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A web-application for running SNPmatch
A simple python library to identify the most likely strain from an entire population
nextflow pipeline for single read rna-seq
A nextflow pipeline to estimate sample (dis)similarity using kWIP
RNA 5' analysis tools for use with the nanoPARE protocol
A collection of easyconfig files that describe which software to build using which build options with EasyBuild.
Guide for Galaxy at the GMI
Atwell et al data
Collection of easyblocks that implement support for building and installing software with EasyBuild.
The “Phenobox”, a flexible, automated, open-source plant phenotyping solution
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
A mixed-model approach for genome-wide association studies of correlated traits in structured populations
Contains scripts used to design and analyze small RNA spike-in oligonucleotides as described in Lutzmayer, Enugutti and Nodine (2017) Novel small RNA spike-in oligonucleotides enable absolute normalization of small RNA-Seq data, Scientific Reports
An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations
The Integrated Analysis Platform for high-throughput plant image analysis adapted for the Phenopipe System
The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)
OpenID Connect support for Flask
Araport Community API for accessing the A.thaliana master accession list
Dormancy Paper infos
Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden
384 SNP Illumina assay that can be used as a "universal" genotyping panel for segregating populations and fingerprinting
Computational tool for inferring haplotype frequencies from pooled samples