GavinHaLab

Cancer Genomics and Computational Biology Lab at Fred Hutch

GavinHaLab.github.io Public
Gavin Ha Lab Website

JavaScript 0 0 0 1 Updated Jul 1, 2022
CRPCSubtypingPaper Public
Analysis code used in ctDNA CRPC phenotype manuscript

Python 1 0 0 0 Updated Jun 30, 2022
Griffin Public
A flexible framework for nucleosome profiling of cell-free DNA

Python 1 3 0 0 Updated Jun 2, 2022
TitanCNA_SV_WGS Public

R 1 MIT 0 0 0 Updated May 25, 2022
gridss2_somatic_sv_call Public

R 0 0 0 0 Updated May 10, 2022
crpc-sv-pattern-study Public

R 1 0 0 0 Updated Apr 28, 2022
ichorCNA Public
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

R 3 GPL-3.0 67 2 2 Updated Feb 25, 2022
fastq_to_bam_paired_snakemake Public
A snakemake to convert paired fastq files to analysis-ready bams, following GATK best practices.

0 2 0 0 Updated Feb 18, 2022
downsampling_snakemake Public

0 2 0 0 Updated Feb 7, 2022
fastq_to_bam_interleaved_snakemake Public
A snakemake to convert interleaved fastq files to analysis-ready bams, following GATK best practices.

0 1 0 0 Updated Jan 10, 2022

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