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added 3 new shark species contributed by Shigehiro
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MarioStanke committed Aug 20, 2018
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6 changes: 6 additions & 0 deletions README.TXT
Expand Up @@ -102,6 +102,9 @@ Currently, AUGUSTUS has been trained for predicting genes in:
- Ciona intestinalis (Chordata)
- Strongylocentrotus purpuratus (Echinodermata)
- Pisaster ochraceus (starfish)
- Chiloscyllium punctatum (bamboo shark)
- Scyliorhinus torazame (cat shark)
- Rhincodon typus (whale shark)

The training annotation files of the following species are a courtesy of Jason Stajich (see also http://fungal.genome.duke.edu/):
Aspergillus fumigatus, Aspergillus nidulans, Aspergillus oryzae, Aspergillus terreus, Botrytis cinerea, Candida albicans
Expand Down Expand Up @@ -135,6 +138,9 @@ Parameters for Apis dorsata were contributed by Francisco Camara Ferreira.

Parameters for Mnemiopsis leidyi, Nematostella vectensis, Ciona intestinalis and Strongylocentrotus purpuratus were contributed by Joseph Ryan (University of Florida).

Parameters for Chiloscyllium punctatum (brownbanded bamboo shark), Scyliorhinus torazame (cloudy catshark) and Rhincodon typus (whale shark) were contributed by Shigehiro Kuraku.


2. INSTALLATION
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