A pipeline and a framework for NGS analysis (RNA-Seq and soon Chip-Seq)
Branch: master
Clone or download
Latest commit 3235283 Feb 15, 2019
Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
src
.gitignore Merge branch 'master' into toolgalaxy Dec 1, 2014
Bpipe-scripts-LICENSE.txt ADD: Add support for PBS Pro, SLURM and TORQUE schedulers. Mar 1, 2016
COMPILING.txt UPDATE: Rename fr.ens.transcriptome.eoulsan.* packages to fr.ens.biol… Jan 6, 2016
Dockerfile FIX: Fix Dockerfile and now use bioconductor/release_sequencing:3.1 i… Sep 27, 2018
INSTALL.txt UPDATE: Rename fr.ens.transcriptome.eoulsan.* packages to fr.ens.biol… Jan 6, 2016
LICENSE-CeCILL-C.txt
LICENSE-LGPL.txt Initial commit Jan 16, 2012
README.md Update README.md Jun 15, 2018
checkstyle-license.txt UPDATE: Rename fr.ens.transcriptome.eoulsan.* packages to fr.ens.biol… Jan 6, 2016
checkstyle.xml UPDATE: In checkstyle, remove TODO rule and change the required order… Dec 10, 2014
eoulsan-eclipse-cleanup-style.xml
eoulsan-eclipse-formatter-style.xml
eoulsan.dic UPDATE: Add mapper and genome words to eoulsan.dic. Dec 11, 2014
pmd-rules.xml UPDATE check style, add configuration file for checkstyle and pmd at … Aug 22, 2014
pom.xml FIX: In pom.xml now do not use system class loader for maven-surefire… Nov 20, 2018

README.md

Eoulsan

This is the Eoulsan git reference repository.

Eoulsan is a versatile framework based on the Hadoop implementation of the MapReduce algorithm, dedicated to high throughput sequencing data analysis on distributed computers. With Eoulsan, users can easily set up a cloud computing cluster and automate the analysis of several samples at once using various software solutions available. Working either on standalone workstations or cloud computing clusters, Eoulsan provides an integrated and flexible solution for RNA-Seq data analysis of differential expression.

Here is a quick access to the main pages: