@@ -62,7 +62,7 @@ many other reactions. Together all these metabolites and reactions form a _metab
6262network_ .
6363
6464<center >
65- <img src="https://github.com/GeomScale/geomscale.github.io/blob/gh-pages/_posts/figures/small_recon_net_2 .png"><br>
65+ <img src="https://upload.wikimedia.org/wikipedia/commons/f/f0/Small_recon_net .png"><br>
6666 A small fragment of the human metabolic network (Recon1)
6767</center >
6868
@@ -123,7 +123,7 @@ The reaction 3DSPHR participates in [sphingolipid metabolism](https://www.kegg.j
123123while the reaction TYMSULT is related to the protein-tyrosine sulfotransferase [ activity] ( https://www.kegg.jp/entry/R02586 ) .
124124
125125<center >
126- <img src="https://github.com/GeomScale/geomscale.github.io/blob/gh-pages/_posts/figures/FBA_fluxes_fba_r_2 .png"><br>
126+ <img src="https://upload.wikimedia.org/wikipedia/commons/f/f0/FBA_fluxes .png"><br>
127127</center >
128128
129129For both GK1 and CTPS2, FBA implies that the fluxes increase when the virus biomass takes its maximum possible value.
@@ -183,12 +183,13 @@ two vertical dotted lines the two fluxes that I previously computed with FBA. Ne
183183with the average fluxes we get from ` dingo ` 's sampling routines.
184184
185185<center >
186- <img src="https://github.com/GeomScale/geomscale.github.io/blob/gh-pages/_posts/figures/density_flux_TYMSULT_fba_2 .png"><br>
187- <img src="https://github.com/GeomScale/geomscale.github.io/blob/gh-pages/_posts/figures/density_flux_3DSPHR_fba_2 .png"><br>
188- <img src="https://github.com/GeomScale/geomscale.github.io/blob/gh-pages/_posts/figures/density_flux_ctps2_fba_2 .png"><br>
189- <img src="https://github.com/GeomScale/geomscale.github.io/blob/gh-pages/_posts/figures/density_flux_gk1_fba_2 .png"><br>
186+ <img src="https://upload.wikimedia.org/wikipedia/commons/b/b4/Density_flux_TYMSULT .png"><br>
187+ <img src="https://upload.wikimedia.org/wikipedia/commons/a/a6/Density_flux_3DSPHR .png"><br>
188+ <img src="https://upload.wikimedia.org/wikipedia/commons/d/da/Density_flux_ctps2 .png"><br>
189+ <img src="https://upload.wikimedia.org/wikipedia/commons/b/b5/Density_flux_gk1 .png"><br>
190190</center >
191191
192+
192193The blue density is computed by human's biomass-optimized states, while the red density is computed
193194by virus-optimized states. The fluxes with a higher value on the y-axis in the plot are
194195more possible to be selected by the metabolic network.
@@ -221,7 +222,7 @@ values of TYMSULT are not zero here, as we noticed in the corresponding probabil
221222densities, but they are both much smaller than the other flux values.
222223
223224<center >
224- <img src="https://github.com/GeomScale/geomscale.github.io/blob/gh-pages/_posts/figures/average_fluxes_sampling_r .png"><br>
225+ <img src="https://upload.wikimedia.org/wikipedia/commons/b/b0/Average_fluxes .png"><br>
225226</center >
226227
227228To summarize, flux sampling could agree or disagree with FBA about the flux values. In
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