From b94a92d2e43036c2f3cf571def11a5504ac8ae4f Mon Sep 17 00:00:00 2001
From: Fei Zhang <fei.zhang@ga.gov.au>
Date: Tue, 22 Sep 2020 10:23:00 +1000
Subject: [PATCH 1/4] Begin a branch to test use github actions

---
 .github/workflows/hiperseis_main_ci.yml | 36 +++++++++++++++++++++++++
 1 file changed, 36 insertions(+)
 create mode 100644 .github/workflows/hiperseis_main_ci.yml

diff --git a/.github/workflows/hiperseis_main_ci.yml b/.github/workflows/hiperseis_main_ci.yml
new file mode 100644
index 00000000..e6aa9893
--- /dev/null
+++ b/.github/workflows/hiperseis_main_ci.yml
@@ -0,0 +1,36 @@
+# This workflow is setup by Fei Zhang to use Github Actions 202-09-14
+
+name: hiperseis_main_ci
+
+on: [push]
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: [3.7, 3.8]
+
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v2
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install flake8 pytest
+        sudo apt-get install proj-bin
+        pip install numpy
+        if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
+#     - name: Lint with flake8
+#       run: |
+#         # stop the build if there are Python syntax errors or undefined names
+#         flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
+#         # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
+#         flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
+    - name: Test with pytest
+      run: |
+        python -m pytest ./tests

From d2250f425c0b1ae8c0208f7a25aa0410e59bb664 Mon Sep 17 00:00:00 2001
From: zhang01GA <fei.zhang@ga.gov.au>
Date: Wed, 30 Sep 2020 10:49:26 +1000
Subject: [PATCH 2/4] github action yml file

---
 .github/workflows/hiperseis_main_ci.yml | 16 ++++++++++++++--
 1 file changed, 14 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/hiperseis_main_ci.yml b/.github/workflows/hiperseis_main_ci.yml
index e6aa9893..bfd61955 100644
--- a/.github/workflows/hiperseis_main_ci.yml
+++ b/.github/workflows/hiperseis_main_ci.yml
@@ -20,10 +20,22 @@ jobs:
         python-version: ${{ matrix.python-version }}
     - name: Install dependencies
       run: |
+        sudo apt-get install libhdf5-dev
+        sudo apt-get install libmpich-dev
+        sudo apt-get install libproj-dev proj-bin
+        sudo apt-get install libgeos-dev
+        sudo apt-get install libnetcdf-dev
+
         python -m pip install --upgrade pip
-        pip install flake8 pytest
-        sudo apt-get install proj-bin
+
         pip install numpy
+        pip install Cython --install-option="--no-cython-compile"
+        pip install flake8 pytest
+        pip install pytest-cov
+        pip install coveralls
+        pip install pip-tools
+        pip-compile --upgrade
+
         if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
 #     - name: Lint with flake8
 #       run: |

From 46077e66d7f57616e7e5530dfe897cbd9f17dd3e Mon Sep 17 00:00:00 2001
From: zhang01GA <fei.zhang@ga.gov.au>
Date: Wed, 30 Sep 2020 11:07:26 +1000
Subject: [PATCH 3/4] github action yml file adding install -r
 tests/requirements.txt

---
 .github/workflows/hiperseis_main_ci.yml | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/hiperseis_main_ci.yml b/.github/workflows/hiperseis_main_ci.yml
index bfd61955..b690e163 100644
--- a/.github/workflows/hiperseis_main_ci.yml
+++ b/.github/workflows/hiperseis_main_ci.yml
@@ -37,12 +37,15 @@ jobs:
         pip-compile --upgrade
 
         if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
+        pip install -r tests/requirements.txt
+        pip list
 #     - name: Lint with flake8
 #       run: |
 #         # stop the build if there are Python syntax errors or undefined names
 #         flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
 #         # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
 #         flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
-    - name: Test with pytest
+    - name: Running pytest
       run: |
         python -m pytest ./tests
+

From fae36772fbd93472e8d07b46a065b039b4fa9d92 Mon Sep 17 00:00:00 2001
From: zhang01GA <fei.zhang@ga.gov.au>
Date: Wed, 30 Sep 2020 11:54:03 +1000
Subject: [PATCH 4/4] github action yml file submodule checkout phasepapy

---
 .github/workflows/hiperseis_main_ci.yml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/hiperseis_main_ci.yml b/.github/workflows/hiperseis_main_ci.yml
index b690e163..36b21cf2 100644
--- a/.github/workflows/hiperseis_main_ci.yml
+++ b/.github/workflows/hiperseis_main_ci.yml
@@ -10,7 +10,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: [3.7, 3.8]
+        python-version: [3.6, 3.7]
 
     steps:
     - uses: actions/checkout@v2
@@ -20,6 +20,7 @@ jobs:
         python-version: ${{ matrix.python-version }}
     - name: Install dependencies
       run: |
+        git submodule update --init --recursive
         sudo apt-get install libhdf5-dev
         sudo apt-get install libmpich-dev
         sudo apt-get install libproj-dev proj-bin