/src/JBrowse/View/Track/Combination.js
+++ b/src/JBrowse/View/Track/Combination.js
@@ -625,7 +625,7 @@ renderResultsTrack: function() {
         };
 
         // Loads the track class from the specified path
-        require([trackClassName], function(tc) {
+        dojo.global.require([trackClassName], function(tc) {
                     trackClass = tc;
                     if(trackClass) makeTrack();
                 });
diff --git a/src/JBrowse/View/Track/_ExportMixin.js b/src/JBrowse/View/Track/_ExportMixin.js
index d89c7221d1..2c4c90d010 100644
--- a/src/JBrowse/View/Track/_ExportMixin.js
+++ b/src/JBrowse/View/Track/_ExportMixin.js
@@ -277,7 +277,8 @@ return declare( null, {
                           + "currently-visible reference sequence" );
             return;
         }
-        require( [format.match(/\//)?format:'JBrowse/View/Export/'+format], dojo.hitch(this,function( exportDriver ) {
+
+        dojo.global.require( [format.match(/\//)?format:'JBrowse/View/Export/'+format], dojo.hitch(this,function( exportDriver ) {
             new exportDriver({
                 refSeq: this.refSeq,
                 track: this,
diff --git a/src/JBrowse/init.js b/src/JBrowse/init.js
deleted file mode 100644
index d214254ebe..0000000000
--- a/src/JBrowse/init.js
+++ /dev/null
@@ -1,16 +0,0 @@
-require( {
-           packages: [
-               'dgrid',
-               'dstore',
-               'dojo',
-               'dijit',
-               'dojox',
-               'json-schema',
-               'jszlib',
-               { name: 'lazyload', main: 'lazyload' },
-               { name: 'jDataView', location: 'jDataView/src', main: 'jdataview' },
-               'FileSaver',
-               'JBrowse'
-           ]
-         }
-);
diff --git a/src/JBrowse/main.js b/src/JBrowse/main.js
index 0f4e0a982f..0cc8859027 100644
--- a/src/JBrowse/main.js
+++ b/src/JBrowse/main.js
@@ -1,33 +1,105 @@
-// saves some loading time by loading most of the commonly-used
-// JBrowse modules at the outset
+import 'babel-polyfill'
+
 require([
-            'JBrowse/Browser',
-            'JBrowse/ConfigAdaptor/JB_json_v1',
-
-            // default tracklist view
-            'JBrowse/View/TrackList/Hierarchical',
-
-            // common stores
-            'JBrowse/Store/Sequence/StaticChunked',
-            'JBrowse/Store/SeqFeature/NCList',
-            'JBrowse/Store/TiledImage/Fixed',
-            'JBrowse/Store/Names/Hash',
-            'JBrowse/Store/Names/REST',
-
-            // common track views
-            'JBrowse/View/Track/Sequence',
-            'JBrowse/View/Track/HTMLFeatures',
-            'JBrowse/View/Track/FixedImage/Wiggle',
-            'JBrowse/View/Track/Wiggle',
-            'JBrowse/View/Track/Wiggle/XYPlot',
-            'JBrowse/View/Track/Wiggle/Density',
-            'JBrowse/View/Track/Alignments',
-            'JBrowse/View/Track/Alignments2',
-            'JBrowse/View/Track/FeatureCoverage',
-            'JBrowse/View/Track/SNPCoverage',
-
-            // track lists
-            'JBrowse/Store/TrackMetaData',
-            'dojox/gfx/svg',
-            'dstore/Memory'
-        ]);
+    'JBrowse/Browser',
+    'JBrowse/QueryParamConfigMapper',
+    'dojo/io-query',
+    'dojo/json',
+    'css!../../css/genome.css',
+
+    // instruct build/glob-loader.js to insert includes for every bit of JBrowse and plugin code
+    //!! glob-loader, please include every JBrowse and plugin module here
+
+],
+function (
+    Browser,
+    QueryParamConfigMapper,
+    ioQuery,
+    JSON,
+    conf
+) {
+    // the initial configuration of this JBrowse
+    // instance
+
+    // NOTE: this initial config is the same as any
+    // other JBrowse config in any other file.  this
+    // one just sets defaults from URL query params.
+    // If you are embedding JBrowse in some other app,
+    // you might as well just set this initial config
+    // to something like { include: '../my/dynamic/conf.json' },
+    // or you could put the entire
+    // dynamically-generated JBrowse config here.
+
+    // parse the query vars in the page URL
+    var queryParams = ioQuery.queryToObject( window.location.search.slice(1) );
+
+    var config = {
+        containerID: "GenomeBrowser",
+
+        dataRoot: queryParams.data,
+        queryParams: queryParams,
+        location: queryParams.loc,
+        forceTracks: queryParams.tracks,
+        initialHighlight: queryParams.highlight,
+        show_nav: queryParams.nav,
+        show_tracklist: queryParams.tracklist,
+        show_overview: queryParams.overview,
+        show_menu: queryParams.menu,
+        show_fullviewlink: queryParams.fullviewlink,
+        show_tracklabels: queryParams.tracklabels,
+        update_browser_title: queryParams.browsertitle,
+        highResolutionMode: queryParams.highres,
+        stores: { url: { type: "JBrowse/Store/SeqFeature/FromConfig", features: [] } },
+        bookmarks: { },
+        makeFullViewURL: function( browser ) {
+
+            // the URL for the 'Full view' link
+            // in embedded mode should be the current
+            // view URL, except with 'nav', 'tracklist',
+            // and 'overview' parameters forced to 1.
+
+            return browser.makeCurrentViewURL({ nav: 1, tracklist: 1, overview: 1 });
+        },
+        updateBrowserURL: true
+    };
+
+    //if there is ?addFeatures in the query params,
+    //define a store for data from the URL
+    if( queryParams.addFeatures ) {
+        config.stores.url.features = JSON.parse( queryParams.addFeatures );
+    }
+
+    // if there is ?addTracks in the query params, add
+    // those track configurations to our initial
+    // configuration
+    if( queryParams.addTracks ) {
+        config.tracks = JSON.parse( queryParams.addTracks );
+    }
+
+    // if there is ?addBookmarks, add those to configuration
+    if( queryParams.addBookmarks ) {
+        config.bookmarks.features = JSON.parse( queryParams.addBookmarks );
+    }
+
+    // if there is ?addStores in the query params, add
+    // those store configurations to our initial
+    // configuration
+    if( queryParams.addStores ) {
+        config.stores = JSON.parse( queryParams.addStores );
+    }
+
+    // this handles dot notation versions of addTracks, addBookmarks, and addStores
+    // see config doc for details
+    QueryParamConfigMapper().handleQueryParams(config,queryParams);
+
+    // create a JBrowse global variable holding the JBrowse instance
+    window.JBrowse = new Browser( config );
+
+    require.on('error', function(error) {
+        let errString = error.info && error.info[0] && error.info[0].mid ? error.info.map(({mid})=>mid).join(', ') : error;
+        window.JBrowse.fatalError('Failed to load resource: '+errString);
+    });
+
+    window.JBrowse.afterMilestone('loadRefSeqs', function() { dojo.destroy(dojo.byId('LoadingScreen')); });
+});
+
diff --git a/src/jdataview-1.1-patch.X.js b/src/jdataview-1.1-patch.X.js
new file mode 100644
index 0000000000..f88bc2a797
--- /dev/null
+++ b/src/jdataview-1.1-patch.X.js
@@ -0,0 +1,516 @@
+//
+// jDataView by Vjeux - Jan 2010
+//
+// A unique way to read a binary file in the browser
+// http://github.com/vjeux/jDataView
+// http://blog.vjeux.com/ <vjeuxx@gmail.com>
+//
+
+(function (global) {
+
+var compatibility = {
+	ArrayBuffer: typeof ArrayBuffer !== 'undefined',
+	DataView: typeof DataView !== 'undefined' &&
+		('getFloat64' in DataView.prototype ||				// Chrome
+		 'getFloat64' in new DataView(new ArrayBuffer(1))), // Node
+	// NodeJS Buffer in v0.5.5 and newer
+	NodeBuffer: false//typeof Buffer !== 'undefined' && 'readInt16LE' in Buffer.prototype
+};
+
+var dataTypes = {
+	'Int8': 1,
+	'Int16': 2,
+	'Int32': 4,
+	'Uint8': 1,
+	'Uint16': 2,
+	'Uint32': 4,
+	'Float32': 4,
+	'Float64': 8
+};
+
+var nodeNaming = {
+	'Int8': 'Int8',
+	'Int16': 'Int16',
+	'Int32': 'Int32',
+	'Uint8': 'UInt8',
+	'Uint16': 'UInt16',
+	'Uint32': 'UInt32',
+	'Float32': 'Float',
+	'Float64': 'Double'
+};
+
+var jDataView = function (buffer, byteOffset, byteLength, littleEndian) {
+	if (!(this instanceof jDataView)) {
+		throw new Error("jDataView constructor may not be called as a function");
+	}
+
+	this.buffer = buffer;
+
+	// Handle Type Errors
+	if (!(compatibility.NodeBuffer && buffer instanceof Buffer) &&
+		!(compatibility.ArrayBuffer && buffer instanceof ArrayBuffer) &&
+		typeof buffer !== 'string') {
+		throw new TypeError('jDataView buffer has an incompatible type');
+    }
+
+	// Check parameters and existing functionnalities
+	this._isArrayBuffer = compatibility.ArrayBuffer && buffer instanceof ArrayBuffer;
+	this._isDataView = compatibility.DataView && this._isArrayBuffer;
+	this._isNodeBuffer = compatibility.NodeBuffer && buffer instanceof Buffer;
+
+	// Default Values
+	this._littleEndian = Boolean(littleEndian);
+
+	var bufferLength = this._isArrayBuffer ? buffer.byteLength : buffer.length;
+	if (byteOffset === undefined) {
+		byteOffset = 0;
+	}
+	this.byteOffset = byteOffset;
+
+	if (byteLength === undefined) {
+		byteLength = bufferLength - byteOffset;
+	}
+	this.byteLength = byteLength;
+
+	if (!this._isDataView) {
+		// Do additional checks to simulate DataView
+		if (typeof byteOffset !== 'number') {
+			throw new TypeError('jDataView byteOffset is not a number');
+		}
+		if (typeof byteLength !== 'number') {
+			throw new TypeError('jDataView byteLength is not a number');
+		}
+		if (byteOffset < 0) {
+			throw new Error('jDataView byteOffset is negative');
+		}
+		if (byteLength < 0) {
+			throw new Error('jDataView byteLength is negative');
+		}
+	}
+
+	// Instanciate
+	if (this._isDataView) {
+		this._view = new DataView(buffer, byteOffset, byteLength);
+		this._start = 0;
+	}
+	this._start = byteOffset;
+	if (byteOffset + byteLength > bufferLength) {
+		throw new Error("jDataView (byteOffset + byteLength) value is out of bounds");
+	}
+
+	this._offset = 0;
+
+	// Create uniform reading methods (wrappers) for the following data types
+
+	if (this._isDataView) { // DataView: we use the direct method
+		for (var type in dataTypes) {
+			if (!dataTypes.hasOwnProperty(type)) {
+				continue;
+			}
+			(function(type, view){
+				var size = dataTypes[type];
+				view['get' + type] = function (byteOffset, littleEndian) {
+					// Handle the lack of endianness
+					if (littleEndian === undefined) {
+						littleEndian = view._littleEndian;
+					}
+
+					// Handle the lack of byteOffset
+					if (byteOffset === undefined) {
+						byteOffset = view._offset;
+					}
+
+					// Move the internal offset forward
+					view._offset = byteOffset + size;
+
+					return view._view['get' + type](byteOffset, littleEndian);
+				}
+			})(type, this);
+		}
+	} else if (this._isNodeBuffer && compatibility.NodeBuffer) {
+		for (var type in dataTypes) {
+			if (!dataTypes.hasOwnProperty(type)) {
+				continue;
+			}
+
+			var name;
+			if (type === 'Int8' || type === 'Uint8') {
+				name = 'read' + nodeNaming[type];
+			} else if (littleEndian) {
+				name = 'read' + nodeNaming[type] + 'LE';
+			} else {
+				name = 'read' + nodeNaming[type] + 'BE';
+			}
+
+			(function(type, view, name){
+				var size = dataTypes[type];
+				view['get' + type] = function (byteOffset, littleEndian) {
+					// Handle the lack of endianness
+					if (littleEndian === undefined) {
+						littleEndian = view._littleEndian;
+					}
+
+					// Handle the lack of byteOffset
+					if (byteOffset === undefined) {
+						byteOffset = view._offset;
+					}
+
+					// Move the internal offset forward
+					view._offset = byteOffset + size;
+
+					return view.buffer[name](view._start + byteOffset);
+				}
+			})(type, this, name);
+		}
+	} else {
+		for (var type in dataTypes) {
+			if (!dataTypes.hasOwnProperty(type)) {
+				continue;
+			}
+			(function(type, view){
+				var size = dataTypes[type];
+				view['get' + type] = function (byteOffset, littleEndian) {
+					// Handle the lack of endianness
+					if (littleEndian === undefined) {
+						littleEndian = view._littleEndian;
+					}
+
+					// Handle the lack of byteOffset
+					if (byteOffset === undefined) {
+						byteOffset = view._offset;
+					}
+
+					// Move the internal offset forward
+					view._offset = byteOffset + size;
+
+					if (view._isArrayBuffer && (view._start + byteOffset) % size === 0 && (size === 1 || littleEndian)) {
+						// ArrayBuffer: we use a typed array of size 1 if the alignment is good
+						// ArrayBuffer does not support endianess flag (for size > 1)
+						return new global[type + 'Array'](view.buffer, view._start + byteOffset, 1)[0];
+					} else {
+						// Error checking:
+						if (typeof byteOffset !== 'number') {
+							throw new TypeError('jDataView byteOffset is not a number');
+						}
+						if (byteOffset + size > view.byteLength) {
+							throw new Error('jDataView (byteOffset + size) value is out of bounds');
+						}
+
+						return view['_get' + type](view._start + byteOffset, littleEndian);
+					}
+				}
+			})(type, this);
+		}
+	}
+};
+
+if (compatibility.NodeBuffer) {
+	jDataView.createBuffer = function () {
+		return new Buffer(arguments);
+	}
+} else if (compatibility.ArrayBuffer) {
+	jDataView.createBuffer = function () {
+		return new Uint8Array(arguments).buffer;
+	}
+} else {
+	jDataView.createBuffer = function () {
+		return String.fromCharCode.apply(null, arguments);
+	}
+}
+
+jDataView.prototype = {
+	compatibility: compatibility,
+
+	// Helpers
+
+	_getBytes: function (length, byteOffset, littleEndian) {
+		var result;
+
+		// Handle the lack of endianness
+		if (littleEndian === undefined) {
+			littleEndian = this._littleEndian;
+		}
+
+		// Handle the lack of byteOffset
+		if (byteOffset === undefined) {
+			byteOffset = this._offset;
+		}
+
+		// Error Checking
+		if (typeof byteOffset !== 'number') {
+			throw new TypeError('jDataView byteOffset is not a number');
+		}
+		if (length < 0 || byteOffset + length > this.byteLength) {
+			throw new Error('jDataView length or (byteOffset+length) value is out of bounds');
+		}
+
+		byteOffset += this._start;
+
+		if (this._isArrayBuffer) {
+			result = new Uint8Array(this.buffer, byteOffset, length);
+		}
+		else {
+			result = this.buffer.slice(byteOffset, byteOffset + length);
+
+			if (!this._isNodeBuffer) {
+				result = Array.prototype.map.call(result, function (char) {
+					return char.charCodeAt(0) & 0xff;
+				});
+			}
+		}
+
+		if (littleEndian && length > 1) {
+			if (!(result instanceof Array)) {
+				result = Array.prototype.slice.call(result);
+			}
+
+			result.reverse();
+		}
+
+		this._offset = byteOffset - this._start + length;
+
+		return result;
+	},
+
+	// wrapper for external calls (do not return inner buffer directly to prevent it's modifying)
+	getBytes: function (length, byteOffset, littleEndian) {
+		var result = this._getBytes.apply(this, arguments);
+
+		if (!(result instanceof Array)) {
+			result = Array.prototype.slice.call(result);
+		}
+
+		return result;
+	},
+
+	getString: function (length, byteOffset) {
+		var value;
+
+		if (this._isNodeBuffer) {
+			// Handle the lack of byteOffset
+			if (byteOffset === undefined) {
+				byteOffset = this._offset;
+			}
+
+			// Error Checking
+			if (typeof byteOffset !== 'number') {
+				throw new TypeError('jDataView byteOffset is not a number');
+			}
+			if (length < 0 || byteOffset + length > this.byteLength) {
+				throw new Error('jDataView length or (byteOffset+length) value is out of bounds');
+			}
+
+			value = this.buffer.toString('ascii', this._start + byteOffset, this._start + byteOffset + length);
+			this._offset = byteOffset + length;
+		}
+		else {
+			value = String.fromCharCode.apply(null, this._getBytes(length, byteOffset, false));
+		}
+
+		return value;
+	},
+
+	getChar: function (byteOffset) {
+		return this.getString(1, byteOffset);
+	},
+
+	tell: function () {
+		return this._offset;
+	},
+
+	seek: function (byteOffset) {
+		if (typeof byteOffset !== 'number') {
+			throw new TypeError('jDataView byteOffset is not a number');
+		}
+		if (byteOffset < 0 || byteOffset > this.byteLength) {
+			throw new Error('jDataView byteOffset value is out of bounds');
+		}
+
+		return this._offset = byteOffset;
+	},
+
+	// Compatibility functions on a String Buffer
+
+	_getFloat64: function (byteOffset, littleEndian) {
+		var b = this._getBytes(8, byteOffset, littleEndian),
+
+			sign = 1 - (2 * (b[0] >> 7)),
+			exponent = ((((b[0] << 1) & 0xff) << 3) | (b[1] >> 4)) - (Math.pow(2, 10) - 1),
+
+		// Binary operators such as | and << operate on 32 bit values, using + and Math.pow(2) instead
+			mantissa = ((b[1] & 0x0f) * Math.pow(2, 48)) + (b[2] * Math.pow(2, 40)) + (b[3] * Math.pow(2, 32)) +
+						(b[4] * Math.pow(2, 24)) + (b[5] * Math.pow(2, 16)) + (b[6] * Math.pow(2, 8)) + b[7];
+
+		if (exponent === 1024) {
+			if (mantissa !== 0) {
+				return NaN;
+			} else {
+				return sign * Infinity;
+			}
+		}
+
+		if (exponent === -1023) { // Denormalized
+			return sign * mantissa * Math.pow(2, -1022 - 52);
+		}
+
+		return sign * (1 + mantissa * Math.pow(2, -52)) * Math.pow(2, exponent);
+	},
+
+	_getFloat32: function (byteOffset, littleEndian) {
+		var b = this._getBytes(4, byteOffset, littleEndian),
+
+			sign = 1 - (2 * (b[0] >> 7)),
+			exponent = (((b[0] << 1) & 0xff) | (b[1] >> 7)) - 127,
+			mantissa = ((b[1] & 0x7f) << 16) | (b[2] << 8) | b[3];
+
+		if (exponent === 128) {
+			if (mantissa !== 0) {
+				return NaN;
+			} else {
+				return sign * Infinity;
+			}
+		}
+
+		if (exponent === -127) { // Denormalized
+			return sign * mantissa * Math.pow(2, -126 - 23);
+		}
+
+		return sign * (1 + mantissa * Math.pow(2, -23)) * Math.pow(2, exponent);
+	},
+
+	_getInt32: function (byteOffset, littleEndian) {
+		var b = this._getUint32(byteOffset, littleEndian);
+		return b > Math.pow(2, 31) - 1 ? b - Math.pow(2, 32) : b;
+	},
+
+	_getUint32: function (byteOffset, littleEndian) {
+		var b = this._getBytes(4, byteOffset, littleEndian);
+		return (b[3] * Math.pow(2, 24)) + (b[2] << 16) + (b[1] << 8) + b[0];
+	},
+
+	_getInt16: function (byteOffset, littleEndian) {
+		var b = this._getUint16(byteOffset, littleEndian);
+		return b > Math.pow(2, 15) - 1 ? b - Math.pow(2, 16) : b;
+	},
+
+	_getUint16: function (byteOffset, littleEndian) {
+		var b = this._getBytes(2, byteOffset, littleEndian);
+		return (b[1] << 8) + b[0];
+	},
+
+	_getInt8: function (byteOffset) {
+		var b = this._getUint8(byteOffset);
+		return b > Math.pow(2, 7) - 1 ? b - Math.pow(2, 8) : b;
+	},
+
+	_getUint8: function (byteOffset) {
+		return this._getBytes(1, byteOffset)[0];
+	}
+};
+
+if (typeof jQuery !== 'undefined' && jQuery.fn.jquery >= "1.6.2") {
+	var convertResponseBodyToText = function (byteArray) {
+		// http://jsperf.com/vbscript-binary-download/6
+		var scrambledStr;
+		try {
+			scrambledStr = IEBinaryToArray_ByteStr(byteArray);
+		} catch (e) {
+			// http://stackoverflow.com/questions/1919972/how-do-i-access-xhr-responsebody-for-binary-data-from-javascript-in-ie
+			// http://miskun.com/javascript/internet-explorer-and-binary-files-data-access/
+			var IEBinaryToArray_ByteStr_Script =
+				"Function IEBinaryToArray_ByteStr(Binary)\r\n"+
+				"	IEBinaryToArray_ByteStr = CStr(Binary)\r\n"+
+				"End Function\r\n"+
+				"Function IEBinaryToArray_ByteStr_Last(Binary)\r\n"+
+				"	Dim lastIndex\r\n"+
+				"	lastIndex = LenB(Binary)\r\n"+
+				"	if lastIndex mod 2 Then\r\n"+
+				"		IEBinaryToArray_ByteStr_Last = AscB( MidB( Binary, lastIndex, 1 ) )\r\n"+
+				"	Else\r\n"+
+				"		IEBinaryToArray_ByteStr_Last = -1\r\n"+
+				"	End If\r\n"+
+				"End Function\r\n";
+
+			// http://msdn.microsoft.com/en-us/library/ms536420(v=vs.85).aspx
+			// proprietary IE function
+			window.execScript(IEBinaryToArray_ByteStr_Script, 'vbscript');
+
+			scrambledStr = IEBinaryToArray_ByteStr(byteArray);
+		}
+
+		var lastChr = IEBinaryToArray_ByteStr_Last(byteArray),
+		result = "",
+		i = 0,
+		l = scrambledStr.length % 8,
+		thischar;
+		while (i < l) {
+			thischar = scrambledStr.charCodeAt(i++);
+			result += String.fromCharCode(thischar & 0xff, thischar >> 8);
+		}
+		l = scrambledStr.length
+		while (i < l) {
+			result += String.fromCharCode(
+				(thischar = scrambledStr.charCodeAt(i++), thischar & 0xff), thischar >> 8,
+				(thischar = scrambledStr.charCodeAt(i++), thischar & 0xff), thischar >> 8,
+				(thischar = scrambledStr.charCodeAt(i++), thischar & 0xff), thischar >> 8,
+				(thischar = scrambledStr.charCodeAt(i++), thischar & 0xff), thischar >> 8,
+				(thischar = scrambledStr.charCodeAt(i++), thischar & 0xff), thischar >> 8,
+				(thischar = scrambledStr.charCodeAt(i++), thischar & 0xff), thischar >> 8,
+				(thischar = scrambledStr.charCodeAt(i++), thischar & 0xff), thischar >> 8,
+				(thischar = scrambledStr.charCodeAt(i++), thischar & 0xff), thischar >> 8);
+		}
+		if (lastChr > -1) {
+			result += String.fromCharCode(lastChr);
+		}
+		return result;
+	};
+
+	jQuery.ajaxSetup({
+		converters: {
+			'* dataview': function(data) {
+				return new jDataView(data);
+			}
+		},
+		accepts: {
+			dataview: "text/plain; charset=x-user-defined"
+		},
+		responseHandler: {
+			dataview: function (responses, options, xhr) {
+				// Array Buffer Firefox
+				if ('mozResponseArrayBuffer' in xhr) {
+					responses.text = xhr.mozResponseArrayBuffer;
+				}
+				// Array Buffer Chrome
+				else if ('responseType' in xhr && xhr.responseType === 'arraybuffer' && xhr.response) {
+					responses.text = xhr.response;
+				}
+				// Internet Explorer (Byte array accessible through VBScript -- convert to text)
+				else if ('responseBody' in xhr) {
+					responses.text = convertResponseBodyToText(xhr.responseBody);
+				}
+				// Older Browsers
+				else {
+					responses.text = xhr.responseText;
+				}
+			}
+		}
+	});
+
+	jQuery.ajaxPrefilter('dataview', function(options, originalOptions, jqXHR) {
+		// trying to set the responseType on IE 6 causes an error
+		if (jQuery.support.ajaxResponseType) {
+			if (!options.hasOwnProperty('xhrFields')) {
+				options.xhrFields = {};
+			}
+			options.xhrFields.responseType = 'arraybuffer';
+		}
+		options.mimeType = 'text/plain; charset=x-user-defined';
+	});
+}
+
+global.jDataView = (global.module || {}).exports = jDataView;
+if (typeof module !== 'undefined') {
+	module.exports = jDataView;
+}
+
+})(this);
diff --git a/src/lazyload.js b/src/lazyload.js
new file mode 100644
index 0000000000..dd15e9e6a8
--- /dev/null
+++ b/src/lazyload.js
@@ -0,0 +1,396 @@
+/*jslint browser: true, eqeqeq: true, bitwise: true, newcap: true, immed: true, regexp: false */
+
+/**
+LazyLoad makes it easy and painless to lazily load one or more external
+JavaScript or CSS files on demand either during or after the rendering of a web
+page.
+
+Supported browsers include Firefox 2+, IE6+, Safari 3+ (including Mobile
+Safari), Google Chrome, and Opera 9+. Other browsers may or may not work and
+are not officially supported.
+
+Visit https://github.com/rgrove/lazyload/ for more info.
+
+Copyright (c) 2011 Ryan Grove <ryan@wonko.com>
+All rights reserved.
+
+Permission is hereby granted, free of charge, to any person obtaining a copy of
+this software and associated documentation files (the 'Software'), to deal in
+the Software without restriction, including without limitation the rights to
+use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of
+the Software, and to permit persons to whom the Software is furnished to do so,
+subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED 'AS IS', WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS
+FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR
+COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER
+IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
+CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+
+@module lazyload
+@class LazyLoad
+@static
+@version 2.0.3 (git)
+*/
+
+define([], function() { var
+
+LazyLoad = (function (doc) {
+  // -- Private Variables ------------------------------------------------------
+
+  // User agent and feature test information.
+  var env,
+
+  // Reference to the <head> element (populated lazily).
+  head,
+
+  // Requests currently in progress, if any.
+  pending = {},
+
+  // Number of times we've polled to check whether a pending stylesheet has
+  // finished loading. If this gets too high, we're probably stalled.
+  pollCount = 0,
+
+  // Queued requests.
+  queue = {css: [], js: []},
+
+  // Reference to the browser's list of stylesheets.
+  styleSheets = doc.styleSheets;
+
+  // -- Private Methods --------------------------------------------------------
+
+  /**
+  Creates and returns an HTML element with the specified name and attributes.
+
+  @method createNode
+  @param {String} name element name
+  @param {Object} attrs name/value mapping of element attributes
+  @return {HTMLElement}
+  @private
+  */
+  function createNode(name, attrs) {
+    var node = doc.createElement(name), attr;
+
+    for (attr in attrs) {
+      if (attrs.hasOwnProperty(attr)) {
+        node.setAttribute(attr, attrs[attr]);
+      }
+    }
+
+    return node;
+  }
+
+  /**
+  Called when the current pending resource of the specified type has finished
+  loading. Executes the associated callback (if any) and loads the next
+  resource in the queue.
+
+  @method finish
+  @param {String} type resource type ('css' or 'js')
+  @private
+  */
+  function finish(type) {
+    var p = pending[type],
+        callback,
+        urls;
+
+    if (p) {
+      callback = p.callback;
+      urls     = p.urls;
+
+      urls.shift();
+      pollCount = 0;
+
+      // If this is the last of the pending URLs, execute the callback and
+      // start the next request in the queue (if any).
+      if (!urls.length) {
+        callback && callback.call(p.context, p.obj);
+        pending[type] = null;
+        queue[type].length && load(type);
+      }
+    }
+  }
+
+  /**
+  Populates the <code>env</code> variable with user agent and feature test
+  information.
+
+  @method getEnv
+  @private
+  */
+  function getEnv() {
+    var ua = navigator.userAgent;
+
+    env = {
+      // True if this browser supports disabling async mode on dynamically
+      // created script nodes. See
+      // http://wiki.whatwg.org/wiki/Dynamic_Script_Execution_Order
+      async: doc.createElement('script').async === true
+    };
+
+    (env.webkit = /AppleWebKit\//.test(ua))
+      || (env.ie = /MSIE/.test(ua))
+      || (env.opera = /Opera/.test(ua))
+      || (env.gecko = /Gecko\//.test(ua))
+      || (env.unknown = true);
+  }
+
+  /**
+  Loads the specified resources, or the next resource of the specified type
+  in the queue if no resources are specified. If a resource of the specified
+  type is already being loaded, the new request will be queued until the
+  first request has been finished.
+
+  When an array of resource URLs is specified, those URLs will be loaded in
+  parallel if it is possible to do so while preserving execution order. All
+  browsers support parallel loading of CSS, but only Firefox and Opera
+  support parallel loading of scripts. In other browsers, scripts will be
+  queued and loaded one at a time to ensure correct execution order.
+
+  @method load
+  @param {String} type resource type ('css' or 'js')
+  @param {String|Array} urls (optional) URL or array of URLs to load
+  @param {Function} callback (optional) callback function to execute when the
+    resource is loaded
+  @param {Object} obj (optional) object to pass to the callback function
+  @param {Object} context (optional) if provided, the callback function will
+    be executed in this object's context
+  @private
+  */
+  function load(type, urls, callback, obj, context) {
+    var _finish = function () { finish(type); },
+        isCSS   = type === 'css',
+        nodes   = [],
+        i, len, node, p, pendingUrls, url;
+
+    env || getEnv();
+
+    if (urls) {
+      // If urls is a string, wrap it in an array. Otherwise assume it's an
+      // array and create a copy of it so modifications won't be made to the
+      // original.
+      urls = typeof urls === 'string' ? [urls] : urls.concat();
+
+      // Create a request object for each URL. If multiple URLs are specified,
+      // the callback will only be executed after all URLs have been loaded.
+      //
+      // Sadly, Firefox and Opera are the only browsers capable of loading
+      // scripts in parallel while preserving execution order. In all other
+      // browsers, scripts must be loaded sequentially.
+      //
+      // All browsers respect CSS specificity based on the order of the link
+      // elements in the DOM, regardless of the order in which the stylesheets
+      // are actually downloaded.
+      if (isCSS || env.async || env.gecko || env.opera) {
+        // Load in parallel.
+        queue[type].push({
+          urls    : urls,
+          callback: callback,
+          obj     : obj,
+          context : context
+        });
+      } else {
+        // Load sequentially.
+        for (i = 0, len = urls.length; i < len; ++i) {
+          queue[type].push({
+            urls    : [urls[i]],
+            callback: i === len - 1 ? callback : null, // callback is only added to the last URL
+            obj     : obj,
+            context : context
+          });
+        }
+      }
+    }
+
+    // If a previous load request of this type is currently in progress, we'll
+    // wait our turn. Otherwise, grab the next item in the queue.
+    if (pending[type] || !(p = pending[type] = queue[type].shift())) {
+      return;
+    }
+
+    head || (head = doc.head || doc.getElementsByTagName('head')[0]);
+    pendingUrls = p.urls;
+
+    for (i = 0, len = pendingUrls.length; i < len; ++i) {
+      url = pendingUrls[i];
+
+      if (isCSS) {
+          node = env.gecko ? createNode('style') : createNode('link', {
+            href: url,
+            rel : 'stylesheet'
+          });
+      } else {
+        node = createNode('script', {src: url});
+        node.async = false;
+      }
+
+      node.className = 'lazyload';
+      node.setAttribute('charset', 'utf-8');
+
+      if (env.ie && !isCSS) {
+        node.onreadystatechange = function () {
+          if (/loaded|complete/.test(node.readyState)) {
+            node.onreadystatechange = null;
+            _finish();
+          }
+        };
+      } else if (isCSS && (env.gecko || env.webkit)) {
+        // Gecko and WebKit don't support the onload event on link nodes.
+        if (env.webkit) {
+          // In WebKit, we can poll for changes to document.styleSheets to
+          // figure out when stylesheets have loaded.
+          p.urls[i] = node.href; // resolve relative URLs (or polling won't work)
+          pollWebKit();
+        } else {
+          // In Gecko, we can import the requested URL into a <style> node and
+          // poll for the existence of node.sheet.cssRules. Props to Zach
+          // Leatherman for calling my attention to this technique.
+          node.innerHTML = '@import "' + url + '";';
+          pollGecko(node);
+        }
+      } else {
+        node.onload = node.onerror = _finish;
+      }
+
+      nodes.push(node);
+    }
+
+    for (i = 0, len = nodes.length; i < len; ++i) {
+      head.appendChild(nodes[i]);
+    }
+  }
+
+  /**
+  Begins polling to determine when the specified stylesheet has finished loading
+  in Gecko. Polling stops when all pending stylesheets have loaded or after 10
+  seconds (to prevent stalls).
+
+  Thanks to Zach Leatherman for calling my attention to the @import-based
+  cross-domain technique used here, and to Oleg Slobodskoi for an earlier
+  same-domain implementation. See Zach's blog for more details:
+  http://www.zachleat.com/web/2010/07/29/load-css-dynamically/
+
+  @method pollGecko
+  @param {HTMLElement} node Style node to poll.
+  @private
+  */
+  function pollGecko(node) {
+    var hasRules;
+
+    try {
+      // We don't really need to store this value or ever refer to it again, but
+      // if we don't store it, Closure Compiler assumes the code is useless and
+      // removes it.
+      hasRules = !!node.sheet.cssRules;
+    } catch (ex) {
+      // An exception means the stylesheet is still loading.
+      pollCount += 1;
+
+      if (pollCount < 200) {
+        setTimeout(function () { pollGecko(node); }, 50);
+      } else {
+        // We've been polling for 10 seconds and nothing's happened. Stop
+        // polling and finish the pending requests to avoid blocking further
+        // requests.
+        hasRules && finish('css');
+      }
+
+      return;
+    }
+
+    // If we get here, the stylesheet has loaded.
+    finish('css');
+  }
+
+  /**
+  Begins polling to determine when pending stylesheets have finished loading
+  in WebKit. Polling stops when all pending stylesheets have loaded or after 10
+  seconds (to prevent stalls).
+
+  @method pollWebKit
+  @private
+  */
+  function pollWebKit() {
+    var css = pending.css, i;
+
+    if (css) {
+      i = styleSheets.length;
+
+      // Look for a stylesheet matching the pending URL.
+      while (--i >= 0) {
+        if (styleSheets[i].href === css.urls[0]) {
+          finish('css');
+          break;
+        }
+      }
+
+      pollCount += 1;
+
+      if (css) {
+        if (pollCount < 200) {
+          setTimeout(pollWebKit, 50);
+        } else {
+          // We've been polling for 10 seconds and nothing's happened, which may
+          // indicate that the stylesheet has been removed from the document
+          // before it had a chance to load. Stop polling and finish the pending
+          // request to prevent blocking further requests.
+          finish('css');
+        }
+      }
+    }
+  }
+
+  return {
+
+    /**
+    Requests the specified CSS URL or URLs and executes the specified
+    callback (if any) when they have finished loading. If an array of URLs is
+    specified, the stylesheets will be loaded in parallel and the callback
+    will be executed after all stylesheets have finished loading.
+
+    @method css
+    @param {String|Array} urls CSS URL or array of CSS URLs to load
+    @param {Function} callback (optional) callback function to execute when
+      the specified stylesheets are loaded
+    @param {Object} obj (optional) object to pass to the callback function
+    @param {Object} context (optional) if provided, the callback function
+      will be executed in this object's context
+    @static
+    */
+    css: function (urls, callback, obj, context) {
+      load('css', urls, callback, obj, context);
+    },
+
+    /**
+    Requests the specified JavaScript URL or URLs and executes the specified
+    callback (if any) when they have finished loading. If an array of URLs is
+    specified and the browser supports it, the scripts will be loaded in
+    parallel and the callback will be executed after all scripts have
+    finished loading.
+
+    Currently, only Firefox and Opera support parallel loading of scripts while
+    preserving execution order. In other browsers, scripts will be
+    queued and loaded one at a time to ensure correct execution order.
+
+    @method js
+    @param {String|Array} urls JS URL or array of JS URLs to load
+    @param {Function} callback (optional) callback function to execute when
+      the specified scripts are loaded
+    @param {Object} obj (optional) object to pass to the callback function
+    @param {Object} context (optional) if provided, the callback function
+      will be executed in this object's context
+    @static
+    */
+    js: function (urls, callback, obj, context) {
+      load('js', urls, callback, obj, context);
+    }
+
+  };
+})(this.document);
+
+
+return LazyLoad; });
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/names/root.json b/tests/data/volvox_formatted_1_2_1/names/root.json
deleted file mode 100644
index 36a6fa6a5a..0000000000
--- a/tests/data/volvox_formatted_1_2_1/names/root.json
+++ /dev/null
@@ -1 +0,0 @@
-[["ExampleFeatures","NameTest","Motifs","Alignments","Genes","ReadingFrame","CDS","Transcript","Clones","EST"],null,["a",null,["gt",null,["221.",null,["3",[[9,"agt221.3","ctgA",7499,8000,"87"]]],["5",[[9,"agt221.5","ctgA",1049,7300,"86"]]]],["767.",null,["3",[[9,"agt767.3","ctgA",7999,9000,"89"]]],["5",[[9,"agt767.5","ctgA",1149,7200,"88"]]]],["830.",null,["3",[[9,"agt830.3","ctgA",5409,7503,"85"]]],["5",[[9,"agt830.5","ctgA",1049,3202,"84"]]]]],["pple",null,["1",[[6,"Apple1","ctgA",9999,11500,"52"]]],["2",[[6,"Apple2","ctgA",12999,17200,"53"]]],["3",[[5,"Apple3","ctgA",17399,23000,"54"],[6,"Apple3","ctgA",17399,23000,"54"],[7,"Apple3","ctgA",17399,23000,"54"]]]]],["b101.2",[[8,"b101.2","ctgA",999,20000,"81"]]],["eden",[[4,"EDEN","ctgA",1049,9000,"60"]],[".",null,["1",[[5,"EDEN.1","ctgA",1049,9000,"61"]]],["2",[[5,"EDEN.2","ctgA",1049,9000,"68"]]],["3",[[5,"EDEN.3","ctgA",1299,9000,"74"]]]]],["f",null,["0",null,["1",[[0,"f01","ctgA",44704,47713,"14"]]],["2",[[0,"f02","ctgA",24561,28338,"10"]]],["3",[[0,"f03","ctgA",36648,40440,"12"]]],["4",[[0,"f04","ctgA",37241,38653,"13"]]],["5",[[0,"f05","ctgA",4714,5968,"4"]]],["6",[[0,"f06","ctgA",3013,6130,"3"]]],["7",[[0,"f07","ctgA",1658,1984,"2"]]],["8",[[0,"f08","ctgA",13279,16394,"5"]]],["9",[[0,"f09","ctgA",36033,38167,"11"]]]],["1",null,["0",[[0,"f10","ctgA",15328,15533,"6"]]],["1",[[0,"f11","ctgA",46989,48410,"15"]]],["2",[[0,"f12","ctgA",49757,50000,"16"]]],["3",[[0,"f13","ctgA",19156,22915,"7"]]],["4",[[0,"f14","ctgA",23071,23185,"9"]]],["5",[[0,"f15","ctgA",22131,24633,"8"]]]]],["gene:hg",null,["a",[[1,"Gene:hga","ctgA",1099,2000,"18"]]],["b",[[1,"Gene:hgb","ctgA",1599,3000,"20"]]]],["hg",null,["a",[[0,"Remark:hga","ctgA",999,2000,"17"],[1,"Gene:hga","ctgA",1099,2000,"18"],[1,"Protein:HGA","ctgA",1199,1900,"19"]]],["b",[[1,"Protein:HGB","ctgA",1799,2900,"21"],[1,"Gene:hgb","ctgA",1599,3000,"20"]]]],["m",null,["0",null,["1",[[2,"m01","ctgA",48252,48366,"36"]]],["2",[[2,"m02","ctgA",28331,30033,"30"]]],["3",[[2,"m03","ctgA",15395,16159,"25"]]],["4",[[2,"m04","ctgA",33324,35791,"33"]]],["5",[[2,"m05","ctgA",13800,14007,"23"]]],["6",[[2,"m06","ctgA",30577,31748,"32"]]],["7",[[2,"m07","ctgA",18047,18552,"28"]]],["8",[[2,"m08","ctgA",17022,17675,"26"]]],["9",[[2,"m09","ctgA",46011,48851,"35"]]]],["1",null,["0",[[2,"m10","ctgA",28341,28447,"31"]]],["1",[[2,"m11","ctgA",11910,15561,"22"]]],["2",[[2,"m12","ctgA",21747,25612,"29"]]],["3",[[2,"m13","ctgA",17666,17690,"27"]]],["4",[[2,"m14","ctgA",14730,17239,"24"]]],["5",[[2,"m15","ctgA",37496,40559,"34"]]]]],["protein:hg",null,["a",[[1,"Protein:HGA","ctgA",1199,1900,"19"]]],["b",[[1,"Protein:HGB","ctgA",1799,2900,"21"]]]],["remark:hga",[[0,"Remark:hga","ctgA",999,2000,"17"]]],["seg",null,["0",null,["1",[[3,"seg01","ctgA",32328,32359,"37"]]],["2",[[3,"seg02","ctgA",26121,34466,"38"]]],["3",[[3,"seg03","ctgA",6884,8999,"39"]]],["4",[[3,"seg04","ctgA",5232,9825,"40"]]],["5",[[3,"seg05","ctgA",26502,35904,"41"]]],["6",[[3,"seg06","ctgA",19248,23427,"42"]]],["7",[[3,"seg07","ctgA",44190,50000,"43"]]],["8",[[3,"seg08","ctgA",18508,25367,"44"]]],["9",[[3,"seg09","ctgA",36615,37227,"45"]]]],["1",null,["0",[[3,"seg10","ctgA",29770,32937,"46"]]],["1",[[3,"seg11","ctgA",24227,30738,"47"]]],["2",[[3,"seg12","ctgA",12530,15870,"48"]]],["3",[[3,"seg13","ctgA",49405,50000,"49"]]],["4",[[3,"seg14","ctgA",41136,47829,"50"]]],["5",[[3,"seg15","ctgA",39264,48453,"51"]]]]]]
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/refSeqs.js b/tests/data/volvox_formatted_1_2_1/refSeqs.js
deleted file mode 100644
index fbb225dc35..0000000000
--- a/tests/data/volvox_formatted_1_2_1/refSeqs.js
+++ /dev/null
@@ -1,11 +0,0 @@
-refSeqs = 
-[
-   {
-      "length" : 50001,
-      "name" : "ctgA",
-      "seqDir" : "seq/ctgA",
-      "seqChunkSize" : 20000,
-      "end" : 50001,
-      "start" : 0
-   }
-]
diff --git a/tests/data/volvox_formatted_1_2_1/seq/ctgA/0.txt b/tests/data/volvox_formatted_1_2_1/seq/ctgA/0.txt
deleted file mode 100644
index f23fb1ae81..0000000000
--- a/tests/data/volvox_formatted_1_2_1/seq/ctgA/0.txt
+++ /dev/null
@@ -1 +0,0 @@
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c
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/seq/ctgA/1.txt b/tests/data/volvox_formatted_1_2_1/seq/ctgA/1.txt
deleted file mode 100644
index 5a5378a120..0000000000
--- a/tests/data/volvox_formatted_1_2_1/seq/ctgA/1.txt
+++ /dev/null
@@ -1 +0,0 @@
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a
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/seq/ctgA/2.txt b/tests/data/volvox_formatted_1_2_1/seq/ctgA/2.txt
deleted file mode 100644
index cf63d97e83..0000000000
--- a/tests/data/volvox_formatted_1_2_1/seq/ctgA/2.txt
+++ /dev/null
@@ -1 +0,0 @@
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ac
\ No newline at end of file
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diff --git a/tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/50000/0.png b/tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/50000/0.png
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diff --git a/tests/data/volvox_formatted_1_2_1/trackInfo.js b/tests/data/volvox_formatted_1_2_1/trackInfo.js
deleted file mode 100644
index 5ee0f3b062..0000000000
--- a/tests/data/volvox_formatted_1_2_1/trackInfo.js
+++ /dev/null
@@ -1,84 +0,0 @@
-trackInfo = 
-[
-   {
-      "args" : {
-         "chunkSize" : 20000
-      },
-      "url" : "seq/{refseq}/",
-      "type" : "SequenceTrack",
-      "label" : "DNA",
-      "key" : "Reference sequence"
-   },
-   {
-      "url" : "tracks/{refseq}/ExampleFeatures/trackData.json",
-      "label" : "ExampleFeatures",
-      "type" : "FeatureTrack",
-      "key" : "HTMLFeatures - Example Features"
-   },
-   {
-      "url" : "tracks/{refseq}/NameTest/trackData.json",
-      "type" : "FeatureTrack",
-      "label" : "NameTest",
-      "key" : "Name test track"
-   },
-   {
-      "url" : "tracks/{refseq}/Motifs/trackData.json",
-      "label" : "Motifs",
-      "type" : "FeatureTrack",
-      "key" : "Example motifs"
-   },
-   {
-      "url" : "tracks/{refseq}/Alignments/trackData.json",
-      "type" : "FeatureTrack",
-      "label" : "malformed_alignments",
-      "key" : "HTMLFeatures - Features with menus"
-   },
-   {
-      "url" : "tracks/{refseq}/Genes/trackData.json",
-      "label" : "Genes",
-      "type" : "FeatureTrack",
-      "key" : "Protein-coding genes"
-   },
-   {
-      "url" : "tracks/{refseq}/ReadingFrame/trackData.json",
-      "type" : "FeatureTrack",
-      "label" : "ReadingFrame",
-      "key" : "HTMLFeatures - mRNAs"
-   },
-   {
-      "url" : "tracks/{refseq}/CDS/trackData.json",
-      "label" : "CDS",
-      "type" : "FeatureTrack",
-      "key" : "Predicted genes"
-   },
-   {
-      "url" : "tracks/{refseq}/Transcript/trackData.json",
-      "type" : "FeatureTrack",
-      "label" : "Transcript",
-      "key" : "Exonerate predictions"
-   },
-   {
-      "url" : "tracks/{refseq}/Clones/trackData.json",
-      "label" : "Clones",
-      "type" : "FeatureTrack",
-      "key" : "Fingerprinted BACs"
-   },
-   {
-      "url" : "tracks/{refseq}/EST/trackData.json",
-      "type" : "FeatureTrack",
-      "label" : "EST",
-      "key" : "ESTs"
-   },
-   {
-      "url" : "tracks/{refseq}/bam_simulated/trackData.json",
-      "label" : "bam_simulated",
-      "type" : "FeatureTrack",
-      "key" : "Simulated next-gen reads"
-   },
-   {
-      "url" : "tracks/{refseq}/volvox_microarray.wig.json",
-      "type" : "ImageTrack",
-      "label" : "volvox_microarray.wig",
-      "key" : "Image - volvox_microarray.wig"
-   }
-]
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Alignments/hist-10000-0.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Alignments/hist-10000-0.json
deleted file mode 100644
index 10cb5fbaee..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Alignments/hist-10000-0.json
+++ /dev/null
@@ -1 +0,0 @@
-[2,3,6,7,4,2]
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Alignments/names.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Alignments/names.json
deleted file mode 100644
index 7bb004d736..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Alignments/names.json
+++ /dev/null
@@ -1 +0,0 @@
-[[["seg08"],"Alignments","seg08","ctgA",18508,25367,"44"],[["seg12"],"Alignments","seg12","ctgA",12530,15870,"48"],[["seg14"],"Alignments","seg14","ctgA",41136,47829,"50"],[["seg03"],"Alignments","seg03","ctgA",6884,8999,"39"],[["seg05"],"Alignments","seg05","ctgA",26502,35904,"41"],[["seg09"],"Alignments","seg09","ctgA",36615,37227,"45"],[["seg04"],"Alignments","seg04","ctgA",5232,9825,"40"],[["seg13"],"Alignments","seg13","ctgA",49405,50000,"49"],[["seg06"],"Alignments","seg06","ctgA",19248,23427,"42"],[["seg10"],"Alignments","seg10","ctgA",29770,32937,"46"],[["seg15"],"Alignments","seg15","ctgA",39264,48453,"51"],[["seg11"],"Alignments","seg11","ctgA",24227,30738,"47"],[["seg02"],"Alignments","seg02","ctgA",26121,34466,"38"],[["seg01"],"Alignments","seg01","ctgA",32328,32359,"37"],[["seg07"],"Alignments","seg07","ctgA",44190,50000,"43"]]
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Alignments/trackData.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Alignments/trackData.json
deleted file mode 100644
index 598d8e48ee..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Alignments/trackData.json
+++ /dev/null
@@ -1 +0,0 @@
-{"histogramMeta":[{"basesPerBin":"10000","arrayParams":{"length":6,"chunkSize":10000,"urlTemplate":"hist-10000-{chunk}.json"}}],"subfeatureClasses":null,"headers":["start","end","strand","id","name"],"lazyIndex":2,"featureCount":15,"histStats":[{"bases":10000,"max":7,"mean":4}],"featureNCList":[[5232,9825,-1,"40","seg04",[[6884,8999,-1,"39","seg03"]]],[12530,15870,1,"48","seg12"],[18508,25367,1,"44","seg08",[[19248,23427,1,"42","seg06"]]],[24227,30738,1,"47","seg11"],[26121,34466,1,"38","seg02"],[26502,35904,-1,"41","seg05",[[29770,32937,1,"46","seg10",[[32328,32359,1,"37","seg01"]]]]],[36615,37227,-1,"45","seg09"],[39264,48453,-1,"51","seg15",[[41136,47829,-1,"50","seg14"]]],[44190,50000,-1,"43","seg07"],[49405,50000,1,"49","seg13"]],"key":"Example alignments","className":"feature4","clientConfig":null,"arrowheadClass":null,"subfeatureHeaders":["start","end","strand","type"],"label":"Alignments","type":"FeatureTrack","sublistIndex":5,"lazyfeatureUrlTemplate":"lazyfeatures-{chunk}.json"}
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/CDS/hist-50000-0.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/CDS/hist-50000-0.json
deleted file mode 100644
index b9b82b1c98..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/CDS/hist-50000-0.json
+++ /dev/null
@@ -1 +0,0 @@
-[3,0]
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/CDS/names.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/CDS/names.json
deleted file mode 100644
index 28c3c9bf85..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/CDS/names.json
+++ /dev/null
@@ -1 +0,0 @@
-[[["Apple1"],"CDS","Apple1","ctgA",9999,11500,"52"],[["Apple3"],"CDS","Apple3","ctgA",17399,23000,"54"],[["Apple2"],"CDS","Apple2","ctgA",12999,17200,"53"]]
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/CDS/trackData.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/CDS/trackData.json
deleted file mode 100644
index fbd95efbfc..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/CDS/trackData.json
+++ /dev/null
@@ -1 +0,0 @@
-{"histogramMeta":[{"basesPerBin":"50000","arrayParams":{"length":2,"chunkSize":10000,"urlTemplate":"hist-50000-{chunk}.json"}}],"subfeatureClasses":null,"headers":["start","end","strand","id","name","phase"],"lazyIndex":2,"featureCount":3,"histStats":[{"bases":50000,"max":3,"mean":1.5}],"featureNCList":[[9999,11500,1,"52","Apple1","0"],[12999,17200,1,"53","Apple2","0"],[17399,23000,1,"54","Apple3",null]],"key":"Predicted genes","className":"cds","clientConfig":null,"arrowheadClass":null,"subfeatureHeaders":["start","end","strand","type"],"label":"CDS","type":"FeatureTrack","sublistIndex":6,"lazyfeatureUrlTemplate":"lazyfeatures-{chunk}.json","urlTemplate":"http://example.com/{name}-{start}-{end}"}
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Clones/hist-200000-0.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Clones/hist-200000-0.json
deleted file mode 100644
index bace2a0be1..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Clones/hist-200000-0.json
+++ /dev/null
@@ -1 +0,0 @@
-[1]
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Clones/names.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Clones/names.json
deleted file mode 100644
index 4722a2ec61..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Clones/names.json
+++ /dev/null
@@ -1 +0,0 @@
-[[["b101.2"],"Clones","b101.2","ctgA",999,20000,"81"]]
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Clones/trackData.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Clones/trackData.json
deleted file mode 100644
index e39237d1a6..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Clones/trackData.json
+++ /dev/null
@@ -1 +0,0 @@
-{"histogramMeta":[{"basesPerBin":"200000","arrayParams":{"length":1,"chunkSize":10000,"urlTemplate":"hist-200000-{chunk}.json"}}],"subfeatureClasses":null,"headers":["start","end","strand","id","name"],"lazyIndex":2,"featureCount":1,"histStats":[{"bases":200000,"max":1,"mean":1}],"featureNCList":[[999,20000,0,"81","b101.2"]],"key":"Fingerprinted BACs","className":"exon","clientConfig":null,"arrowheadClass":null,"subfeatureHeaders":["start","end","strand","type"],"label":"Clones","type":"FeatureTrack","sublistIndex":5,"lazyfeatureUrlTemplate":"lazyfeatures-{chunk}.json"}
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/EST/hist-50000-0.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/EST/hist-50000-0.json
deleted file mode 100644
index c94180ee8a..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/EST/hist-50000-0.json
+++ /dev/null
@@ -1 +0,0 @@
-[6,0]
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/EST/names.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/EST/names.json
deleted file mode 100644
index a5f2ad4916..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/EST/names.json
+++ /dev/null
@@ -1 +0,0 @@
-[[["agt830.5"],"EST","agt830.5","ctgA",1049,3202,"84"],[["agt767.3"],"EST","agt767.3","ctgA",7999,9000,"89"],[["agt221.3"],"EST","agt221.3","ctgA",7499,8000,"87"],[["agt221.5"],"EST","agt221.5","ctgA",1049,7300,"86"],[["agt767.5"],"EST","agt767.5","ctgA",1149,7200,"88"],[["agt830.3"],"EST","agt830.3","ctgA",5409,7503,"85"]]
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/EST/trackData.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/EST/trackData.json
deleted file mode 100644
index 28bd233734..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/EST/trackData.json
+++ /dev/null
@@ -1 +0,0 @@
-{"histogramMeta":[{"basesPerBin":"50000","arrayParams":{"length":2,"chunkSize":10000,"urlTemplate":"hist-50000-{chunk}.json"}}],"subfeatureClasses":null,"headers":["start","end","strand","id","name"],"lazyIndex":2,"featureCount":6,"histStats":[{"bases":50000,"max":6,"mean":3}],"featureNCList":[[1049,7300,1,"86","agt221.5",[[1049,3202,1,"84","agt830.5"],[1149,7200,1,"88","agt767.5"]]],[5409,7503,-1,"85","agt830.3"],[7499,8000,-1,"87","agt221.3"],[7999,9000,-1,"89","agt767.3"]],"key":"ESTs","className":"est","clientConfig":null,"arrowheadClass":null,"subfeatureHeaders":["start","end","strand","type"],"label":"EST","type":"FeatureTrack","sublistIndex":5,"lazyfeatureUrlTemplate":"lazyfeatures-{chunk}.json"}
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/ExampleFeatures/hist-10000-0.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/ExampleFeatures/hist-10000-0.json
deleted file mode 100644
index ccce2da2bc..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/ExampleFeatures/hist-10000-0.json
+++ /dev/null
@@ -1 +0,0 @@
-[4,3,4,3,4,1]
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/ExampleFeatures/names.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/ExampleFeatures/names.json
deleted file mode 100644
index e4ee658948..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/ExampleFeatures/names.json
+++ /dev/null
@@ -1 +0,0 @@
-[[["f13"],"ExampleFeatures","f13","ctgA",19156,22915,"7"],[["f12"],"ExampleFeatures","f12","ctgA",49757,50000,"16"],[["f02"],"ExampleFeatures","f02","ctgA",24561,28338,"10"],[["f09"],"ExampleFeatures","f09","ctgA",36033,38167,"11"],[["f03"],"ExampleFeatures","f03","ctgA",36648,40440,"12"],[["f11"],"ExampleFeatures","f11","ctgA",46989,48410,"15"],[["f07"],"ExampleFeatures","f07","ctgA",1658,1984,"2"],[["Remark:hga","hga"],"ExampleFeatures","Remark:hga","ctgA",999,2000,"17"],[["f01"],"ExampleFeatures","f01","ctgA",44704,47713,"14"],[["f04"],"ExampleFeatures","f04","ctgA",37241,38653,"13"],[["f10"],"ExampleFeatures","f10","ctgA",15328,15533,"6"],[["f06"],"ExampleFeatures","f06","ctgA",3013,6130,"3"],[["f14"],"ExampleFeatures","f14","ctgA",23071,23185,"9"],[["f15"],"ExampleFeatures","f15","ctgA",22131,24633,"8"],[["f05"],"ExampleFeatures","f05","ctgA",4714,5968,"4"],[["f08"],"ExampleFeatures","f08","ctgA",13279,16394,"5"]]
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/ExampleFeatures/trackData.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/ExampleFeatures/trackData.json
deleted file mode 100644
index 8a9b2eda70..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/ExampleFeatures/trackData.json
+++ /dev/null
@@ -1 +0,0 @@
-{"histogramMeta":[{"basesPerBin":"10000","arrayParams":{"length":6,"chunkSize":10000,"urlTemplate":"hist-10000-{chunk}.json"}}],"subfeatureClasses":null,"headers":["start","end","strand","id","name"],"lazyIndex":2,"featureCount":16,"histStats":[{"bases":10000,"max":4,"mean":3.16666666666667}],"featureNCList":[[999,2000,0,"17","Remark:hga",[[1658,1984,1,"2","f07"]]],[3013,6130,1,"3","f06",[[4714,5968,-1,"4","f05"]]],[13279,16394,1,"5","f08",[[15328,15533,1,"6","f10"]]],[19156,22915,-1,"7","f13"],[22131,24633,1,"8","f15",[[23071,23185,1,"9","f14"]]],[24561,28338,1,"10","f02"],[36033,38167,1,"11","f09"],[36648,40440,-1,"12","f03",[[37241,38653,1,"13","f04"]]],[44704,47713,-1,"14","f01"],[46989,48410,-1,"15","f11"],[49757,50000,-1,"16","f12"]],"key":"Example Features","className":"feature2","clientConfig":null,"arrowheadClass":null,"subfeatureHeaders":["start","end","strand","type"],"label":"ExampleFeatures","type":"FeatureTrack","sublistIndex":5,"lazyfeatureUrlTemplate":"lazyfeatures-{chunk}.json"}
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Genes/hist-200000-0.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Genes/hist-200000-0.json
deleted file mode 100644
index bace2a0be1..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Genes/hist-200000-0.json
+++ /dev/null
@@ -1 +0,0 @@
-[1]
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Genes/names.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Genes/names.json
deleted file mode 100644
index 1704902c44..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Genes/names.json
+++ /dev/null
@@ -1 +0,0 @@
-[[["EDEN"],"Genes","EDEN","ctgA",1049,9000,"60"]]
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Genes/trackData.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Genes/trackData.json
deleted file mode 100644
index 889fa282b7..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Genes/trackData.json
+++ /dev/null
@@ -1 +0,0 @@
-{"histogramMeta":[{"basesPerBin":"200000","arrayParams":{"length":1,"chunkSize":10000,"urlTemplate":"hist-200000-{chunk}.json"}}],"subfeatureClasses":null,"headers":["start","end","strand","id","name"],"lazyIndex":2,"featureCount":1,"histStats":[{"bases":200000,"max":1,"mean":1}],"featureNCList":[[1049,9000,1,"60","EDEN"]],"key":"Protein-coding genes","className":"feature5","clientConfig":null,"arrowheadClass":null,"subfeatureHeaders":["start","end","strand","type"],"label":"Genes","type":"FeatureTrack","sublistIndex":5,"lazyfeatureUrlTemplate":"lazyfeatures-{chunk}.json"}
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Motifs/hist-10000-0.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Motifs/hist-10000-0.json
deleted file mode 100644
index 4881867869..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Motifs/hist-10000-0.json
+++ /dev/null
@@ -1 +0,0 @@
-[0,7,3,4,3,0]
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Motifs/names.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Motifs/names.json
deleted file mode 100644
index 5e3290579a..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Motifs/names.json
+++ /dev/null
@@ -1 +0,0 @@
-[[["m06"],"Motifs","m06","ctgA",30577,31748,"32"],[["m04"],"Motifs","m04","ctgA",33324,35791,"33"],[["m08"],"Motifs","m08","ctgA",17022,17675,"26"],[["m13"],"Motifs","m13","ctgA",17666,17690,"27"],[["m10"],"Motifs","m10","ctgA",28341,28447,"31"],[["m09"],"Motifs","m09","ctgA",46011,48851,"35"],[["m12"],"Motifs","m12","ctgA",21747,25612,"29"],[["m02"],"Motifs","m02","ctgA",28331,30033,"30"],[["m03"],"Motifs","m03","ctgA",15395,16159,"25"],[["m07"],"Motifs","m07","ctgA",18047,18552,"28"],[["m14"],"Motifs","m14","ctgA",14730,17239,"24"],[["m11"],"Motifs","m11","ctgA",11910,15561,"22"],[["m05"],"Motifs","m05","ctgA",13800,14007,"23"],[["m01"],"Motifs","m01","ctgA",48252,48366,"36"],[["m15"],"Motifs","m15","ctgA",37496,40559,"34"]]
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Motifs/trackData.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Motifs/trackData.json
deleted file mode 100644
index 36903d0499..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Motifs/trackData.json
+++ /dev/null
@@ -1 +0,0 @@
-{"histogramMeta":[{"basesPerBin":"10000","arrayParams":{"length":6,"chunkSize":10000,"urlTemplate":"hist-10000-{chunk}.json"}}],"subfeatureClasses":null,"headers":["start","end","strand","id","name"],"lazyIndex":2,"featureCount":15,"histStats":[{"bases":10000,"max":7,"mean":2.83333333333333}],"featureNCList":[[11910,15561,1,"22","m11",[[13800,14007,-1,"23","m05"]]],[14730,17239,-1,"24","m14",[[15395,16159,1,"25","m03"]]],[17022,17675,1,"26","m08"],[17666,17690,1,"27","m13"],[18047,18552,-1,"28","m07"],[21747,25612,1,"29","m12"],[28331,30033,-1,"30","m02",[[28341,28447,-1,"31","m10"]]],[30577,31748,1,"32","m06"],[33324,35791,1,"33","m04"],[37496,40559,-1,"34","m15"],[46011,48851,1,"35","m09",[[48252,48366,1,"36","m01"]]]],"key":"Example motifs","className":"feature3","clientConfig":null,"arrowheadClass":null,"subfeatureHeaders":["start","end","strand","type"],"label":"Motifs","type":"FeatureTrack","sublistIndex":5,"lazyfeatureUrlTemplate":"lazyfeatures-{chunk}.json"}
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/NameTest/hist-50000-0.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/NameTest/hist-50000-0.json
deleted file mode 100644
index 27380f446e..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/NameTest/hist-50000-0.json
+++ /dev/null
@@ -1 +0,0 @@
-[4,0]
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/NameTest/names.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/NameTest/names.json
deleted file mode 100644
index 3068382880..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/NameTest/names.json
+++ /dev/null
@@ -1 +0,0 @@
-[[["Protein:HGB","hgb"],"NameTest","Protein:HGB","ctgA",1799,2900,"21"],[["Gene:hga","hga"],"NameTest","Gene:hga","ctgA",1099,2000,"18"],[["Gene:hgb","hgb"],"NameTest","Gene:hgb","ctgA",1599,3000,"20"],[["Protein:HGA","hga"],"NameTest","Protein:HGA","ctgA",1199,1900,"19"]]
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/NameTest/trackData.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/NameTest/trackData.json
deleted file mode 100644
index e8726f229b..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/NameTest/trackData.json
+++ /dev/null
@@ -1 +0,0 @@
-{"histogramMeta":[{"basesPerBin":"50000","arrayParams":{"length":2,"chunkSize":10000,"urlTemplate":"hist-50000-{chunk}.json"}}],"subfeatureClasses":null,"headers":["start","end","strand","id","name"],"lazyIndex":2,"featureCount":4,"histStats":[{"bases":50000,"max":4,"mean":2}],"featureNCList":[[1099,2000,1,"18","Gene:hga",[[1199,1900,1,"19","Protein:HGA"]]],[1599,3000,-1,"20","Gene:hgb",[[1799,2900,-1,"21","Protein:HGB"]]]],"key":"Name test track","className":"feature2","clientConfig":null,"arrowheadClass":null,"subfeatureHeaders":["start","end","strand","type"],"label":"NameTest","type":"FeatureTrack","sublistIndex":5,"lazyfeatureUrlTemplate":"lazyfeatures-{chunk}.json"}
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/ReadingFrame/hist-50000-0.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/ReadingFrame/hist-50000-0.json
deleted file mode 100644
index 27380f446e..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/ReadingFrame/hist-50000-0.json
+++ /dev/null
@@ -1 +0,0 @@
-[4,0]
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/ReadingFrame/names.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/ReadingFrame/names.json
deleted file mode 100644
index b24354d43d..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/ReadingFrame/names.json
+++ /dev/null
@@ -1 +0,0 @@
-[[["EDEN.3"],"ReadingFrame","EDEN.3","ctgA",1299,9000,"74"],[["EDEN.1"],"ReadingFrame","EDEN.1","ctgA",1049,9000,"61"],[["Apple3"],"ReadingFrame","Apple3","ctgA",17399,23000,"54"],[["EDEN.2"],"ReadingFrame","EDEN.2","ctgA",1049,9000,"68"]]
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/ReadingFrame/trackData.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/ReadingFrame/trackData.json
deleted file mode 100644
index 39ebb54c55..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/ReadingFrame/trackData.json
+++ /dev/null
@@ -1 +0,0 @@
-{"histogramMeta":[{"basesPerBin":"50000","arrayParams":{"length":2,"chunkSize":10000,"urlTemplate":"hist-50000-{chunk}.json"}}],"subfeatureClasses":null,"headers":["start","end","strand","id","name"],"lazyIndex":2,"featureCount":4,"histStats":[{"bases":50000,"max":4,"mean":2}],"featureNCList":[[1049,9000,1,"61","EDEN.1"],[1049,9000,1,"68","EDEN.2"],[1299,9000,1,"74","EDEN.3"],[17399,23000,1,"54","Apple3"]],"key":"Frame usage","className":"dblhelix","clientConfig":null,"arrowheadClass":null,"subfeatureHeaders":["start","end","strand","type"],"label":"ReadingFrame","type":"FeatureTrack","sublistIndex":5,"lazyfeatureUrlTemplate":"lazyfeatures-{chunk}.json"}
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Transcript/hist-200000-0.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Transcript/hist-200000-0.json
deleted file mode 100644
index bace2a0be1..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Transcript/hist-200000-0.json
+++ /dev/null
@@ -1 +0,0 @@
-[1]
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Transcript/names.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Transcript/names.json
deleted file mode 100644
index f4b392da12..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Transcript/names.json
+++ /dev/null
@@ -1 +0,0 @@
-[[["Apple3"],"Transcript","Apple3","ctgA",17399,23000,"54"]]
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Transcript/trackData.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Transcript/trackData.json
deleted file mode 100644
index 370e1c312a..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/Transcript/trackData.json
+++ /dev/null
@@ -1 +0,0 @@
-{"histogramMeta":[{"basesPerBin":"200000","arrayParams":{"length":1,"chunkSize":10000,"urlTemplate":"hist-200000-{chunk}.json"}}],"subfeatureClasses":{"CDS":"transcript-CDS","UTR":"transcript-UTR"},"headers":["start","end","strand","id","name","subfeatures"],"lazyIndex":2,"featureCount":1,"histStats":[{"bases":200000,"max":1,"mean":1}],"featureNCList":[[17399,23000,1,"54","Apple3",[[21200,23000,1,"UTR"],[18999,19500,1,"CDS"],[17999,18800,1,"CDS"],[20999,21200,1,"CDS"],[17399,17999,1,"UTR"]]]],"key":"Exonerate predictions","className":"transcript","clientConfig":null,"arrowheadClass":"transcript-arrowhead","subfeatureHeaders":["start","end","strand","type"],"label":"Transcript","type":"FeatureTrack","sublistIndex":6,"lazyfeatureUrlTemplate":"lazyfeatures-{chunk}.json"}
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/hist-100-0.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/hist-100-0.json
deleted file mode 100644
index e124da4ac7..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/hist-100-0.json
+++ /dev/null
@@ -1 +0,0 @@
-[13,22,12,13,22,31,33,28,33,38,41,38,26,33,44,40,42,54,38,36,49,50,51,39,37,39,41,41,22,29,42,39,35,38,40,37,45,39,34,37,46,48,42,37,36,31,30,39,52,46,41,43,35,34,37,31,31,41,38,32,38,40,36,31,31,39,42,39,33,38,40,36,38,38,39,45,44,37,37,36,33,37,39,36,38,40,46,39,39,43,35,37,36,38,45,45,34,31,40,42,38,31,38,47,48,38,42,46,34,40,35,31,38,38,42,41,37,35,39,41,42,41,34,46,50,46,41,41,50,47,51,52,40,38,44,43,37,38,40,52,49,35,35,31,39,44,42,43,45,43,33,43,46,38,33,33,34,31,38,27,30,41,40,38,38,43,45,46,40,31,36,39,38,35,28,28,42,45,30,27,34,40,49,44,35,40,40,41,51,42,32,33,30,31,32,36,44,35,34,39,35,41,49,45,32,32,36,40,39,37,34,37,40,37,38,36,33,34,38,34,32,35,38,44,42,37,52,71,53,44,46,38,43,50,51,46,40,36,34,39,40,36,44,50,53,53,43,41,46,41,46,45,36,28,38,49,43,36,36,41,40,37,35,35,40,36,34,34,31,31,39,50,44,30,31,39,44,49,48,39,32,36,37,34,41,46,39,35,31,31,35,38,41,38,38,46,50,40,33,36,36,32,32,42,45,37,37,39,34,38,44,42,44,45,43,41,43,41,43,38,32,36,33,33,36,30,33,28,18,33,40,34,25,27,32,35,51,53,52,41,28,35,32,48,49,29,23,31,37,45,49,47,42,35,30,38,43,34,33,34,41,43,44,49,40,37,38,31,36,37,36,36,36,34,29,31,42,46,41,42,34,28,34,34,27,30,33,38,45,42,39,37,33,35,33,30,32,40,48,48,36,35,37,42,38,46,53,43,44,38,34,33,27,35,41,38,49,50,37,32,42,45,46,48,43,49,44,37,43,37,34,34,36,43,48,41,35,37,39,48,45,30,32,39,44,45,42,41,32,47,50,31,39,47,41,28,31,39,35,37,36,37,43,42,44,42,43,46,48,45,43,37,30,46,57,45,35,37,43,42,46,43,39,39,37,42,37,32,38,45,40,37,48,41,38,35,19,15,20,11,0]
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/hist-1000-0.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/hist-1000-0.json
deleted file mode 100644
index 999a2cf7ab..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/hist-1000-0.json
+++ /dev/null
@@ -1 +0,0 @@
-[131,217,223,214,220,197,202,215,211,211,224,210,239,244,229,191,208,190,224,189,210,197,243,236,243,220,194,221,197,215,207,230,172,209,196,214,214,203,191,208,223,204,232,217,228,215,233,229,221,164,0]
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/hist-20-0.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/hist-20-0.json
deleted file mode 100644
index 5f5d6714a5..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/hist-20-0.json
+++ /dev/null
@@ -1 +0,0 @@
-[5,5,9,11,13,14,12,16,12,11,9,9,7,3,4,6,10,10,9,11,12,12,9,10,14,15,12,12,21,22,22,24,25,26,19,17,18,15,17,16,16,17,18,23,22,22,21,24,23,20,24,27,31,26,27,29,25,21,17,20,19,16,14,14,17,19,16,16,21,24,29,29,29,31,27,29,25,22,21,19,19,19,18,22,26,27,34,34,36,36,31,31,25,21,16,15,19,22,24,28,31,29,30,27,27,28,33,33,31,33,36,35,28,28,26,23,20,16,20,20,19,24,25,27,24,24,28,23,21,22,25,27,23,24,28,27,25,21,21,24,20,17,13,10,9,8,12,15,22,26,28,29,27,25,22,26,27,24,23,25,27,20,19,18,17,17,18,22,24,26,27,26,25,22,19,20,23,25,23,23,23,22,23,25,28,25,27,28,25,24,17,20,21,20,22,21,27,27,26,25,22,25,23,21,28,29,27,32,29,31,24,24,27,23,26,20,21,24,26,22,20,27,25,22,22,20,21,16,19,17,18,19,19,20,18,20,23,24,24,24,24,28,26,28,34,32,32,30,27,25,18,22,25,23,30,29,33,27,26,28,22,21,18,22,20,18,22,19,20,22,24,24,24,24,24,23,20,21,16,14,19,19,20,19,20,20,20,22,21,25,25,29,27,23,22,19,18,17,14,18,20,24,25,29,27,24,25,21,24,20,20,20,18,21,20,21,23,21,21,20,18,18,20,22,21,25,23,24,23,22,26,25,23,26,24,26,24,23,25,20,24,23,20,20,18,21,18,20,26,25,24,20,23,20,19,20,21,22,23,25,23,20,22,23,24,26,24,30,28,26,20,19,23,21,22,25,31,31,29,28,28,27,23,24,22,26,28,24,24,21,24,18,19,22,22,22,22,23,19,20,19,20,20,20,21,22,21,22,23,22,26,25,29,24,21,22,20,20,18,20,24,24,27,23,24,24,22,26,22,24,27,29,30,27,29,28,22,20,19,17,18,22,25,28,28,27,27,23,21,22,20,21,19,21,24,19,25,26,27,25,23,24,21,19,19,21,22,25,22,25,26,24,26,28,28,30,32,29,25,25,26,21,18,18,18,15,15,17,19,22,24,26,25,22,25,28,27,26,24,28,26,18,20,20,21,18,19,21,16,18,19,16,17,24,28,29,29,33,33,28,26,25,28,30,28,27,27,25,23,19,23,24,27,27,31,30,27,24,24,25,20,19,22,20,21,20,23,27,26,29,31,28,24,21,15,17,14,18,18,21,20,19,18,16,22,21,26,26,25,27,22,25,23,25,27,27,30,31,29,24,21,22,21,19,19,21,25,20,21,20,22,22,20,21,25,25,23,25,23,27,21,24,27,27,29,32,33,29,24,22,19,12,12,17,19,21,27,31,34,32,32,29,28,29,26,26,30,32,31,29,28,24,22,22,23,23,24,25,29,29,29,23,29,32,30,31,30,33,29,27,32,33,32,32,33,34,35,28,30,29,31,26,18,20,19,20,20,26,25,26,24,22,24,25,26,25,24,29,30,23,22,21,22,23,17,19,23,24,28,27,26,28,28,26,24,25,25,28,29,36,38,34,33,27,25,19,17,20,21,22,24,24,25,21,20,19,20,16,17,18,23,25,24,26,26,26,26,25,26,26,22,24,21,24,25,29,32,32,30,25,25,22,22,31,26,28,28,30,27,23,22,20,19,17,17,17,20,24,30,32,33,33,30,28,23,21,24,22,26,25,23,21,19,20,15,15,18,20,24,23,22,21,22,21,16,17,20,21,20,21,24,21,22,24,22,22,19,17,12,10,11,12,12,19,24,25,27,23,27,26,23,21,21,28,26,21,21,25,26,21,23,27,25,21,26,25,24,22,28,30,27,26,25,30,27,29,30,31,33,27,27,25,24,19,17,18,19,17,17,19,20,24,27,24,24,24,24,23,20,21,23,21,21,20,22,23,25,26,24,20,21,18,17,13,13,17,15,19,18,18,21,18,19,23,26,26,24,29,30,25,20,24,23,18,16,11,14,14,18,20,22,25,23,21,20,21,18,24,26,27,30,31,33,28,30,30,26,23,23,24,20,22,22,22,22,21,22,23,23,27,27,25,27,23,24,23,23,27,27,28,28,27,30,28,31,30,31,29,22,23,20,19,16,16,20,20,22,21,22,20,19,20,15,17,16,19,21,21,20,20,23,20,17,16,17,20,18,20,21,25,26,24,25,27,28,28,26,21,18,18,16,15,20,24,25,25,27,27,23,21,22,20,24,21,18,22,25,27,24,24,28,27,26,30,29,28,27,31,26,23,21,19,18,15,17,18,18,17,20,21,22,20,20,22,25,24,19,23,22,28,24,21,24,23,27,21,21,22,23,25,21,20,25,23,21,20,22,21,19,24,27,25,26,26,24,19,19,22,23,23,25,26,28,24,21,21,19,22,19,19,20,18,22,15,18,19,22,22,24,25,22,20,20,24,23,20,19,24,21,19,16,20,23,18,20,23,26,25,20,22,24,24,24,22,24,24,23,22,20,27,27,27,26,23,26,23,24,24,26,23,22,27,31,35,36,41,44,41,39,41,40,41,34,32,26,24,23,24,28,27,30,28,29,24,23,22,23,23,22,23,24,27,29,28,28,32,30,28,28,29,30,31,32,32,30,30,29,28,24,25,23,23,22,22,24,22,23,25,24,21,20,20,21,17,20,20,23,24,23,27,24,23,21,24,25,20,20,22,24,23,25,26,26,25,29,32,30,31,34,35,29,31,30,29,31,31,34,32,34,33,32,30,28,25,22,19,16,22,23,25,30,30,31,26,28,24,25,28,25,26,27,25,26,24,29,26,26,26,25,28,23,27,26,25,23,18,17,15,15,15,21,20,22,26,29,29,25,31,29,28,24,23,23,22,26,23,25,27,28,23,22,23,23,23,22,26,25,26,25,25,23,24,22,20,22,20,25,22,20,22,21,24,19,22,22,19,19,24,24,21,24,27,28,25,24,25,22,19,22,19,20,24,23,23,19,23,22,19,18,17,19,18,17,15,17,18,15,17,18,20,19,22,28,26,29,28,33,32,27,30,33,32,30,28,25,23,16,16,11,11,11,13,18,18,24,26,28,26,23,26,24,21,25,25,28,28,30,31,31,31,31,30,28,30,28,27,23,23,21,21,21,19,18,20,22,25,20,19,25,23,23,19,23,26,20,21,20,20,18,17,20,19,25,29,28,28,30,34,25,25,24,29,24,23,24,21,19,17,19,19,19,19,19,18,18,16,18,21,21,22,24,25,22,22,22,23,21,19,24,22,28,24,24,28,24,21,19,20,22,19,22,25,24,25,23,28,24,26,28,29,30,28,37,32,32,27,24,25,17,19,17,16,18,18,21,20,23,26,27,24,23,23,22,19,20,18,17,14,16,20,17,18,18,22,22,18,24,29,32,31,30,32,28,25,24,21,20,21,22,23,20,20,20,23,25,22,21,23,24,24,23,24,24,23,22,22,21,21,26,26,29,26,23,28,24,23,23,23,28,26,24,29,27,31,28,26,30,28,32,24,28,28,26,25,23,27,22,26,27,24,23,25,28,24,24,27,29,27,26,23,23,21,24,24,26,27,24,26,20,20,18,23,25,21,22,21,20,18,20,20,19,21,21,20,17,19,23,22,21,19,21,22,19,23,21,20,16,17,17,14,16,22,27,22,24,23,20,16,9,11,7,10,13,13,14,19,18,17,17,21,20,22,24,28,27,23,26,23,21,16,16,15,14,13,13,14,13,13,16,18,21,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\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/hist-200-0.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/hist-200-0.json
deleted file mode 100644
index 7eff81dd89..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/hist-200-0.json
+++ /dev/null
@@ -1 +0,0 @@
-[22,22,40,46,51,55,46,60,71,65,78,68,56,59,47,64,60,62,61,53,67,59,48,52,68,60,54,49,53,54,56,50,52,60,56,59,57,64,62,54,53,57,58,59,57,55,58,67,54,62,54,62,63,61,59,55,58,61,54,58,60,63,75,66,72,74,62,65,59,73,68,50,59,63,64,62,67,54,52,46,50,58,61,70,56,55,54,45,62,47,57,67,58,64,66,48,47,53,57,53,59,69,49,57,58,56,60,56,52,53,50,62,60,88,79,65,69,72,57,56,58,69,79,67,66,66,48,61,59,57,58,53,54,49,46,64,55,50,69,64,51,53,62,56,48,56,59,63,65,51,52,58,63,57,57,65,66,63,61,56,49,50,47,39,38,54,41,50,71,61,44,64,60,42,64,75,60,56,60,51,61,69,62,53,52,52,50,45,62,60,47,47,43,54,63,56,52,49,56,71,58,62,70,75,60,49,50,61,70,53,61,67,70,65,59,50,59,63,52,66,57,50,63,60,65,64,62,52,50,56,58,64,66,68,71,60,62,77,57,64,63,56,59,54,63,62,64,51,28,20,0]
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/hist-40-0.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/hist-40-0.json
deleted file mode 100644
index cc7cc039c3..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/hist-40-0.json
+++ /dev/null
@@ -1 +0,0 @@
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\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/hist-400-0.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/hist-400-0.json
deleted file mode 100644
index 3111c9a55b..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/hist-400-0.json
+++ /dev/null
@@ -1 +0,0 @@
-[35,68,88,86,107,116,96,86,97,98,104,87,111,84,85,87,91,92,102,98,89,97,94,103,96,100,109,89,99,95,105,116,124,105,110,99,102,107,100,79,88,107,95,82,89,101,99,98,83,96,104,89,95,96,86,94,130,117,115,96,108,120,111,97,100,93,88,95,94,108,85,97,86,104,101,94,102,99,107,99,82,75,72,75,112,92,91,111,98,94,109,93,88,81,102,81,81,100,82,103,98,113,93,88,102,109,107,93,99,100,95,104,96,90,87,100,112,108,107,99,102,91,100,99,39,0]
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/lazyfeatures-0.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/lazyfeatures-0.json
deleted file mode 100644
index 0748c2d47c..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/lazyfeatures-0.json
+++ /dev/null
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\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/lazyfeatures-1.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/lazyfeatures-1.json
deleted file mode 100644
index 55ed618f04..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/lazyfeatures-1.json
+++ /dev/null
@@ -1 +0,0 @@
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\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/lazyfeatures-2.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/lazyfeatures-2.json
deleted file mode 100644
index 38148d539c..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/lazyfeatures-2.json
+++ /dev/null
@@ -1 +0,0 @@
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\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/lazyfeatures-3.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/lazyfeatures-3.json
deleted file mode 100644
index c2a56bd328..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/lazyfeatures-3.json
+++ /dev/null
@@ -1 +0,0 @@
-[[48340,48441,1],[48341,48442,-1],[48356,48457,1],[48366,48467,-1],[48375,48476,1],[48376,48477,-1],[48377,48478,-1],[48378,48479,1],[48379,48480,-1],[48403,48504,1],[48415,48516,1],[48425,48526,-1],[48426,48527,1],[48426,48527,-1],[48430,48531,1],[48436,48537,-1],[48444,48545,-1],[48446,48547,1],[48453,48554,-1],[48454,48555,1],[48460,48561,1],[48470,48571,1],[48470,48571,1],[48477,48578,-1],[48478,48579,1],[48481,48582,-1],[48489,48590,-1],[48489,48590,-1],[48491,48592,1],[48501,48602,1],[48505,48606,1],[48516,48617,-1],[48527,48628,-1],[48530,48631,-1],[48540,48641,-1],[48544,48645,1],[48546,48647,-1],[48554,48655,1],[48555,48656,1],[48558,48659,-1],[48558,48659,-1],[48559,48660,-1],[48565,48666,1],[48567,48668,-1],[48577,48678,1],[48581,48682,-1],[48584,48685,1],[48588,48689,1],[48591,48692,1],[48595,48696,-1],[48598,48699,-1],[48601,48702,1],[48601,48702,1],[48606,48707,1],[48610,48711,-1],[48614,48715,1],[48628,48729,-1],[48629,48730,-1],[48630,48731,1],[48633,48734,1],[48647,48748,1],[48660,48761,-1],[48673,48774,1],[48685,48786,1],[48688,48789,-1],[48699,48800,-1],[48705,48806,-1],[48711,48812,-1],[48713,48814,-1],[48715,48816,-1],[48716,48817,1],[48720,48821,1],[48741,48842,-1],[48749,48850,1],[48751,48852,1],[48751,48852,-1],[48769,48870,1],[48781,48882,-1],[48783,48884,1],[48788,48889,1],[48793,48894,1],[48794,48895,-1],[48796,48897,1],[48805,48906,-1],[48812,48913,-1],[48819,48920,1],[48837,48938,1],[48852,48953,1],[48852,48953,1],[48857,48958,1],[48858,48959,1],[48860,48961,-1],[48866,48967,-1],[48871,48972,1],[48872,48973,-1],[48877,48978,-1],[48880,48981,1],[48882,48983,-1],[48887,48988,1],[48888,48989,1],[48888,48989,-1],[48888,48989,1],[48889,48990,-1],[48919,49020,-1],[48928,49029,-1],[48928,49029,-1],[48929,49030,1],[48936,49037,-1],[48942,49043,1],[48944,49045,1],[48944,49045,-1],[48947,49048,1],[48947,49048,-1],[48950,49051,-1],[48951,49052,-1],[48953,49054,1],[48955,49056,-1],[48956,49057,-1],[48956,49057,1],[48957,49058,1],[48961,49062,1],[48962,49063,1],[48964,49065,1],[48972,49073,-1],[48979,49080,1],[48984,49085,1],[48994,49095,1],[48995,49096,-1],[49000,49101,1],[49004,49105,-1],[49009,49110,1],[49017,49118,-1],[49024,49125,-1],[49056,49157,1],[49062,49163,-1],[49072,49173,-1],[49073,49174,-1],[49081,49182,-1],[49092,49193,-1],[49092,49193,-1],[49093,49194,-1],[49096,49197,1],[49099,49200,1],[49107,49208,1],[49115,49216,1],[49118,49219,1],[49129,49230,1],[49137,49238,1],[49138,49239,-1],[49140,49241,-1],[49142,49243,-1],[49145,49246,1],[49146,49247,-1],[49147,49248,1],[49148,49249,-1],[49153,49254,-1],[49161,49262,-1],[49168,49269,1],[49174,49275,-1],[49179,49280,1],[49183,49284,1],[49184,49285,-1],[49191,49292,1],[49191,49292,1],[49197,49298,-1],[49206,49307,1],[49207,49308,1],[49209,49310,1],[49213,49314,-1],[49213,49314,1],[49217,49318,-1],[49217,49318,1],[49228,49329,1],[49231,49332,1],[49234,49335,1],[49236,49337,-1],[49238,49339,1],[49241,49342,-1],[49251,49352,1],[49259,49360,-1],[49265,49366,1],[49270,49371,1],[49272,49373,1],[49282,49383,-1],[49284,49385,1],[49289,49390,1],[49289,49390,1],[49291,49392,1],[49291,49392,-1],[49297,49398,-1],[49304,49405,-1],[49311,49412,-1],[49323,49424,1],[49329,49430,1],[49332,49433,1],[49341,49442,-1],[49345,49446,-1],[49347,49448,1],[49359,49460,-1],[49374,49475,1],[49379,49480,-1],[49381,49482,-1],[49395,49496,1],[49396,49497,-1],[49397,49498,1],[49397,49498,-1],[49404,49505,1],[49410,49511,-1],[49411,49512,1],[49412,49513,-1],[49418,49519,1],[49426,49527,1],[49427,49528,-1],[49438,49539,-1],[49445,49546,-1],[49450,49551,-1],[49454,49555,1],[49460,49561,-1],[49463,49564,1],[49466,49567,1],[49473,49574,1],[49477,49578,-1],[49480,49581,-1],[49483,49584,-1],[49486,49587,-1],[49491,49592,-1],[49494,49595,1],[49496,49597,1],[49500,49601,1],[49501,49602,1],[49511,49612,1],[49514,49615,1],[49518,49619,1],[49532,49633,-1],[49534,49635,1],[49539,49640,-1],[49545,49646,-1],[49558,49659,-1],[49562,49663,-1],[49577,49678,-1],[49578,49679,-1],[49615,49716,-1],[49637,49738,-1],[49657,49758,-1],[49668,49769,-1],[49686,49787,-1],[49693,49794,-1],[49713,49814,-1],[49720,49821,-1],[49724,49825,-1],[49741,49842,-1],[49741,49842,-1],[49747,49848,-1],[49763,49864,-1],[49781,49882,-1],[49798,49899,-1],[49808,49909,-1],[49814,49915,-1],[49836,49937,-1],[49841,49942,-1],[49845,49946,-1],[49847,49948,-1],[49854,49955,-1],[49876,49977,-1],[49886,49987,-1],[49886,49987,-1],[49886,49987,-1]]
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/trackData.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/trackData.json
deleted file mode 100644
index b9117f2a4f..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/trackData.json
+++ /dev/null
@@ -1 +0,0 @@
-{"histogramMeta":[{"basesPerBin":"20","arrayParams":{"length":2501,"chunkSize":10000,"urlTemplate":"hist-20-{chunk}.json"}},{"basesPerBin":"40","arrayParams":{"length":1251,"chunkSize":10000,"urlTemplate":"hist-40-{chunk}.json"}},{"basesPerBin":"100","arrayParams":{"length":501,"chunkSize":10000,"urlTemplate":"hist-100-{chunk}.json"}},{"basesPerBin":"200","arrayParams":{"length":251,"chunkSize":10000,"urlTemplate":"hist-200-{chunk}.json"}},{"basesPerBin":"400","arrayParams":{"length":126,"chunkSize":10000,"urlTemplate":"hist-400-{chunk}.json"}},{"basesPerBin":"1000","arrayParams":{"length":51,"chunkSize":10000,"urlTemplate":"hist-1000-{chunk}.json"}}],"subfeatureClasses":null,"headers":["start","end","strand"],"lazyIndex":2,"featureCount":9596,"histStats":[{"bases":20,"max":44,"mean":23.2163134746102},{"bases":40,"max":50,"mean":27.123101518785},{"bases":100,"max":71,"mean":38.497005988024},{"bases":200,"max":88,"mean":57.7450199203187},{"bases":400,"max":130,"mean":95.531746031746},{"bases":1000,"max":244,"mean":207.352941176471}],"featureNCList":[[2,17152,{"chunk":0}],[17055,32741,{"chunk":1}],[32644,48432,{"chunk":2}],[48340,49987,{"chunk":3}]],"key":"Simulated next-gen reads","className":"basic","clientConfig":{"histScale":"2","featureCss":"background-color: #66F; height: 8px","histCss":"background-color: #88F"},"arrowheadClass":null,"subfeatureHeaders":null,"label":"bam_simulated","type":"FeatureTrack","sublistIndex":3,"lazyfeatureUrlTemplate":"lazyfeatures-{chunk}.json"}
\ No newline at end of file
diff --git a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/volvox_microarray.wig.json b/tests/data/volvox_formatted_1_2_1/tracks/ctgA/volvox_microarray.wig.json
deleted file mode 100644
index eb1b60b258..0000000000
--- a/tests/data/volvox_formatted_1_2_1/tracks/ctgA/volvox_microarray.wig.json
+++ /dev/null
@@ -1,85 +0,0 @@
-{
-   "zoomLevels" : [
-      {
-         "urlPrefix" : "tiles/volvox_microarray.wig/ctgA/1/",
-         "height" : 100,
-         "basesPerTile" : 2000
-      },
-      {
-         "urlPrefix" : "tiles/volvox_microarray.wig/ctgA/2/",
-         "height" : 100,
-         "basesPerTile" : 4000
-      },
-      {
-         "urlPrefix" : "tiles/volvox_microarray.wig/ctgA/5/",
-         "height" : 100,
-         "basesPerTile" : 10000
-      },
-      {
-         "urlPrefix" : "tiles/volvox_microarray.wig/ctgA/10/",
-         "height" : 100,
-         "basesPerTile" : 20000
-      },
-      {
-         "urlPrefix" : "tiles/volvox_microarray.wig/ctgA/20/",
-         "height" : 100,
-         "basesPerTile" : 40000
-      },
-      {
-         "urlPrefix" : "tiles/volvox_microarray.wig/ctgA/50/",
-         "height" : 100,
-         "basesPerTile" : 100000
-      },
-      {
-         "urlPrefix" : "tiles/volvox_microarray.wig/ctgA/100/",
-         "height" : 100,
-         "basesPerTile" : 200000
-      },
-      {
-         "urlPrefix" : "tiles/volvox_microarray.wig/ctgA/200/",
-         "height" : 100,
-         "basesPerTile" : 400000
-      },
-      {
-         "urlPrefix" : "tiles/volvox_microarray.wig/ctgA/500/",
-         "height" : 100,
-         "basesPerTile" : 1000000
-      },
-      {
-         "urlPrefix" : "tiles/volvox_microarray.wig/ctgA/1000/",
-         "height" : 100,
-         "basesPerTile" : 2000000
-      },
-      {
-         "urlPrefix" : "tiles/volvox_microarray.wig/ctgA/2000/",
-         "height" : 100,
-         "basesPerTile" : 4000000
-      },
-      {
-         "urlPrefix" : "tiles/volvox_microarray.wig/ctgA/5000/",
-         "height" : 100,
-         "basesPerTile" : 10000000
-      },
-      {
-         "urlPrefix" : "tiles/volvox_microarray.wig/ctgA/10000/",
-         "height" : 100,
-         "basesPerTile" : 20000000
-      },
-      {
-         "urlPrefix" : "tiles/volvox_microarray.wig/ctgA/20000/",
-         "height" : 100,
-         "basesPerTile" : 40000000
-      },
-      {
-         "urlPrefix" : "tiles/volvox_microarray.wig/ctgA/50000/",
-         "height" : 100,
-         "basesPerTile" : 100000000
-      },
-      {
-         "urlPrefix" : "tiles/volvox_microarray.wig/ctgA/100000/",
-         "height" : 100,
-         "basesPerTile" : 200000000
-      }
-   ],
-   "tileWidth" : 2000
-}
diff --git a/tests/dist b/tests/dist
new file mode 120000
index 0000000000..85d8c32f3a
--- /dev/null
+++ b/tests/dist
@@ -0,0 +1 @@
+../dist
\ No newline at end of file
diff --git a/tests/js_tests/index.html b/tests/js_tests/index.html
index a78c151221..016d151eea 100644
--- a/tests/js_tests/index.html
+++ b/tests/js_tests/index.html
@@ -1,5 +1,3 @@
-<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"
-  "http://www.w3.org/TR/html4/loose.dtd">
 <html>
 <head>
   <meta charset="utf-8">
@@ -7,73 +5,14 @@
 
   <link rel="shortcut icon" type="image/png" href="lib/jasmine-1.2.0/jasmine_favicon.png">
   <link rel="stylesheet" type="text/css" href="lib/jasmine-1.2.0/jasmine.css">
+
   <script type="text/javascript" src="lib/jasmine-1.2.0/jasmine.js"></script>
   <script type="text/javascript" src="lib/jasmine-1.2.0/jasmine-html.js"></script>
 
-  <!-- include source files here... -->
-  <script type="text/javascript" src="../../src/dojo/dojo.js" data-dojo-config="async: 1" ></script>
-
   <script type="text/javascript">
-    require( { baseUrl: '../../src',
-               packages: [ 'dojo', 'dijit', 'dojox', 'jszlib',
-                            { name: 'lazyload',  main: 'lazyload' },
-                            'dgrid',
-                            'xstyle',
-                            'put-selector',
-                            'FileSaver',
-                            'dstore',
-                            { name: 'jDataView', location: 'jDataView/src', main: 'jdataview' },
-                            'JBrowse'
-                         ]
-              },
-              ['dojo/ready','JBrowse/Browser'],
-              function( ready,Browser ) {
-
-      var jasmineEnv = jasmine.getEnv();
-      jasmineEnv.updateInterval = 1000;
-
-      var htmlReporter = new jasmine.HtmlReporter();
 
-      jasmineEnv.addReporter(htmlReporter);
-
-      jasmineEnv.specFilter = function(spec) {
-        return htmlReporter.specFilter(spec);
-      };
-      ready( function() {execJasmine();});
-      function execJasmine() {
-        jasmineEnv.execute();
-      }
-    });
   </script>
-
-  <!-- include spec files here... -->
-  <script type="text/javascript" src="spec/ExportGFF3.spec.js"></script>
-  <script type="text/javascript" src="spec/QueryParamConfigMapper.spec.js"></script>
-  <script type="text/javascript" src="spec/LazyArray.spec.js"></script>
-  <script type="text/javascript" src="spec/FeatureLayout.spec.js"></script>
-  <script type="text/javascript" src="spec/BigWig.spec.js"></script>
-  <script type="text/javascript" src="spec/ConfigManager.spec.js"></script>
-  <script type="text/javascript" src="spec/BAM.spec.js"></script>
-  <script type="text/javascript" src="spec/RemoteBinaryFile.spec.js"></script>
-  <script type="text/javascript" src="spec/Util.spec.js"></script>
-  <script type="text/javascript" src="spec/AddFiles.spec.js"></script>
-  <script type="text/javascript" src="spec/GBrowseParser.spec.js"></script>
-  <script type="text/javascript" src="spec/NestedFrequencyTable.spec.js"></script>
-  <script type="text/javascript" src="spec/TabixIndex.spec.js"></script>
-  <script type="text/javascript" src="spec/TabixIndexedFile.spec.js"></script>
-  <script type="text/javascript" src="spec/RESTStore.spec.js"></script>
-  <script type="text/javascript" src="spec/RegularizeRefSeqs.spec.js"></script>
-  <script type="text/javascript" src="spec/GFF3.spec.js"></script>
-  <script type="text/javascript" src="spec/SPARQLStore.spec.js"></script>
-  <script type="text/javascript" src="spec/SequenceChunkStore.spec.js"></script>
-  <script type="text/javascript" src="spec/GFF3Tabix.spec.js"></script>
-  <script type="text/javascript" src="spec/BEDTabix.spec.js"></script>
-  <script type="text/javascript" src="spec/BED.spec.js"></script>
-  <script type="text/javascript" src="spec/TwoBit.spec.js"></script>
-  <script type="text/javascript" src="spec/SequenceTrack.spec.js"></script>
-
-  <script type="text/javascript" src="spec/VCF.spec.js"></script>
-
+  <script type="text/javascript" src="../../dist/run_jasmine.bundle.js"></script>
 
 </head>
 
diff --git a/tests/js_tests/lib/jasmine-1.2.0/jasmine.js b/tests/js_tests/lib/jasmine-1.2.0/jasmine.js
index 03bf89a0c4..451ff4a0f6 100644
--- a/tests/js_tests/lib/jasmine-1.2.0/jasmine.js
+++ b/tests/js_tests/lib/jasmine-1.2.0/jasmine.js
@@ -2251,6 +2251,7 @@ jasmine.Spec.prototype.fail = function (e) {
     message: e ? jasmine.util.formatException(e) : 'Exception',
     trace: { stack: e.stack }
   });
+  console.error(e);
   this.results_.addResult(expectationResult);
 };
 
diff --git a/tests/js_tests/main.js b/tests/js_tests/main.js
new file mode 100644
index 0000000000..abdff54451
--- /dev/null
+++ b/tests/js_tests/main.js
@@ -0,0 +1,54 @@
+__webpack_public_path__ = '../../dist/'
+
+import 'babel-polyfill'
+
+require(
+   [
+       'dojo/ready',
+       'JBrowse/Browser'
+    ],
+   function( ready,Browser ) {
+
+    var jasmine = window.jasmine;
+var jasmineEnv = jasmine.getEnv();
+jasmineEnv.updateInterval = 1000;
+
+var htmlReporter = new jasmine.HtmlReporter();
+
+jasmineEnv.addReporter(htmlReporter);
+
+jasmineEnv.specFilter = function(spec) {
+return htmlReporter.specFilter(spec);
+};
+ready( function() {execJasmine();});
+function execJasmine() {
+jasmineEnv.execute();
+}
+});
+
+cjsRequire('./spec/ExportGFF3.spec.js')
+cjsRequire('./spec/QueryParamConfigMapper.spec.js')
+cjsRequire('./spec/LazyArray.spec.js')
+cjsRequire('./spec/FeatureLayout.spec.js')
+cjsRequire('./spec/BigWig.spec.js')
+cjsRequire('./spec/ConfigManager.spec.js')
+cjsRequire('./spec/BAM.spec.js')
+cjsRequire('./spec/RemoteBinaryFile.spec.js')
+cjsRequire('./spec/Util.spec.js')
+cjsRequire('./spec/AddFiles.spec.js')
+cjsRequire('./spec/GBrowseParser.spec.js')
+cjsRequire('./spec/NestedFrequencyTable.spec.js')
+cjsRequire('./spec/TabixIndex.spec.js')
+cjsRequire('./spec/TabixIndexedFile.spec.js')
+cjsRequire('./spec/RESTStore.spec.js')
+cjsRequire('./spec/RegularizeRefSeqs.spec.js')
+cjsRequire('./spec/GFF3.spec.js')
+cjsRequire('./spec/SPARQLStore.spec.js')
+cjsRequire('./spec/SequenceChunkStore.spec.js')
+cjsRequire('./spec/GFF3Tabix.spec.js')
+cjsRequire('./spec/BEDTabix.spec.js')
+cjsRequire('./spec/BED.spec.js')
+cjsRequire('./spec/TwoBit.spec.js')
+cjsRequire('./spec/SequenceTrack.spec.js')
+cjsRequire('./spec/VCF.spec.js')
+
diff --git a/tests/js_tests/spec/GFF3Tabix.spec.js b/tests/js_tests/spec/GFF3Tabix.spec.js
index 111515f567..76961792b3 100644
--- a/tests/js_tests/spec/GFF3Tabix.spec.js
+++ b/tests/js_tests/spec/GFF3Tabix.spec.js
@@ -18,7 +18,7 @@ require([
             GFF3TabixStore
         ) {
 
-describe( 'GFF3 store', function() {
+describe( 'GFF3 tabix store', function() {
    it( 'can parse volvox_tabix.gff3.gz', function() {
            var p = new GFF3TabixStore({
                                      browser: new Browser({ unitTestMode: true }),
diff --git a/tests/selenium_tests/travis_wrapper.sh b/tests/selenium_tests/travis_wrapper.sh
index 49fbc94c4a..0e84b67216 100755
--- a/tests/selenium_tests/travis_wrapper.sh
+++ b/tests/selenium_tests/travis_wrapper.sh
@@ -6,7 +6,7 @@
 
 set +e
 
-NOSEOPTS="--verbose --stop"
+NOSEOPTS="--verbose --stop $NOSEOPTS"
 nosetests $NOSEOPTS .
 FIRST_RUN_STATUS=$?
 
diff --git a/tests/selenium_tests/volvox_biodb_121_test.py b/tests/selenium_tests/volvox_biodb_121_test.py
deleted file mode 100644
index f622c30aaa..0000000000
--- a/tests/selenium_tests/volvox_biodb_121_test.py
+++ /dev/null
@@ -1,52 +0,0 @@
-import os
-import unittest
-import re
-from volvox_biodb_test import AbstractVolvoxBiodbTest
-
-class VolvoxBiodbTest121 ( AbstractVolvoxBiodbTest, unittest.TestCase ):
-
-    data_dir = 'tests/data/volvox_formatted_1_2_1/'
-
-    def setUp( self ):
-        # skip calling VolvoxBiodbTest's setUp, cause we are not
-        # actually running any formatting
-        super( AbstractVolvoxBiodbTest, self ).setUp()
-
-    def test_volvox( self ):
-        # select "ctgA from the dropdown
-        self.select_refseq( 'ctgA' )
-
-        # check a good browser title
-        assert "ctgA" in self.browser.title, "browser title is actually %s" % self.browser.title
-
-        # do a test where we search for a certain gene using the search box
-        self.search_f15()
-
-        self.assert_no_js_errors()
-
-        # test scrolling, make sure we get no js errors
-        self.scroll()
-
-        # test dragging in and displaying the wiggle track
-        self.wiggle()
-
-        # test sequence track display
-        self.sequence()
-    def wiggle( self ):
-
-        self.turn_on_track( 'Image - volvox' )
-
-        # see that we have an image track png in the DOM now
-        imagetrack_xpath =  "//div[contains(@class,'track')]//img[@class='image-track']"
-        imagetrack_png = self.assert_element( imagetrack_xpath )
-
-        self.turn_off_track( 'Image - volvox' )
-        # check that imagetrack png is not still in the DOM after the
-        # track is turned off
-        self.assert_no_element( imagetrack_xpath )
-
-    def baseURL( self ):
-        if not self.base_url:
-            self.base_url = re.sub('[^/]+$','compat_121.html',super( AbstractVolvoxBiodbTest, self ).baseURL() )
-        return self.base_url
-
diff --git a/tests/selenium_tests/volvox_biodb_test.py b/tests/selenium_tests/volvox_biodb_test.py
index 60bf212781..f5fc9c8b1f 100644
--- a/tests/selenium_tests/volvox_biodb_test.py
+++ b/tests/selenium_tests/volvox_biodb_test.py
@@ -10,8 +10,6 @@ class AbstractVolvoxBiodbTest( JBrowseTest ):
     data_dir = 'sample_data/json/volvox'
 
     def setUp( self ):
-        call( "rm -rf sample_data/json/volvox/", shell=True )
-        call( "./setup.sh" )
         super( AbstractVolvoxBiodbTest, self ).setUp()
 
     def test_volvox( self ):
diff --git a/utils/jb_run.js b/utils/jb_run.js
index b3c1d4d483..0fedcbdb6a 100755
--- a/utils/jb_run.js
+++ b/utils/jb_run.js
@@ -7,7 +7,6 @@
 var express = require('express');
 var getopt = require('node-getopt');
 var fs = require("fs-extra");
-var shelljs = require("shelljs");
 
 var thisPath = process.cwd();
 var jbrowsePath = "./";
diff --git a/utils/postinstall.js b/utils/postinstall.js
deleted file mode 100644
index b7fad28d8c..0000000000
--- a/utils/postinstall.js
+++ /dev/null
@@ -1,62 +0,0 @@
-var appPath = require("app-root-path").path;
-var shelljs = require("shelljs");
-var modPath = ""+shelljs.pwd();
-var fs = require("fs-extra");
-var async = require("async");
-
-
-console.log(">>> postinstall");
-console.log("appPath",appPath,"modPath",modPath);
-
-// list of directories to copy
-var dirList = [
-    {src:'dojo',trg:'dojo'},
-    {src:'dijit',trg:'dijit'},
-    {src:'dojox',trg:'dojox'},
-    {src:'jszlib',trg:'jszlib'},
-    {src:'json-schema',trg:'json-schema'},
-    {src:'lazyload',trg:'lazyload'},
-    {src:'dgrid',trg:'dgrid'},
-    {src:'jDataView',trg:'jDataView'},
-    {src:'dojo-util',trg:'util'},
-    {src:'filesaver.js',trg:'FileSaver'},
-    {src:'dojo-dstore',trg:'dstore'}
-];
-
-async.each(dirList,
-    function(item, cb){
-        var src = appPath+"/node_modules/"+item.src;
-        var trg = modPath+"/src/"+item.trg;
-
-        // delete the old dir from src dir and make a current copy
-        fs.remove(trg)
-        .then(function() {
-            return fs.copy(src, trg);
-        })
-        .then(function() {
-            console.log("copied",trg);
-            cb();
-        })
-        .catch(function(err) {
-            console.log("error",err);
-            cb(err);
-        });
-
-    },
-    // done copying all directories
-    function(err){
-        if (err) {
-            console.log("error",err);
-            return;
-        }
-        console.log("copying scripts to app root");
-
-        var src = modPath+"/utils/jb_*";
-        var trg = appPath;
-
-        shelljs.cp(src,trg);
-
-        console.log("postinstall done");
-    }
-);
-
diff --git a/webpack.config.js b/webpack.config.js
new file mode 100644
index 0000000000..0a8e91a5b8
--- /dev/null
+++ b/webpack.config.js
@@ -0,0 +1,130 @@
+const DojoWebpackPlugin = require("dojo-webpack-plugin")
+const CopyWebpackPlugin = require("copy-webpack-plugin")
+const UglifyJsPlugin = require('uglifyjs-webpack-plugin')
+const CleanWebpackPlugin = require('clean-webpack-plugin');
+
+const path = require("path")
+const glob = require('glob')
+const webpack = require("webpack")
+
+const DEBUG = !process.env.JBROWSE_BUILD_MIN;
+const AUTOPREFIXER_BROWSERS = [
+    'Android 2.3',
+    'Android >= 4',
+    'Chrome >= 35',
+    'Firefox >= 31',
+    'Explorer >= 9',
+    'iOS >= 7',
+    'Opera >= 12',
+    'Safari >= 7.1',
+  ];
+
+var webpackConf = {
+    entry: {
+        main: "src/JBrowse/main",
+    },
+    plugins: [
+        new CleanWebpackPlugin(['dist']),
+
+        new DojoWebpackPlugin({
+            loaderConfig: require("./build/dojo-loader-config"),
+            environment: {
+                dojoRoot: "./dist"
+            },
+            buildEnvironment: {
+                dojoRoot: "node_modules"
+            },
+            locales: ["en"],
+            loader: path.resolve('./build/dojo-webpack-plugin-loader/dojo/dojo.js')
+        }),
+
+        new CopyWebpackPlugin([{
+            context: "node_modules",
+            from: "dojo/resources/blank.gif",
+            to: "dojo/resources"
+        }]),
+
+        new webpack.NormalModuleReplacementPlugin(
+            /^dojox\/gfx\/renderer!/,
+            "dojox/gfx/canvas"
+        ),
+
+        new webpack.NormalModuleReplacementPlugin(/^dojo\/text!/, function(data) {
+            data.request = data.request.replace(/^dojo\/text!/, "!!raw-loader!");
+        }),
+
+        new webpack.NormalModuleReplacementPlugin(
+            /^css!/, function(data) {
+                data.request = data.request.replace(/^css!/, "!style-loader!css-loader!sass-loader!")
+            }
+        ),
+    ],
+    module: {
+        rules: [
+            {
+                test: /\.js$/,
+                exclude: /node_modules/,
+                use: {
+                  loader: 'babel-loader',
+                  options: {
+                    presets: ['@babel/preset-env'], //< NOTE: respects package.json->browserslist
+                    cacheDirectory: true
+                  }
+                }
+            },
+            {
+                test: /src\/JBrowse\/main.js|tests\/js_tests\/main.js/,
+                use: [{ loader: path.resolve('build/glob-loader.js') }]
+            },
+            {
+                // we need to set webpackConf.node.global to false for dojo,
+                // but the `buffer` node module absolutely needs the `global` object
+                // present. so we shim here to provide it an empty object
+                test: /node_modules\/buffer\//,
+                use: 'imports-loader?global=>{}'
+            },
+            {
+                test: /\.(png|jpg|jpeg|gif|svg|woff|woff2)$/,
+                use: 'url-loader?limit=10000',
+            },
+            {
+                // regex replace all JBrowse plugin JS to just remove any use of dojo/domReady!
+                test: filepath => filepath.indexOf(__dirname+'/plugins')===0 && /\.js$/.test(filepath),
+                use: {
+                    loader: 'regexp-replace-loader',
+                    options: {
+                        match: {
+                            pattern: '["`\']dojo/domReady!?["\'`]\s*,?',
+                            flags: 'g'
+                        },
+                        replaceWith: ''
+                    }
+                }
+            }
+        ]
+    },
+    output: {
+        filename: '[name].bundle.js',
+        chunkFilename: '[name].bundle.js',
+        path: path.resolve(__dirname, 'dist'),
+        publicPath: 'dist/'
+    },
+    resolveLoader: {
+        modules: ["node_modules"]
+    },
+    node: {
+        process: false,
+        global: false // needed for dojo
+    },
+
+}
+
+if (DEBUG) {
+    webpackConf.devtool = 'source-map'
+    webpackConf.entry.run_jasmine = 'tests/js_tests/main.js'
+    webpackConf.plugins.push( new webpack.optimize.AggressiveMergingPlugin() )
+} else {
+    webpackConf.plugins.push( new UglifyJsPlugin({ parallel: 4 }))
+}
+
+module.exports = webpackConf