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Commits on Mar 21, 2019
  1. ToulligQC is now 1.1.

    jourdren committed Mar 21, 2019
Commits on Mar 20, 2019
  1. FIX: In toulligqc.py, fix sequencing_summary_source and sequencing_su…

    jourdren committed Mar 20, 2019
    …mmary_1dsqr_source parameter handling when the parameters are not set.
Commits on Mar 19, 2019
  1. UPDATE: In onedsquare_sequencing_summary_extractor.py, small refactor…

    jourdren committed Mar 19, 2019
    …ing and remove unused code.
  2. FIX: In onedsquare_sequencing_summary_extractor.py, fix idsqr sequenc…

    jourdren committed Mar 19, 2019
    …ing summary source file paths.
  3. UPDATE: In sequencing_summary_extractor.py, now check if one or more …

    jourdren committed Mar 19, 2019
    …sequencing summary file has been defined.
Commits on Mar 5, 2019
  1. UPDATE: Rename remove albacore name from sequencing summary extractor…

    jourdren committed Mar 5, 2019
    …s, rename program arguments and variable names.
  2. UPDATE: Refactoring of the extractors. The check_conf() methods now c…

    jourdren committed Mar 5, 2019
    …heck if the input files exists. No data is now loaded before calling the init() method.
  3. UPDATE: In albacore_pipeline_log_extractor.py optimize file parsing, …

    jourdren committed Mar 5, 2019
    …the regex are no more compiled for each parsed line.
  4. UPDATE: Rename the key created by the telemetry extractor.

    jourdren committed Mar 5, 2019
    UPDATE: Add the name of the basecaller and its analysis mode.
  5. ADD: Add a new extractor to retrieve run information from the sequenc…

    jourdren committed Mar 5, 2019
    …ing_telemetry.js file. A Fast5 input file is no more mandatory to use ToulligQC.
Commits on Oct 31, 2018
  1. Update README.md

    jourdren committed Oct 31, 2018
Commits on Sep 11, 2018
Commits on Mar 21, 2018
  1. ToulligQC is now 0.9.

    jourdren committed Mar 21, 2018
  2. FIX: In fastq_extractor.py, the _fastq_metrics() function stored all …

    jourdren committed Mar 21, 2018
    …the entries of a FASTQ in memory to count the nucleotides. Now only store the base counts in memory.
    
    UPDATE: In fastq_extractor.py, factorize code to open FASTQ files.
Commits on Mar 16, 2018
  1. ToulligQC is now 0.8.

    jourdren committed Mar 16, 2018
Commits on Mar 14, 2018
  1. ToulligQC is now 0.7.

    jourdren committed Mar 14, 2018
Commits on Nov 28, 2017
  1. Update README.md

    jourdren committed Nov 28, 2017
  2. Update README.md

    jourdren committed Nov 28, 2017
  3. Update README.md

    jourdren committed Nov 28, 2017
  4. Update README.md

    jourdren committed Nov 28, 2017
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