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Lineage/lineage-monocle
MAST/1.0.5
Monocle
Rsubread/1.18.0
SARTools
SCPattern/0.0.4
Seurat
Sincell/1.6.0
UMI-tools
albacore
alignqc
babel
bamqc/20160127
bcbb-gff/0.6.2
bcbio-nextgen/1.0.0a0
bcl2fastq/bcl2fastq-1.8.4
bcl2fastq2
bed2bigbed
bedops/2.4.14
bedtools
biomart/2.26.1
bioperl/bioperl-1.6.924
biopython/1.63-1
bioservices
biotoolbox
blacklistremove
blast+/2.2.28
blast2/2.2.26
bowtie
bwa
casava/casava-1.8.2
cutadapt
deeptools
deseq
dwgsim/dwgsim-0.1.11
eoulsan/eoulsan-1.2.2
express/express-1.5.1
fastqc
genometools
gff3-ptools/gff3-ptools-0.4.0
ggplot2
gmap/2017-02-15
hgcolor
hisat/0.1.5-beta
htseq
k8/0.2.4
kentutils/302.1.0
macs
marginAlign/0.1
matplotlib/1.4.3
minimap2/v2.3
miso/miso-0.5.3
nanook/0.79
nanopack
olb/olb-1.9.4
paftools/2.9
picard/1.134
pinfish/master
porechop
poretools/0.6.0
proovread/2.14.0
ribomap/1.2
ribopicker/0.4.3
riboproanalysis/1.0.0
rsem
samtools
scClustering/seurat-clustering
scDGE/dge-scde
scdd
scde
scpoolednormalization
scqualitychecking
scran
singlecellexperiment/3.7
star
subread
sumNormalization
tophat2/2.0.14
trimgalore/0.4.1
README.md

README.md

Dockerfiles

This repository contains Dockerfile used to make Docker images used at Genomic Paris Centre.