@Gregor-Mendel-Institute

GMI: Gregor Mendel Institute of Molecular Plant Biology GmbH

Pinned repositories

  1. AraGeno

    A web-application for running SNPmatch

    HTML

  2. SNPmatch

    A simple python library to identify the most likely strain from an entire population

    Python 5 3

  • A collection of easyconfig files that describe which software to build using which build options with EasyBuild.

    Python 315 GPL-2.0 Updated Jul 13, 2018
  • A mixed-model approach for genome-wide association studies of correlated traits in structured populations

    R 4 4 Updated Jun 22, 2018
  • The “Phenobox”, a flexible, automated, open-source plant phenotyping solution

    Python 1 GPL-2.0 Updated Jun 11, 2018
  • nextflow pipeline for single read rna-seq

    Nextflow 3 1 Updated May 29, 2018
  • Contains scripts used to design and analyze small RNA spike-in oligonucleotides as described in Lutzmayer, Enugutti and Nodine (2017) Novel small RNA spike-in oligonucleotides enable absolute normalization of small RNA-Seq data, Scientific Reports

    Python 2 Updated Apr 25, 2018
  • Nextflow Updated Apr 5, 2018
  • An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations

    15 6 Updated Mar 27, 2018
  • An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations

    R 1 1 GPL-3.0 Updated Mar 6, 2018
  • The Integrated Analysis Platform for high-throughput plant image analysis adapted for the Phenopipe System

    Java 2 Updated Feb 1, 2018
  • A simple python library to identify the most likely strain from an entire population

    Python 5 3 MIT Updated Jan 26, 2018
  • The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)

    C++ 19 GPL-3.0 Updated Oct 4, 2017
  • OpenID Connect support for Flask

    Python 40 BSD-2-Clause Updated Aug 11, 2017
  • Araport Community API for accessing the A.thaliana master accession list

    Python Updated Jun 17, 2017
  • R 2 1 Updated Mar 30, 2017
  • A web-application for running SNPmatch

    HTML MIT Updated Mar 21, 2017
  • Dormancy Paper infos

    1 Updated Mar 15, 2017
  • Dormancy Map

    HTML 1 Updated Dec 6, 2016
  • JavaScript Updated Dec 11, 2015
  • Updated Mar 12, 2015
  • Updated Mar 12, 2015
  • Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden

    Python 2 Updated Mar 11, 2015
  • 384 SNP Illumina assay that can be used as a "universal" genotyping panel for segregating populations and fingerprinting

    Updated Mar 10, 2015
  • Computational tool for inferring haplotype frequencies from pooled samples

    1 Updated Mar 10, 2015
  • Atwell et al data

    4 7 CC0-1.0 Updated Mar 10, 2015
  • Utility to batch download Adobe Creative Suite/Cloud updates and optionally import them into a Munki repository.

    Python 13 MIT Updated Jul 25, 2014
  • Linux Environment Initialisation scripts for Scientific Computing on HPC and Workstation Deployments

    Shell 1 2 Updated Dec 23, 2013
  • EasyBuild is a software installation framework in Python that allows you to install software in a structured and robust way.

    Python 1 127 GPL-2.0 Updated Apr 25, 2013
  • Collection of easyblock that implement support for building and installing software with EasyBuild.

    Python 154 GPL-2.0 Updated Apr 3, 2013
  • xltop

    Forked from jhammond/xltop

    continuous Lustre load monitor

    C 5 GPL-2.0 Updated Mar 15, 2013
  • Updated Jan 15, 2013