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README.md

ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data

releaseVersion develVersion Bioc total month

Project Status: Active - The project has reached a stable, usable state and is being actively developed. codecov Last-changedate GitHub forks GitHub stars Awesome

platform Build Status Linux/Mac Travis Build Status AppVeyor Build Status install with bioconda

The ggtree package extending the ggplot2 package. It based on grammar of graphics and takes all the good parts of ggplot2. ggtree is designed for not only viewing phylogenetic tree but also displaying annotation data on the tree.

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Please cite the following article when using ggtree:

G Yu, DK Smith, H Zhu, Y Guan, TTY Lam*. ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data. Methods in Ecology and Evolution. 2017, 8(1):28-36.

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For details, please visit our project website, https://guangchuangyu.github.io/ggtree.

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