GavinHaLab

Repositories

• ichorCNA

  Forked from broadinstitute/ichorCNA

  Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
  R GPL-3.0 30 0 0 0 Updated Feb 25, 2020

• ichorCNA_offtarget

  Estimating tumor fraction by exploiting the off-target reads from targeted DNA sequencing.
  R 2 1 0 0 Updated Feb 24, 2020

• GavinHaLab.github.io

  Gavin Ha Lab Website
  R 0 0 0 0 Updated Feb 12, 2020

• SV_10X_analysis

  Forked from gavinha/SV_10X_analysis

  Structural variation analysis of 10X Genomics linked-read data
  R 2 0 0 0 Updated Feb 12, 2020

• SV_WGS_analysis

  Forked from gavinha/SV_WGS_analysis

  Structural variation analysis pipeline for cancer genomes
  R MIT 1 0 0 0 Updated Feb 3, 2020

• mutect2_snakemake

  Forked from annahoge/mutect2_snakemake

  A snakemake to run Mutect2 on analysis-ready bams, following GATK best practices.
  1 0 0 0 Updated Jan 17, 2020

• fastq_to_bam_interleaved_snakemake

  Forked from annahoge/fastq_to_bam_interleaved_snakemake

  A snakemake to convert interleaved fastq files to analysis-ready bams, following GATK best practices.
  1 0 0 0 Updated Nov 19, 2019

• fastq_to_bam_paired_snakemake

  Forked from annahoge/fastq_to_bam_paired_snakemake

  A snakemake to convert paired fastq files to analysis-ready bams, following GATK best practices.
  1 0 0 0 Updated Nov 19, 2019

• Sequencing_analysis_assignment

  Sequencing analysis questions
  MIT 1 0 0 0 Updated Jun 29, 2019

• TitanCNA_10X_snakemake

  Forked from gavinha/TitanCNA_10X_snakemake

  Snakemake workflow for 10X Genomics WGS analysis using TitanCNA
  R 1 0 0 0 Updated Apr 18, 2019