Gabaldon lab

Repositories

• perSVade

  perSVade: personalized Structural Variation detection
  Python 1 1 0 0 Updated Dec 22, 2020

• karyon

  This is the Karyon Pipeline
  Python 0 0 0 0 Updated Dec 10, 2020

• detect_recombination
  Python 0 0 0 0 Updated Dec 8, 2020

• ngs_public

  NGS scripts
  R 1 1 0 0 Updated Nov 10, 2020

• Host-pathogen_interactions

  Forked from GrantHov/Host-pathogen_interactions

  Host-pathogen_interactions
  1 0 0 0 Updated Nov 10, 2020

• haplotypo

  This is the Haplotypo repository
  Python 1 11 0 0 Updated Nov 3, 2020

• ete

  Forked from etetoolkit/ete

  Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.
  Python GPL-3.0 163 0 0 0 Updated Oct 1, 2020

• nextPARS_docker
  Python GPL-3.0 0 0 0 0 Updated Sep 10, 2020

• Probe_enrichment

  Forked from GrantHov/Probe_enrichment

  Script for counting human and fungal reads
  Python 1 0 0 0 Updated Jun 8, 2020

• EvolClust

  Evolcust retrieves groups of genes that appear clustered together in groups of species
  Python 0 7 0 0 Updated Feb 14, 2020

• crossmapper

  Crossmapper software
  Python GPL-3.0 1 3 1 0 Updated Jan 26, 2020

• C.-orthopsilosis-ASE

  Forked from GrantHov/C.-orthopsilosis-ASE

  C. orthopsilosis ASE
  Python 1 0 0 0 Updated Nov 8, 2019

• haplotypo_docker
  Dockerfile 0 0 0 0 Updated Nov 4, 2019

• Hybrid_project

  Forked from GrantHov/Hybrid_project

  Hybrid_project
  Python 1 0 0 0 Updated Sep 20, 2019

• redundans

  Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
  Perl GPL-2.0 8 34 7 0 Updated May 6, 2019

• bioconda-recipes

  Forked from bioconda/bioconda-recipes

  Conda recipes for the bioconda channel.
  Shell 1,704 0 0 0 Updated Feb 27, 2019

• Synthenic-Families
  Python 0 1 0 0 Updated Dec 14, 2018

• nextPARS
  Python 0 0 0 0 Updated Nov 21, 2017

• ASEbyBayes

  Allele Specific Expression classified by Bayesian inference
  Java 0 1 0 0 Updated Jun 26, 2017

• phylomizer

  PhylomeDB automated pipeline for reconstructing high-quality phylogenetic tree
  Python GPL-3.0 4 6 8 0 Updated Feb 12, 2017

• Abaccus

  Abaccus pipeline for detection of HGT events
  Python GPL-3.0 0 1 0 0 Updated Sep 23, 2016

• markers_genes

  An automated pipeline for the identification of phylogenetically informative marker genes given as output a number of proteomes
  Python 1 7 0 0 Updated Feb 13, 2014